BAC Information

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BAC

Clone NameB6Ng01-042M21
Chromosome3 (Build37)
Map Location 84,507,926 - 84,647,472
singlet/doubletdoublet
Overlap geneTmem154
Upstream geneSfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4
Downstream geneLOC624889, Fbxw7, Dear1, LOC100042237, LOC100042125, Pet112l, 9930021J17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042M21.bB6Ng01-042M21.g
ACCDH869064DH869065
length1,1381,098
definitionDH869064|Mus musculus domesticus DNA, BAC clone: B6Ng01-042M21, 5' end.DH869065|Mus musculus domesticus DNA, BAC clone: B6Ng01-042M21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,646,330 - 84,647,472)(84,507,926 - 84,509,024)
sequence
gaattcattacacaaacaaactactggacgaattctctcaaaagaaaagc
ttacaggattgctcaagtgtctcctccttttttacatgggcttattcctc
tgactttaaagcaattctctgggcatcaccatgtattgtgcaaatcctaa
cagtcagcgggataaatgccagcagaaatactccttattcctgtggtcat
cagacatgaagaacttaatgctgctggacttaatcaaagaagagaaagaa
agtctggtgtggtaactactccagacacatctacctctagctttaaaagt
acattacagaagacgcaaactttaaaaaaaaaaaaaaaaagtgtatctac
tattgggataatctttctgtgcattgtgtaaaggttgtctttgtattatt
caaatgtactgaattctcatattggtatttttattcgatcatcacctgcc
tgagtattttgtaaacattcttctccgccaccttccaattggtttaataa
agagctgacagcctatagctgagacaggagaggaaaggggaacttccagg
cagagatagtagctatgggaagaaaagagaagtgagggagtcactagcca
gacactgaggaaatcagacttagtgagaggtaaggagccacatggcaaat
gtagattagaataaacaggttaattaaattatatgagctagttagaaagt
aacaagctaaggcctaagctttcataaataaataaataaataaataaata
aataaatagtctccgtgtcattattaagagctggtgggtagaaacagtca
gatgataatctactcaaaaatcaaaatattaaacatttgagatctattaa
caatcttcccacaatagaatttaatgtgtaacttaaatatttgttctaaa
cttgagacctttatacatatacatatatattgtgaaaagagctattaaat
gagattgttcctgatttatcgtctttttctaaatgtatgtgtgtgtctgt
ctgtctgtctgtgtgtacatgcccccaacaaacaacaaccccagcccgtg
tataagggaaaggaaaccctcctaagtggagttctctatcgatgatggac
agggacaaggctgggtcacagactcaactcagtcatga
gaattcttaagacagaaatatttatttttttacattattagtaggagaag
aaaccctcatcaatttgccttagctggatagctaatcagaacaaatcaga
ttttaaaataaagaaggccgtggaatttatctctgttcctgggttgtttg
ccttacgttcccagagctctgggtttgacctctagcactgtataaactgg
gcatggttgcagaaagaccattcctacaagcacaagtttattcacagata
catagtgagtttgaggtcaccctggaatatgtaagcctgtgactcaaaaa
caatttttttaagacacatgcttttgtgtattttttttttttaaagcaca
gtagcattgcttagctgaacttcttcagaaacttgtttcaataaacatgt
ttttaaaatccatttgggactcctttttaaaaagaacttactgaatttat
tctttgacagtttcatatatgtacgtatatgtatgaagtgcgttctgatt
tctgtagccccagcctctctaatctccttctcaccccctcacccttccta
caaataaatctcttctacacatgcatgccattttttgttttgttttgttt
tgttttgttttgttttgttttgagacacattgaatttaatccggattgtc
ttcgaggccaacggtgtggaacttctgggctcctaagtgggcaaacagtt
gaagacagtgactgtcgctctccaaggttcccttaacagccaatagttct
tctccgatccatgattgacggttgatcaaggctcagtcttaggtaggcag
tcacagctaacatggagtcatggctgcactgctgtgcaggccaaaacata
gcaaaacgacagcatttcacagccctctccccgtcttccagctccttaca
ggcttgctgtaccctctttcccaaagattctagagctctaaagctgaact
gcaaagatacatggatggctaagcaaggttctgaggataagtgaggagtt
gggtacttcaccttgacggaccgtcgtccgtcactccagccggcatgaag
cctctcttggaggggggattagtgtcagatgcatggacttagtcggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_84646330_84647472
seq2: B6Ng01-042M21.b_47_1184 (reverse)

seq1  TCATGACCTGAGTTTGAGTCTGATGACCCAGCCTTGTCCCTGTCACTCAT  50
      |||||| ||||| ||||||||| |||||||||||||||||||||  ||||
seq2  TCATGA-CTGAG-TTGAGTCTG-TGACCCAGCCTTGTCCCTGTCCATCAT  47

seq1  CTGATAGAGAACT-CACTTAGATGAGTTTTCCTCTCACCTTTATACACGT  99
      | ||||||||||| |||||||  | | |||||| |  || ||||||||| 
seq2  C-GATAGAGAACTCCACTTAGGAG-GGTTTCCTTT--CCCTTATACACGG  93

seq1  GCTGTGGTTTGTGTTTG-TGTGTGCATGTACACACAGACAGACAGACAGA  148
      |||| ||||  |||||| || | |||||||||||||||||||||||||||
seq2  GCTGGGGTTGTTGTTTGTTGGGGGCATGTACACACAGACAGACAGACAGA  143

seq1  CACACACATACATTTTAGAAAAGACGATAAATCAGGAACAATCTCATTTA  198
      |||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  CACACACATACATTTAGAAAAAGACGATAAATCAGGAACAATCTCATTTA  193

seq1  ATAGCTCTTTTCACAATATATATGTATATGTATAAAGGTCTCAAGTTTAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTTTTCACAATATATATGTATATGTATAAAGGTCTCAAGTTTAG  243

seq1  AACAAATATTTAAGTTACACATTAAATTCTATTGTGGGAAGATTGTTAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATATTTAAGTTACACATTAAATTCTATTGTGGGAAGATTGTTAAT  293

seq1  AGATCTCAAATGTTTAATATTTTGATTTTTGAGTAGATTATCATCTGACT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTCAAATGTTTAATATTTTGATTTTTGAGTAGATTATCATCTGACT  343

seq1  GTTTCTACCCACCAGCTCTTAATAATGACACGGAGACTATTTATTTATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTACCCACCAGCTCTTAATAATGACACGGAGACTATTTATTTATTT  393

seq1  ATTTATTTATTTATTTATTTATGAAAGCTTAGGCCTTAGCTTGTTACTTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATTTATGAAAGCTTAGGCCTTAGCTTGTTACTTT  443

seq1  CTAACTAGCTCATATAATTTAATTAACCTGTTTATTCTAATCTACATTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAGCTCATATAATTTAATTAACCTGTTTATTCTAATCTACATTTG  493

seq1  CCATGTGGCTCCTTACCTCTCACTAAGTCTGATTTCCTCAGTGTCTGGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGCTCCTTACCTCTCACTAAGTCTGATTTCCTCAGTGTCTGGCT  543

seq1  AGTGACTCCCTCACTTCTCTTTTCTTCCCATAGCTACTATCTCTGCCTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTCCCTCACTTCTCTTTTCTTCCCATAGCTACTATCTCTGCCTGG  593

seq1  AAGTTCCCCTTTCCTCTCCTGTCTCAGCTATAGGCTGTCAGCTCTTTATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCCCTTTCCTCTCCTGTCTCAGCTATAGGCTGTCAGCTCTTTATT  643

seq1  AAACCAATTGGAAGGTGGCGGAGAAGAATGTTTACAAAATACTCAGGCAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATTGGAAGGTGGCGGAGAAGAATGTTTACAAAATACTCAGGCAG  693

seq1  GTGATGATCGAATAAAAATACCAATATGAGAATTCAGTACATTTGAATAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGATCGAATAAAAATACCAATATGAGAATTCAGTACATTTGAATAA  743

seq1  TACAAAGACAACCTTTACACAATGCACAGAAAGATTATCCCAATAGTAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGACAACCTTTACACAATGCACAGAAAGATTATCCCAATAGTAGA  793

seq1  TACACTTTTTTTTTTTTTTTTTAAAGTTTGCGTCTTCTGTAATGTACTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTTTTTTTTTTTTTTTTTAAAGTTTGCGTCTTCTGTAATGTACTTT  843

seq1  TAAAGCTAGAGGTAGATGTGTCTGGAGTAGTTACCACACCAGACTTTCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTAGAGGTAGATGTGTCTGGAGTAGTTACCACACCAGACTTTCTT  893

seq1  TCTCTTCTTTGATTAAGTCCAGCAGCATTAAGTTCTTCATGTCTGATGAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTTTGATTAAGTCCAGCAGCATTAAGTTCTTCATGTCTGATGAC  943

seq1  CACAGGAATAAGGAGTATTTCTGCTGGCATTTATCCCGCTGACTGTTAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAATAAGGAGTATTTCTGCTGGCATTTATCCCGCTGACTGTTAGG  993

seq1  ATTTGCACAATACATGGTGATGCCCAGAGAATTGCTTTAAAGTCAGAGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCACAATACATGGTGATGCCCAGAGAATTGCTTTAAAGTCAGAGGA  1043

seq1  ATAAGCCCATGTAAAAAAGGAGGAGACACTTGAGCAATCCTGTAAGCTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCCCATGTAAAAAAGGAGGAGACACTTGAGCAATCCTGTAAGCTTT  1093

seq1  TCTTTTGAGAGAATTCGTCCAGTAGTTTGTTTGTGTAATGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGAGAGAATTCGTCCAGTAGTTTGTTTGTGTAATGAATTC  1138

seq1: chr3_84507926_84509024
seq2: B6Ng01-042M21.g_67_1164

seq1  GAATTCTTAAGACAGAAATATTTATTTTTTTACATTATTAGTAGGAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGACAGAAATATTTATTTTTTTACATTATTAGTAGGAGAAG  50

seq1  AAACCCTCATCAATTTGCCTTAGCTGGATAGCTAATCAGAACAAATCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTCATCAATTTGCCTTAGCTGGATAGCTAATCAGAACAAATCAGA  100

seq1  TTTTAAAATAAAGAAGGCCGTGGAATTTATCTCTGTTCCTGGGTTGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATAAAGAAGGCCGTGGAATTTATCTCTGTTCCTGGGTTGTTTG  150

seq1  CCTTACGTTCCCAGAGCTCTGGGTTTGACCTCTAGCACTGTATAAACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACGTTCCCAGAGCTCTGGGTTTGACCTCTAGCACTGTATAAACTGG  200

seq1  GCATGGTTGCAGAAAGACCATTCCTACAAGCACAAGTTTATTCACAGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGTTGCAGAAAGACCATTCCTACAAGCACAAGTTTATTCACAGATA  250

seq1  CATAGTGAGTTTGAGGTCACCCTGGAATATGTAAGCCTGTGACTCAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGAGTTTGAGGTCACCCTGGAATATGTAAGCCTGTGACTCAAAAA  300

seq1  CAATTTTTTTAAGACACATGCTTTTGTGTATTTTTTTTTTTTAAAGCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTTTAAGACACATGCTTTTGTGTATTTTTTTTTTTTAAAGCACA  350

seq1  GTAGCATTGCTTAGCTGAACTTCTTCAGAAACTTGTTTCAATAAACATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATTGCTTAGCTGAACTTCTTCAGAAACTTGTTTCAATAAACATGT  400

seq1  TTTTAAAATCCATTTGGGACTCCTTTTTAAAAAGAACTTACTGAATTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATCCATTTGGGACTCCTTTTTAAAAAGAACTTACTGAATTTAT  450

seq1  TCTTTGACAGTTTCATATATGTACGTATATGTATGAAGTGCGTTCTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGACAGTTTCATATATGTACGTATATGTATGAAGTGCGTTCTGATT  500

seq1  TCTGTAGCCCCAGCCTCTCTAATCTCCTTCTCACCCCCTCACCCTTCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGCCCCAGCCTCTCTAATCTCCTTCTCACCCCCTCACCCTTCCTA  550

seq1  CAAATAAATCTCTTCTACACATGCATGCCATTTTTTGTTTTGTTTTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAATCTCTTCTACACATGCATGCCATTTTTTGTTTTGTTTTGTTT  600

seq1  TGTTTTGTTTTGTTTTGTTTTGAGACACATTGAATTTAATCCGGATTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTGTTTTGAGACACATTGAATTTAATCCGGATTGTC  650

seq1  TTCGAGGCCAACGGTGTGGAACTTCTGGGCTCCTAAGTGGGCAAACAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGCCAACGGTGTGGAACTTCTGGGCTCCTAAGTGGGCAAACAGTT  700

seq1  GAAGACAGTGACTGTCGCTCTCCAAGGTTCCCTTAACAGCCAATAGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGTGACTGTCGCTCTCCAAGGTTCCCTTAACAGCCAATAGTTCT  750

seq1  TCTCCGATCCATGATTGACGGTTGATCAAGGCTCAGTCTTAGGTAGGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGATCCATGATTGACGGTTGATCAAGGCTCAGTCTTAGGTAGGCAG  800

seq1  TCACAGCTAACATGGAGTCATGGCTGCACTGCTGTGCAGGCCAAAACATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCTAACATGGAGTCATGGCTGCACTGCTGTGCAGGCCAAAACATA  850

seq1  GCAAAACGACAGCATTTCACAGCCCTCTCCCCGTCTTCCAGCTCCTTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACGACAGCATTTCACAGCCCTCTCCCCGTCTTCCAGCTCCTTACA  900

seq1  GGCTTGCTGTACCCTCTTTCCCAAAGATTCTAGAGCTCTAAAGCTGAACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCTGTACCCTCTTTCCCAAAGATTCTAGAGCTCTAAAGCTGAACT  950

seq1  GCAAAGATACATGGATGGCTAAGCAAGGTTCTGAGGATAAGTGA-GAGTT  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCAAAGATACATGGATGGCTAAGCAAGGTTCTGAGGATAAGTGAGGAGTT  1000

seq1  GGGTACTTCACCCTGAACGGACCGTCGTCCGTCACTCCCAGCCGTCATG-  1048
      |||||||||||| || |||||||||||||||||||| ||||||| |||| 
seq2  GGGTACTTCACCTTG-ACGGACCGTCGTCCGTCACT-CCAGCCGGCATGA  1048

seq1  AGCCTCTCTGGGA-GGGGCATCAGTGTCCAGATGCATGGACTTAGTCTGG  1097
      ||||||||| ||| |||| || ||||| ||||||||||||||||||| ||
seq2  AGCCTCTCTTGGAGGGGGGATTAGTGT-CAGATGCATGGACTTAGTC-GG  1096

seq1  AT  1099
      ||
seq2  AT  1098