BAC Information

Click to search

BAC

Clone NameB6Ng01-043E09
Chromosome3 (Build37)
Map Location 144,489,213 - 144,577,560
singlet/doubletdoublet
Overlap geneClca4, EG622139, AI747448
Upstream geneLOC100039938, LOC100039952, Lmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2
Downstream geneClca6, Clca3, Clca5, Odf2l, Col24a1, 2410019A14Rik, Cyr61, Ddah1, LOC100040331
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043E09.bB6Ng01-043E09.g
ACCDH869386DH869387
length1,084624
definitionDH869386|Mus musculus domesticus DNA, BAC clone: B6Ng01-043E09, 5' end.DH869387|Mus musculus domesticus DNA, BAC clone: B6Ng01-043E09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,576,478 - 144,577,560)(144,489,213 - 144,489,835)
sequence
gaattccatgttttctctcattacaacaataattcttcaactatctctcc
ccaattcccagtcccttctacagtgcgtgtaacttcatgctccttgcttc
atttctgggtattttactagattaccagataagcaattagatcatgggga
acgaactaatttaaaattccttcactggaaaaaaagaaaaagaaatagat
ggccgatagctgaggccagcactgcatgcttctgtgtacagaggagtcac
ttgaaggactgctcaggtgcttccctaggtggtctggggaatctgcatgt
ctgacaatccccagatatttagagggacacagatgtggttgatacaagaa
cattgttctctcttctgtgtagaatggggaaatacattttcaacttatca
ggtgccccctatgcttatcgttgtaagagaggacttatgctacaacattt
cttagatacccaagcatttattcctagaggaaaatgtttcttttctctgt
tgaactacagatgtagtaaatgatttggagaacaaaaagaaaacaaaaca
aagaaaagaaaagaaaagaaaagaaaagaaaagaaaagaaaagagaagaa
aggaacagaagttgttgatcataaaataaaataagttaattgcattatca
atgaggaataatgataataaagtcttgcctaagaaacatttgccacagga
agggcctcacatatataaacagaaaataacacgggaagattaatgtagag
aactgaaagtcaatcaattataagagaaatgataagaagagtcttatgac
atctgcataagttggtagggcacaaagagataatatgttaaagtaattat
gaaacatacacaattataagtgtgggttatcatgttatatgagtatatat
gtatatatatatatatacatatatataatatacccaaagtgagtcaagaa
tactcattcaataattgtattaatatttatatcaaagtgagtcaagatac
atcatttctatatgggatgatttgggcagaaactgatgggagataccctc
ccttcctatgtgaaactgtacgcgcagcaacaga
gaattcttagtaggtgttcagtcctttttttgtggtgctcatttaaataa
tgattggggctcctatttcatataaaaagcttatcaaaataagaaaatat
aaagatagccgggcagtggtggtgcacgcctttaatcccagcacttggga
ggcagaggcaggtggatttctgagtttaaggccagcctggtcttcaaagt
gagttccaagatagccagggctacacagagaaaccatgtctcgaaaaaac
aaaacaaaaaaacaaaaaacaaaaacaacaacaacaaaaaacaaaaacaa
aaacaaaaaaaagaaaaaagaagaaaaaaaaaaagaaaaagaaaatataa
agataacaaagtggattaaaacactgccgccagaagtgagaaaaatggtc
ctcgagttccttccatggttcaagtaaaactaatgaactttaaggatgac
agtgtactgttagcattttgtctaaactttgccccacagttacctggcaa
tagccaggtgtgtctgactcactataaatggggctgcttgccccctcctc
tctctcttattcttactttcctgctcccgctgtgctctctccccattccc
ttctctacccccctctatgtcctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144576478_144577560
seq2: B6Ng01-043E09.b_44_1127 (reverse)

seq1  TCTGTTGCTGTGCTTACAGTTTCACATTAGAATGGAGTGTATCT-CCATC  49
      |||||||||| || |||||||||||||  ||| |||| |||||| |||||
seq2  TCTGTTGCTGCGCGTACAGTTTCACATAGGAAGGGAGGGTATCTCCCATC  50

seq1  AGTTTCTGCCCAAATAATACATTATTG-AATGATGTATTCTTGACTCACT  98
      ||||||||||||||| || |  ||| | ||||||||| ||||||||||||
seq2  AGTTTCTGCCCAAATCATCCCATATAGAAATGATGTA-TCTTGACTCACT  99

seq1  TTGATATATATATTAATAC-ATTATTGAATGATGTATTCTTGACTCACTT  147
      |||||||| |||||||||| |||||||||||| |||||||||||||||||
seq2  TTGATATAAATATTAATACAATTATTGAATGA-GTATTCTTGACTCACTT  148

seq1  T-GGTATATATATATATATGTATATATATATATATACATATATACTCATA  196
      | ||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATAT-TATATATATGTATATATATATATATACATATATACTCATA  197

seq1  TAACATGATAACCCACACTTATAATTGTGTATGTTTCATAATTACTTTAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGATAACCCACACTTATAATTGTGTATGTTTCATAATTACTTTAA  247

seq1  CATATTATCTCTTTGTGCCCTACCAACTTATGCAGATGTCATAAGACTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTATCTCTTTGTGCCCTACCAACTTATGCAGATGTCATAAGACTCT  297

seq1  TCTTATCATTTCTCTTATAATTGATTGACTTTCAGTTCTCTACATTAATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCATTTCTCTTATAATTGATTGACTTTCAGTTCTCTACATTAATC  347

seq1  TTCCCGTGTTATTTTCTGTTTATATATGTGAGGCCCTTCCTGTGGCAAAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGTGTTATTTTCTGTTTATATATGTGAGGCCCTTCCTGTGGCAAAT  397

seq1  GTTTCTTAGGCAAGACTTTATTATCATTATTCCTCATTGATAATGCAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTAGGCAAGACTTTATTATCATTATTCCTCATTGATAATGCAATT  447

seq1  AACTTATTTTATTTTATGATCAACAACTTCTGTTCCTTTCTTCTCTTTTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTTTATTTTATGATCAACAACTTCTGTTCCTTTCTTCTCTTTTC  497

seq1  TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTGTTTTGTTTTCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTTCTTTGTTTTGTTTTCT  547

seq1  TTTTGTTCTCCAAATCATTTACTACATCTGTAGTTCAACAGAGAAAAGAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTCTCCAAATCATTTACTACATCTGTAGTTCAACAGAGAAAAGAA  597

seq1  ACATTTTCCTCTAGGAATAAATGCTTGGGTATCTAAGAAATGTTGTAGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTCCTCTAGGAATAAATGCTTGGGTATCTAAGAAATGTTGTAGCA  647

seq1  TAAGTCCTCTCTTACAACGATAAGCATAGGGGGCACCTGATAAGTTGAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCTCTCTTACAACGATAAGCATAGGGGGCACCTGATAAGTTGAAA  697

seq1  ATGTATTTCCCCATTCTACACAGAAGAGAGAACAATGTTCTTGTATCAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTTCCCCATTCTACACAGAAGAGAGAACAATGTTCTTGTATCAAC  747

seq1  CACATCTGTGTCCCTCTAAATATCTGGGGATTGTCAGACATGCAGATTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGTGTCCCTCTAAATATCTGGGGATTGTCAGACATGCAGATTCC  797

seq1  CCAGACCACCTAGGGAAGCACCTGAGCAGTCCTTCAAGTGACTCCTCTGT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCACCTAGGGAAGCACCTGAGCAGTCCTTCAAGTGACTCCTCTGT  847

seq1  ACACAGAAGCATGCAGTGCTGGCCTCAGCTATCGGCCATCTATTTCTTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAAGCATGCAGTGCTGGCCTCAGCTATCGGCCATCTATTTCTTTT  897

seq1  TCTTTTTTTCCAGTGAAGGAATTTTAAATTAGTTCGTTCCCCATGATCTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTCCAGTGAAGGAATTTTAAATTAGTTCGTTCCCCATGATCTA  947

seq1  ATTGCTTATCTGGTAATCTAGTAAAATACCCAGAAATGAAGCAAGGAGCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTATCTGGTAATCTAGTAAAATACCCAGAAATGAAGCAAGGAGCA  997

seq1  TGAAGTTACACGCACTGTAGAAGGGACTGGGAATTGGGGAGAGATAGTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTACACGCACTGTAGAAGGGACTGGGAATTGGGGAGAGATAGTTG  1047

seq1  AAGAATTATTGTTGTAATGAGAGAAAACATGGAATTC  1083
      |||||||||||||||||||||||||||||||||||||
seq2  AAGAATTATTGTTGTAATGAGAGAAAACATGGAATTC  1084

seq1: chr3_144489213_144489835
seq2: B6Ng01-043E09.g_69_692

seq1  GAATTCTTAGTAGGTGTTCAGTCCTTTTTTTGTGGTGCTCATTTAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTAGGTGTTCAGTCCTTTTTTTGTGGTGCTCATTTAAATAA  50

seq1  TGATTGGGGCTCCTATTTCATATAAAAAGCTTATCAAAATAAGAAAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGGGGCTCCTATTTCATATAAAAAGCTTATCAAAATAAGAAAATAT  100

seq1  AAAGATAGCCGGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATAGCCGGGCAGTGGTGGTGCACGCCTTTAATCCCAGCACTTGGGA  150

seq1  GGCAGAGGCAGGTGGATTTCTGAGTTTAAGGCCAGCCTGGTCTTCAAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGTGGATTTCTGAGTTTAAGGCCAGCCTGGTCTTCAAAGT  200

seq1  GAGTTCCAAGATAGCCAGGGCTACACAGAGAAACCATGTCTCGAAAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCAAGATAGCCAGGGCTACACAGAGAAACCATGTCTCGAAAAAAC  250

seq1  AAAACAAAAAAACAAAAAACAAAAACAACAACAACAAAAAACAAAAACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAAACAAAAAACAAAAACAACAACAACAAAAAACAAAAACAA  300

seq1  AAACAAAAAAAAGAAAAAAGAAGAAAAAAAAAAAGAAAAAGAAAATATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAAAAAGAAAAAAGAAGAAAAAAAAAAAGAAAAAGAAAATATAA  350

seq1  AGATAACAAAGTGGATTAAAACACTGCCGCCAGAAGTGAGAAAAATGGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAACAAAGTGGATTAAAACACTGCCGCCAGAAGTGAGAAAAATGGTC  400

seq1  CTCGAGTTCCTTCCATGGTTCAAGTAAAACTAATGAACTTTAAGGATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGTTCCTTCCATGGTTCAAGTAAAACTAATGAACTTTAAGGATGAC  450

seq1  AGTGTACTGTTAGCATTTTGTCTAAACTTTGCCCCACAGTTACCTGGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTGTTAGCATTTTGTCTAAACTTTGCCCCACAGTTACCTGGCAA  500

seq1  TAGCCAGGTGTGTCTGACTCACTATAAATGGGGCTGCTTGCCCCCTCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAGGTGTGTCTGACTCACTATAAATGGGGCTGCTTGCCCCCTCCTC  550

seq1  TCTCTCTTATTCTTACTTTCCTGCTCCCGCTGTGCTCTCTCCCCATTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTTATTCTTACTTTCCTGCTCCCGCTGTGCTCTCTCCCCATTCCC  600

seq1  TTCTCTA-CCCCCTCTATGTCCTC  623
      ||||||| ||||||||||||||||
seq2  TTCTCTACCCCCCTCTATGTCCTC  624