BAC Information

Click to search

BAC

Clone NameB6Ng01-043H21
Chromosome3 (Build37)
Map Location 41,059,187 - 41,059,737
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043H21.bB6Ng01-043H21.g
ACCDH869537DH869538
length9451,148
definitionDH869537|Mus musculus domesticus DNA, BAC clone: B6Ng01-043H21, 5' end.DH869538|Mus musculus domesticus DNA, BAC clone: B6Ng01-043H21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagctctgagccccatttttaatggggttatttgattt
tctggagtcgaccttcttgagttctttatatatgttggatattagtcccc
tatctgatttgggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacggcgtcttttgccttgcagaagctttggagtttcat
gaggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tattcaggaaattttcccctgtacccatgtcttcgaggcttttccctact
ttctccactataagtttcagtgtctctggttttatgtgcagttccttaat
ccacttagatttgaccttagtacaaggagatagaaatggatcaattcaca
ttcttctacatgataaccgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtaggttcatctctgggtcttcaaatctgttccattggt
ctacttgtctgtcactataccagtaccatgcagtttttatcacaattgct
ctgtagtacagttttaggtccggcatgttgattccaccagaggttctttt
atccttcagaagagtgtttgctatcctaggttttttgttattccagatga
atctgccgattgcctttctaattcgttgaagaattgagttgaaattttta
tggggattgcattgaatctgtagattgcttttggcaagatagccattttt
acaatgttgatcctgccaatccgtgagcatgggagatctttccatcttct
gagatcttctttaatttctttcttcagagacttgaagttcttatcataca
gatctttcacttccttagttagagtcacgccaaggtattttatat
gaattctcacctgaggaataccgaatggctgagaaacacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagttagaatggctaagataaaaaattcaggtgacagc
agatgctagggaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaattagtctggcggttcctca
gaaaattggacatagtactactgtaggatcctgcaatacctctcctgggc
atatatccagatgtcccaaccggtaagaaggacacatgctccactatgtt
catagcagccttatttataatagccagacactggaaagaactcggatgcc
cctcaacagaggaatggatacaaaaaatgtggtacatttacataatggag
tactattcagctattaaaaagaatgaatttatgaaattcctaggcaaatg
gatggacctgggggcatcatcctgagtgaggtaacacaatcacaaaagaa
ttcaaatgatatgtactcactgataagtggatattagcccagaaacttag
tatacccgagatataaggtacaatttgcaaaacccatgaaactgaagtag
aacgaagatcaacgtgtggacactttgccccttcttcgaattggaaacaa
tcacccatggaaagagttacagagacaaagtttggagctgagacaaaagc
atggaccatctagagactgccacatgcagggatccattgcataattagcc
tccaaacgctgacaccattgcatacactagcaagcgttggctgaaaggac
cctgatatagctgtctcttgtgagactaggcggggcctagcaaacatata
agtggttgctcacagtcatctatgagtgagcacaggccccaatgagagta
gagaagtatctatgagctaagagatctgcacctgtaggtgcaacatattg
aactaccagtacctgagctctgactctagctgcatattgatcaaagagtg
ctagtcgcctcacttgaaagaggatccatgacactcgtacttatatgtcc
taatacagggagctcaggtcaaatatggaatggtgtgtgaaagaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059187_41059737
seq2: B6Ng01-043H21.b_45_595 (reverse)

seq1  AGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATG  50
      |||||||||||| ||| |||||||| |||| | ||| | |||||||||||
seq2  AGACCAATGGAACAGATTTGAAGACCCAGAGATGAACCTACACACCTATG  50

seq1  GTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGAC  100
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGAC  100

seq1  AGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAG  150
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  AGCATTTTCAACAAATGGTGCTGGCACAACTGGCGGTTATCATGTAGAAG  150

seq1  AATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGT  200
      |||| ||||||||||| | |||||||||||||||||||||||||||||||
seq2  AATGTGAATTGATCCATTTCTATCTCCTTGTACTAAGGTCAAATCTAAGT  200

seq1  GGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAG  250
      |||| |||||||  ||||||||||||||||||||||||||||||| ||||
seq2  GGATTAAGGAACTGCACATAAAACCAGAGACACTGAAACTTATAGTGGAG  250

seq1  AAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCA  300
      ||||| ||||||||||| ||||| ||||  ||||||||||| |||||| |
seq2  AAAGTAGGGAAAAGCCTCGAAGACATGGGTACAGGGGAAAATTTCCTGAA  300

seq1  TAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACC  350
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  TAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACC  350

seq1  TCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACA  400
      |||||||||| |||||||||||||||||||||||| ||||||||||||||
seq2  TCATGAAACTCCAAAGCTTCTGCAAGGCAAAAGACGCCGTCAATAAGACA  400

seq1  AAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGA  449
      |||||| |||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCCAAATCAGA  450

seq1  TAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCA  499
      |||||||||||||||||| |||||| |||||||||||||||| || ||||
seq2  TAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTCGACTCCA  500

seq1  GAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAA  549
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  GAAAATCAAATAACCCCATT-AAAAATGGGGCTCAGAGCTGAACAAAGAA  549

seq1  TT  551
      ||
seq2  TT  551