BAC Information

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BAC

Clone NameB6Ng01-042P08
Chromosome3 (Build37)
Map Location 153,182,574 - 153,378,778
singlet/doubletdoublet
Overlap geneSt6galnac3, EG545578
Upstream geneAk5, LOC100040705, Pigk, Rpl29-ps1, St6galnac5, LOC100040750
Downstream geneAsb17, Msh4, Rabggtb, Acadm, Slc44a5, LOC100040980, Lhx8, LOC100040810, LOC100040829, Tyw3, Cryz, BC007180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042P08.bB6Ng01-042P08.g
ACCDH869168DH869169
length8721,065
definitionDH869168|Mus musculus domesticus DNA, BAC clone: B6Ng01-042P08, 5' end.DH869169|Mus musculus domesticus DNA, BAC clone: B6Ng01-042P08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(153,182,574 - 153,183,443)(153,377,713 - 153,378,778)
sequence
gaattcagtcgggacaatgcattcttctcacatgtccgcaccaagcattg
tacctccaagtgacaagaagcatcggagaagagtaaggatgaaggagaga
aggaaggatggaggaaggaagcattatcgtcttatgaacagaaagctaaa
ttatctgaaaatattcagattctaaggagagatggagtttaccccaagaa
ggaaaactcagaaataggtcctctctcttcctcctcacccagagcctgct
gtggagatgcagtgggaccccagtgggaagcatggagcatcccagttaat
agaaagtgagtgaggccagccccagtgtgttaaccagacttgttgctggc
acaccgctcagatcaacattctctatgtggcacccactatgagctcaggg
gaatctgtgttttccaaaaacccagctttgagggaatcactggaagacaa
aatcttcttccacaggaagagcagtggatagctacaggacacactgtccc
agcaagggccatcatccccaggggaggggaggggatggtacagtttacct
tgtgcccagcgagcatcaggcaagacagctagagctttctgtgagggaga
cagtttttagagggaacctagttacacactcaagtcgagtgacatcacag
agtcacttaacctcggtcaccctgcttttggctccttgtgcctgttttcc
cacctgaaaataaaagcaaataaaagtacctaacaaacacgattgcttaa
aagtttaaatgactggctatatataaagatcctttggaacatttcctagt
aacaagaacattgtaatcagaggtggctttttattatgacatggtttcta
agacacctttccaccattaatc
gaattctccccagggtctgctgctctgtgggatgtgcaagtttgctgttt
ggtctcagtatggtggtgtgagttcctgagggctttaaggtcagaggcag
gatttacgctcttgatttgtttcactgctccaggaggctgttgcacataa
aggaacaatttggatatacaggataaaccctgccttttttcggagttcct
ttgtgtgtttgtgtgcacgtacattcagctctatctcagagatccgtgta
ctgtggtgtgcagaacatgttcatgtgcttgtggctgctttatgtccacc
ttcgcggcgtcaccttgtcccgcgtcggcttcttctctcatgtcagagaa
tgctcacagtttttcaagagtgaccacgtagcagggacagtatgtgccaa
ttgctgaatcttatctagtgtctgtgccaggcaatctttcagatccttcc
agatgtttatcttacagaaaactgtcagagtgggtggcatttgctttcat
ggcgcagatgggagactctggttcacagagcttaatgtgaatgaactaaa
ggaagactgctaggccagggcacgtaggacttcaggtccccaaagaatga
cttctgcattaatagcttacaaaaaatcaaaggccaataaggcttcatga
caccaaaaattatgtgatattcccatttggtgtcttaaactagctgtatt
agaacattgctacattttctctgtcccatctgcttcgtgtctctctgtcc
cgtccactgctggtcagtggcagaggtgagcagagatgggatggtatcat
ccacaacaccaaggatgctgtggatctgattacagatagactgtgccagc
tctgttctgagttgcctccacttctgttagcactgtgaatcaagccatgg
gctttgtggttctccttcatccgatcagcccttgcaaggtaaatgcttgt
ccacatttactgcagagagccaagcactgcaaagggaggtggactgagct
tagcaagggagtaactctcagtctcatctatggggctggaagttacagtc
gaaagcacaggacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_153182574_153183443
seq2: B6Ng01-042P08.b_41_912

seq1  GAATTCAGTCGGGACAATGCATTCTTCTCACATGTCCGCACCAAGCATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCGGGACAATGCATTCTTCTCACATGTCCGCACCAAGCATTG  50

seq1  TACCTCCAAGTGACAAGAAGCATCGGAGAAGAGTAAGGATGAAGGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCCAAGTGACAAGAAGCATCGGAGAAGAGTAAGGATGAAGGAGAGA  100

seq1  AGGAAGGATGGAGGAAGGAAGCATTATCGTCTTATGAACAGAAAGCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGATGGAGGAAGGAAGCATTATCGTCTTATGAACAGAAAGCTAAA  150

seq1  TTATCTGAAAATATTCAGATTCTAAGGAGAGATGGAGTTTACCCCAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGAAAATATTCAGATTCTAAGGAGAGATGGAGTTTACCCCAAGAA  200

seq1  GGAAAACTCAGAAATAGGTCCTCTCTCTTCCTCCTCACCCAGAGCCTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACTCAGAAATAGGTCCTCTCTCTTCCTCCTCACCCAGAGCCTGCT  250

seq1  GTGGAGATGCAGTGGGACCCCAGTGGGAAGCATGGAGCATCCCAGTTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGATGCAGTGGGACCCCAGTGGGAAGCATGGAGCATCCCAGTTAAT  300

seq1  AGAAAGTGAGTGAGGCCAGCCCCAGTGTGTTAACCAGACTTGTTGCTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGAGTGAGGCCAGCCCCAGTGTGTTAACCAGACTTGTTGCTGGC  350

seq1  ACACCGCTCAGATCAACATTCTCTATGTGGCACCCACTATGAGCTCAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGCTCAGATCAACATTCTCTATGTGGCACCCACTATGAGCTCAGGG  400

seq1  GAATCTGTGTTTTCCAAAAACCCAGCTTTGAGGGAATCACTGGAAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGTGTTTTCCAAAAACCCAGCTTTGAGGGAATCACTGGAAGACAA  450

seq1  AATCTTCTTCCACAGGAAGAGCAGTGGATAGCTACAGGACACACTGTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTTCCACAGGAAGAGCAGTGGATAGCTACAGGACACACTGTCCC  500

seq1  AGCAAGGGCCATCATCCCCAGGGGAGGGGAGGGGATGGTACAGTTTACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGGCCATCATCCCCAGGGGAGGGGAGGGGATGGTACAGTTTACCT  550

seq1  TGTGCCCAGCGAGCATCAGGCAAGACAGCTAGAGCTTTCTGTGAGGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCAGCGAGCATCAGGCAAGACAGCTAGAGCTTTCTGTGAGGGAGA  600

seq1  CAGTTTTTAGAGGGAACCTAGTTACACACTCAAGTCGAGTGACATCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTAGAGGGAACCTAGTTACACACTCAAGTCGAGTGACATCACAG  650

seq1  AGTCACTTAACCTCGGTCACCCTGC-TTTGGCTCCTTGTGCCTGTTTTCC  699
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGTCACTTAACCTCGGTCACCCTGCTTTTGGCTCCTTGTGCCTGTTTTCC  700

seq1  CACCTGAAAAT-AAAGCAAATAAAAGTACCTAACAAACACGATTGCTTAA  748
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAAAATAAAAGCAAATAAAAGTACCTAACAAACACGATTGCTTAA  750

seq1  AAGTTTAAATGACTGGCTATATATAAAGATCCTTTGGAACATTTCCTAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAAATGACTGGCTATATATAAAGATCCTTTGGAACATTTCCTAGT  800

seq1  AACAAGAACATTGTAATCAGAGGTGGC-TTTTATTATGACATGGTTTCAT  847
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  AACAAGAACATTGTAATCAGAGGTGGCTTTTTATTATGACATGGTTTC-T  849

seq1  AAGACACCTTCCAACCATTAATC  870
      |||||||||| | ||||||||||
seq2  AAGACACCTTTCCACCATTAATC  872

seq1: chr3_153377713_153378778
seq2: B6Ng01-042P08.g_68_1132 (reverse)

seq1  AGGTCCTGTGC-TTCGGCTGTGACTTCCAGCCCCATAGATGAGACTGAGG  49
      ||||||||||| |||| |||| |||||||||||||||||||||||||| |
seq2  AGGTCCTGTGCTTTCGACTGTAACTTCCAGCCCCATAGATGAGACTGA-G  49

seq1  AGTTACTCCCTTGCTAAGCTTCAGTCCCCCTCCCTTTGCAGTGCTTGGCT  99
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  AGTTACTCCCTTGCTAAGC-TCAGTCCACCTCCCTTTGCAGTGCTTGGCT  98

seq1  CTCTTGCAGTAAATGTGGAC-AGCATTTACCTTGCAAGGGCTGATCGGAT  148
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTC-TGCAGTAAATGTGGACAAGCATTTACCTTGCAAGGGCTGATCGGAT  147

seq1  GAAGGAGAACCACAAAGCCCATGGCTTGATTCACAGTGCTAACAGAAGTG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGAACCACAAAGCCCATGGCTTGATTCACAGTGCTAACAGAAGTG  197

seq1  GAGGCAACTCAGAACAGAGCTGGCACAGTCTATCTGTAATCAGATCCACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAACTCAGAACAGAGCTGGCACAGTCTATCTGTAATCAGATCCACA  247

seq1  GCATCCTTGGTGTTGTGGATGATACCATCCCATCTCTGCTCACCTCTGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTTGGTGTTGTGGATGATACCATCCCATCTCTGCTCACCTCTGCC  297

seq1  ACTGACCAGCAGTGGACGGGACAGAGAGACACGAAGCAGATGGGACAGAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCAGCAGTGGACGGGACAGAGAGACACGAAGCAGATGGGACAGAG  347

seq1  AAAATGTAGCAATGTTCTAATACAGCTAGTTTAAGACACCAAATGGGAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAGCAATGTTCTAATACAGCTAGTTTAAGACACCAAATGGGAAT  397

seq1  ATCACATAATTTTTGGTGTCATGAAGCCTTATTGGCCTTTGATTTTTTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATAATTTTTGGTGTCATGAAGCCTTATTGGCCTTTGATTTTTTGT  447

seq1  AAGCTATTAATGCAGAAGTCATTCTTTGGGGACCTGAAGTCCTACGTGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATTAATGCAGAAGTCATTCTTTGGGGACCTGAAGTCCTACGTGCC  497

seq1  CTGGCCTAGCAGTCTTCCTTTAGTTCATTCACATTAAGCTCTGTGAACCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTAGCAGTCTTCCTTTAGTTCATTCACATTAAGCTCTGTGAACCA  547

seq1  GAGTCTCCCATCTGCGCCATGAAAGCAAATGCCACCCACTCTGACAGTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTCCCATCTGCGCCATGAAAGCAAATGCCACCCACTCTGACAGTTT  597

seq1  TCTGTAAGATAAACATCTGGAAGGATCTGAAAGATTGCCTGGCACAGACA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAGATAAACATCTGGAAGGATCTGAAAGATTGCCTGGCACAGACA  647

seq1  CTAGATAAGATTCAGCAATTGGCACATACTGTCCCTGCTACGTGGTCACT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAAGATTCAGCAATTGGCACATACTGTCCCTGCTACGTGGTCACT  697

seq1  CTTGAAAAACTGTGAGCATTCTCTGACATGAGAGAAGAAGCCGACGCGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAAACTGTGAGCATTCTCTGACATGAGAGAAGAAGCCGACGCGGG  747

seq1  ACAAGGTGACGCCGCGAAGGTGGACATAAAGCAGCCACAAGCACATGAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTGACGCCGCGAAGGTGGACATAAAGCAGCCACAAGCACATGAAC  797

seq1  ATGTTCTGCACACCACAGTACACGGATCTCTGAGATAGAGCTGAATGTAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTGCACACCACAGTACACGGATCTCTGAGATAGAGCTGAATGTAC  847

seq1  GTGCACACAAACACACAAAGGAACTCCGAAAAAAGGCAGGGTTTATCCTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACAAACACACAAAGGAACTCCGAAAAAAGGCAGGGTTTATCCTG  897

seq1  TATATCCAAATTGTTCCTTTATGTGCAACAGCCTCCTGGAGCAGTGAAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCAAATTGTTCCTTTATGTGCAACAGCCTCCTGGAGCAGTGAAAC  947

seq1  AAATCAAGAGCGTAAATCCTGCCTCTGACCTTAAAGCCCTCAGGAACTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAGAGCGTAAATCCTGCCTCTGACCTTAAAGCCCTCAGGAACTCA  997

seq1  CACCACCATACTGAGACCAAACAGCAAACTTGCACATCCCACAGAGCAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCATACTGAGACCAAACAGCAAACTTGCACATCCCACAGAGCAGC  1047

seq1  AGACCCTGGGGAGAATTC  1066
      ||||||||||||||||||
seq2  AGACCCTGGGGAGAATTC  1065