BAC Information

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BAC

Clone NameB6Ng01-042N13
Chromosome3 (Build37)
Map Location 41,505,273 - 41,618,280
singlet/doubletdoublet
Overlap geneSclt1, D3Ertd751e
Upstream geneIntu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17
Downstream geneLOC666031, LOC100039204
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042N13.bB6Ng01-042N13.g
ACCDH869094DH869095
length1,057332
definitionDH869094|Mus musculus domesticus DNA, BAC clone: B6Ng01-042N13, 5' end.DH869095|Mus musculus domesticus DNA, BAC clone: B6Ng01-042N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,505,273 - 41,506,116)(41,617,949 - 41,618,280)
sequence
gaattcacaggtatgcttagccttttatatctctgctagggatctgactt
taggtccaatgcttgcaaatcttaaccagagtcatctccccagtccctat
catttaaactttttgaagttgttcctaattgctcactgattcattttgtt
gtgcttatttaaaagtctttgttaacagaaagcaaaatagcaaaacaaaa
aaaggatagccagttcatattgatgaaggattcaagtacagcaaaattac
atacactcaatacaacaatacctattattataaaccaactcttctataaa
aggccataaaacctcttcaaaataaaagccaataaaaaaacccccttcaa
aacaacaataatgggtatcttcaataacatctcagcaatcattctcatca
tcaaagccatccagataaaacacatgaacaaacttcagaattaaactata
ccatagatcaaatggacgtaacatctacaaactattccacccaaaagctg
caaagtacgcatttctaaagaatgagtgagtcacttaaaggaatctggat
ggaaataaaacaattcttagaatcaaatgagaatgagatcataacattct
ggaacctgaaggaaacagaaaaaagtggttatagctggaaaatttatagt
tacaattgcctacaataaaaaaatcagatatttcaaataaataatctaat
aataaaactcaagatcttagaaaagtttaccttcaaatcagcacaaggaa
agaaataataaagaccagagtttatattcatgaaacggaaaactaaaaga
acaatataaaagattaatgaaagagtgggttctatggaaaggataaatac
ccgggtgaatggatctttagcaaaactagtgaaagactcaattcaataaa
attagagataaaggaggatattatattatagcagttttcaatgagctcca
gataattatcagtgaatattctgaatttattttacaacaaactagaaaat
tctagatcctacaaaattactcatttaaaatttgatttttgttttgtttt
ttttttt
agaactataaaaaggaaatattacttcacaatctttagttaacctgtagc
tacagttccatagaaagtcataaaatcaaattccatggttgggtttaaaa
gctggataattttatagccgctcataagatcagggttcaggcccatcacc
ctcagtatctggaaaaaaaagatcgtacgagcagactgtgaggtaagtag
gtagggggtatgaggggtggccttagaagttacatgctggttccctgtag
ttaaatgacagctgccacttatatctccttgaataagacatacataaaag
caatagtggagaatagatacccctggaagctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41505273_41506116
seq2: B6Ng01-042N13.b_45_888

seq1  GAATTCACAGGTATGCTTAGCCTTTTATATCTCTGCTAGGGATCTGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGTATGCTTAGCCTTTTATATCTCTGCTAGGGATCTGACTT  50

seq1  TAGGTCCAATGCTTGCAAATCTTAACCAGAGTCATCTCCCCAGTCCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCAATGCTTGCAAATCTTAACCAGAGTCATCTCCCCAGTCCCTAT  100

seq1  CATTTAAACTTTTTGAAGTTGTTCCTAATTGCTCACTGATTCATTTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAAACTTTTTGAAGTTGTTCCTAATTGCTCACTGATTCATTTTGTT  150

seq1  GTGCTTATTTAAAAGTCTTTGTTAACAGAAAGCAAAATAGCAAAACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTATTTAAAAGTCTTTGTTAACAGAAAGCAAAATAGCAAAACAAAA  200

seq1  AAAGGATAGCCAGTTCATATTGATGAAGGATTCAAGTACAGCAAAATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATAGCCAGTTCATATTGATGAAGGATTCAAGTACAGCAAAATTAC  250

seq1  ATACACTCAATACAACAATACCTATTATTATAAACCAACTCTTCTATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACTCAATACAACAATACCTATTATTATAAACCAACTCTTCTATAAA  300

seq1  AGGCCATAAAACCTCTTCAAAATAAAAGCCAATAAAAAAACCCCCTTCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCATAAAACCTCTTCAAAATAAAAGCCAATAAAAAAACCCCCTTCAA  350

seq1  AACAACAATAATGGGTATCTTCAATAACATCTCAGCAATCATTCTCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAATAATGGGTATCTTCAATAACATCTCAGCAATCATTCTCATCA  400

seq1  TCAAAGCCATCCAGATAAAACACATGAACAAACTTCAGAATTAAACTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGCCATCCAGATAAAACACATGAACAAACTTCAGAATTAAACTATA  450

seq1  CCATAGATCAAATGGACGTAACATCTACAAACTATTCCACCCAAAAGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGATCAAATGGACGTAACATCTACAAACTATTCCACCCAAAAGCTG  500

seq1  CAAAGTACGCATTTCTAAAGAATGAGTGAGTCACTTAAAGGAATCTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTACGCATTTCTAAAGAATGAGTGAGTCACTTAAAGGAATCTGGAT  550

seq1  GGAAATAAAACAATTCTTAGAATCAAATGAGAATGAGATCATAACATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAAAACAATTCTTAGAATCAAATGAGAATGAGATCATAACATTCT  600

seq1  GGAACCTGAAGGAAACAGAAAAAAGTGGTTATAGCTGGAAAATTTATAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCTGAAGGAAACAGAAAAAAGTGGTTATAGCTGGAAAATTTATAGT  650

seq1  TACAATTGCCTACAATAAAAAAATCAGATATTTCAAATAAATAATCTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAATTGCCTACAATAAAAAAATCAGATATTTCAAATAAATAATCTAAT  700

seq1  AATAAAACTCAAGATCTTAGAAAAGTTTACCTTCAAATCAGCACAAGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACTCAAGATCTTAGAAAAGTTTACCTTCAAATCAGCACAAGGAA  750

seq1  AGAAATAATAAAGACCAGAGTTTATATTCATGAAACGGAAAACTAAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAATAAAGACCAGAGTTTATATTCATGAAACGGAAAACTAAAAGA  800

seq1  ACAATATAAAAGATTAATGAAAGAGTGGGTTCTATGGAAAGGAT  844
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATAAAAGATTAATGAAAGAGTGGGTTCTATGGAAAGGAT  844

seq1: chr3_41617949_41618280
seq2: B6Ng01-042N13.g_74_405 (reverse)

seq1  CAGCTTCCTGGGGTATCTATTCTCCACTATTGCTTTTATGTATGTCTTAT  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCAGGGGTATCTATTCTCCACTATTGCTTTTATGTATGTCTTAT  50

seq1  TCAAGGAGATATAAGTGGCAGCTGTCATTTAACTACAGGGAACCAGCATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAGATATAAGTGGCAGCTGTCATTTAACTACAGGGAACCAGCATG  100

seq1  TAACTTCTAAGGCCACCCCTCATACCCCCTACCTACTTACCTCACAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCTAAGGCCACCCCTCATACCCCCTACCTACTTACCTCACAGTCT  150

seq1  GCTCGTACGATCTTTTTTTTCCAGATACTGAGGGTGATGGGCCTGAACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTACGATCTTTTTTTTCCAGATACTGAGGGTGATGGGCCTGAACCC  200

seq1  TGATCTTATGAGCGGCTATAAAATTATCCAGCTTTTAAACCCAACCATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTTATGAGCGGCTATAAAATTATCCAGCTTTTAAACCCAACCATGG  250

seq1  AATTTGATTTTATGACTTTCTATGGAACTGTAGCTACAGGTTAACTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGATTTTATGACTTTCTATGGAACTGTAGCTACAGGTTAACTAAAG  300

seq1  ATTGTGAAGTAATATTTCCTTTTTATAGTTCT  332
      ||||||||||||||||||||||||||||||||
seq2  ATTGTGAAGTAATATTTCCTTTTTATAGTTCT  332