BAC Information

Click to search

BAC

Clone NameB6Ng01-042J03
Chromosome3 (Build37)
Map Location 41,058,994 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042J03.bB6Ng01-042J03.g
ACCDH868908DH868909
length981126
definitionDH868908|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J03, 5' end.DH868909|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J03, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgtttagctcttagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagtctttatatatattggatattcgtcctc
tatctgatttaggataggtaaagatcctttcccaatctgttgatggcctt
tttgtcttattgacggtgtcttttgccttacagaagctttgcagtttcat
gaggttccatttgtcaattctcgatcttatagcacaagccattgctgttc
tattcaggaatttttcccctgtacctatatcttcaaggctttccctcact
ttctcctctataagtttcagtgtctctggttttatgtggagctccttgat
ccacttagatttgaccttagtaaaggagataggaatggatcaattcgcat
tcttctacatgataaccgccagttgtgccagcaccatttgttgaaaatgc
tgtcttttttccactggatggttttagctcccttgtcgaagatcaagtga
ccataggtgtgtgggttcaattctgtgttttcaattctattccattggtc
tacttgtctgttgctgtaccagtaccatgcagtttttatcacaattgctc
tgtagtacagctttaggtcgggcatggtgattccaccagagattctttta
tccttgagaagagtttttgctatcctaggttttttgttattccagatgaa
tttgcagattgctctttctaattcgttaaagaattgagttggaacagaac
catttctttagctttacaaattctctcacattgccccttcatagttctac
ccaagtccctgaactcctagcaactgatagtgtgttttccaaaactatgg
ttttgtcctttcagcaatgagattttgcttttaaaagatgggaacgaaag
tcaaccccactcgccttttgagacagggtttctctgtgtagccctagctg
tctgaaactcacttttgtagaccagggtggc
tcatgcacatcagcctttgttctgtaaaccttgctccctagtttaaagct
actagttaaataaaagtggctacagccaattgctgggaagaagagaagta
ggtggggcttcagtgggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058994_41059737
seq2: B6Ng01-042J03.b_40_782 (reverse)

seq1  TTCCAACTCAATTCTTCAACGAATTTGAAAGAGCAATCTGCAAATTCATC  50
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  TTCCAACTCAATTCTTTAACGAATTAGAAAGAGCAATCTGCAAATTCATC  50

seq1  TGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAAAG  100

seq1  AACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAA  150
      || ||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  AATCTCTGGTGGAATCACCATGCCCGACCTAAAGCTGTACTACAGAGCAA  150

seq1  TTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACCAA  200
      |||||||||||||||||||||||||||| ||  ||||||||| |||||||
seq2  TTGTGATAAAAACTGCATGGTACTGGTACAGCAACAGACAAGTAGACCAA  200

seq1  TGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTT  250
      ||||||||||||||| || |||||  ||| ||||||||||||||||||||
seq2  TGGAATAGAATTGAAAACACAGAATTGAACCCACACACCTATGGTCACTT  250

seq1  GATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTT  300

seq1  TCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGA  350
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  TCAACAAATGGTGCTGGCACAACTGGCGGTTATCATGTAGAAGAATGCGA  350

seq1  ATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAA  400
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  ATTGATCCATTCCTATCTCCTT-TACTAAGGTCAAATCTAAGTGGATCAA  399

seq1  GGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGG  450
      ||| | ||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGAGCTCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGA  449

seq1  GGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACA  500
      || |||||||||||||||| |  |||||||||||||||||| ||||||||
seq2  GGGAAAGCCTTGAAGATATAGGTACAGGGGAAAAATTCCTGAATAGAACA  499

seq1  GCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAA  550
      ||||||||||||||| |||||| |||||| ||||||||| ||||||||||
seq2  GCAATGGCTTGTGCTATAAGATCGAGAATTGACAAATGGAACCTCATGAA  549

seq1  ACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-  599
      ||||||||||||||| ||||||||||||||||||||||||||||||||| 
seq2  ACTGCAAAGCTTCTGTAAGGCAAAAGACACCGTCAATAAGACAAAAAGGC  599

seq1  CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGA  649
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGAGGA  649

seq1  CTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATC  699
      | |||||||||||||||| ||| ||||||||||||||| |||||||||||
seq2  CGAATATCCAATATATATAAAG-ACTCAAGAAGGTGGACTCCAGAAAATC  698

seq1  AAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  744
      |||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAATAACCCCATTAAAAAATGGGGCTAAGAGCTAAACAAAGAATT  743