BAC Information

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BAC

Clone NameB6Ng01-043K03
Chromosome3 (Build37)
Map Location 79,141,478 - 79,299,885
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741
Downstream geneLOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043K03.bB6Ng01-043K03.g
ACCDH869637DH869638
length6241,048
definitionDH869637|Mus musculus domesticus DNA, BAC clone: B6Ng01-043K03, 5' end.DH869638|Mus musculus domesticus DNA, BAC clone: B6Ng01-043K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,141,478 - 79,142,100)(79,298,831 - 79,299,885)
sequence
gaattctggtgggtgggggaggggtatattagctctttgcaatgtgttat
ttcagttgtctgataggtgaccggtaaagtcacaggtctctttctagaat
attttctctctgtactagggccattattataattttggcctgcaatacct
tctggaaatcctgtaagaaaatgtctcatcaaaaggatggaccatctaga
gactgccatatccagagatccattccataattagcctccaaacgctgaca
ccgttgcatacactagcaagagtttgctgaaaggaccctgatatagctgt
ctcttgtgagactaggctggggcctagcaaacacataagtagatgctcac
agtcagctattggatggagcacagggcccctaatggaggagctagagaaa
gtatccaaggagctaaagagatctgcaaccctgtaggtgcaacattatga
actaactagtaccccagagctcttgactctagctgcatatgtatcaaaag
atggcctactcggtcatcactggaaagagaggcccattggacatgcaaac
tttatatgccccaatacaggggaatgccagggccaaaaaaatgggaatgg
tgggtagggaagtcgggggggaga
gaattccatgcctcctctgtgtgatgggaaaggcttaagtgagtagccat
ggtgtgagtgtgtgtgtgtgtgtgtgtgcacgcgcgcacgcatgcatgtg
cgctcatgttttaaaacccactaactggtctgagtgcttccggatcttcc
ctgtagtgcatcgcagagcatccagtagcatgagctggagctgatgggtc
agtcaggatgagcatctggtcactgttgatttccaagagcctgcatcctg
ggttataactctacaatcgttgccagagagctttctgtccccaagcaagc
gctgtttcagtttgtgtactccaaaacagcttgtgcagcacacatggacc
tggagagaggatgaaaaagtatctggctatacagttggttctctgaaaca
ttcccaagcattctctgttgtggaataatacttaaaagataatcaggaca
ctggtttgtttcactgtggagagctgatccaggactacacactaaagtcc
agtggctttagatgctcgaagagatgtgtgatggagacagtgagatgtgg
cctcggttcagccagggaagctttacagcattcagcaggtggcactctct
gccgtgctaaagctcatagctgtggtgacgtagtttagagggagagaagg
aggtgaatgacagcccagcgatggccacagttttgcgcatgaaagtccaa
gtggcttgaggaggatgcgagtgctttgcttttgagaaaggtgagaaata
gaacattcagcaaagaggcaagttttacatgatcacactgttaagctgtc
cttggacttgagttcaaccctatatcctcagccttgtctgcctcagcctc
ttgagttggtggggatagcagatgtgcaccaccacacttggctagatctc
tatttgtgtaacaagaataaactggtgcataaggaccagctttaaataca
gggactttataacaagataggagcctttcaaatagcaggcactttctgtt
gaaaactgtgacagctgcatgattctccagctttttctgtctaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79141478_79142100
seq2: B6Ng01-043K03.b_44_666

seq1  GAATTCTGGTGGGTGGGGGAGGGGTATATTAGCTCTTTGCAATGTGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTGGGTGGGGGAGGGGTATATTAGCTCTTTGCAATGTGTTAT  50

seq1  TTCAGTTGTCTGATAGGTGACCGGTAAAGTCACAGGTCTCTTTCTAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGTCTGATAGGTGACCGGTAAAGTCACAGGTCTCTTTCTAGAAT  100

seq1  ATTTTCTCTCTGTACTAGGGCCATTATTATAATTTTGGCCTGCAATACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTCTGTACTAGGGCCATTATTATAATTTTGGCCTGCAATACCT  150

seq1  TCTGGAAATCCTGTAAGAAAATGTCTCATCAAAAGGATGGACCATCTAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAATCCTGTAAGAAAATGTCTCATCAAAAGGATGGACCATCTAGA  200

seq1  GACTGCCATATCCAGAGATCCATTCCATAATTAGCCTCCAAACGCTGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCCATATCCAGAGATCCATTCCATAATTAGCCTCCAAACGCTGACA  250

seq1  CCGTTGCATACACTAGCAAGAGTTTGCTGAAAGGACCCTGATATAGCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGCATACACTAGCAAGAGTTTGCTGAAAGGACCCTGATATAGCTGT  300

seq1  CTCTTGTGAGACTAGGCTGGGGCCTAGCAAACACATAAGTAGATGCTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTGAGACTAGGCTGGGGCCTAGCAAACACATAAGTAGATGCTCAC  350

seq1  AGTCAGCTATTGGATGGAGCACAGGGCCCCTAATGGAGGAGCTAGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGCTATTGGATGGAGCACAGGGCCCCTAATGGAGGAGCTAGAGAAA  400

seq1  GTATCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCAACATTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCAAGGAGCTAAAGAGATCTGCAACCCTGTAGGTGCAACATTATGA  450

seq1  ACTAACTAGTACCCCAGAGCTCTTGACTCTAGCTGCATATGTATCAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTAGTACCCCAGAGCTCTTGACTCTAGCTGCATATGTATCAAAAG  500

seq1  ATGGCCTACTCGGTCATCACTGGAAAGAGAGGCCCATTGGACATGCAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTACTCGGTCATCACTGGAAAGAGAGGCCCATTGGACATGCAAAC  550

seq1  TTTATATGCCCCAATACAGGGGAATGCCAGGGCCAAAAAAATGGGAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATGCCCCAATACAGGGGAATGCCAGGGCCAAAAAAATGGGAATGG  600

seq1  TGGGTAGGGAAGTCGGGGGGGAG  623
      |||||||||||||||||||||||
seq2  TGGGTAGGGAAGTCGGGGGGGAG  623

seq1: chr3_79298831_79299885
seq2: B6Ng01-043K03.g_64_1111 (reverse)

seq1  CATCCTAGTGACAGAAAAAGCTTGGAGAATCATGCAGACTGTCACAGATT  50
      |||||||  |||||||||||| ||||||||||||||| ||||||||| ||
seq2  CATCCTA--GACAGAAAAAGC-TGGAGAATCATGCAG-CTGTCACAG-TT  45

seq1  TTCACACAGAAAGTGACCTGCTATTTGAAAAGGCTCCTACTCTTGTTATA  100
      |||| |||||||||| ||||||||||| ||||||||||| ||||||||||
seq2  TTCA-ACAGAAAGTG-CCTGCTATTTG-AAAGGCTCCTA-TCTTGTTATA  91

seq1  AAGTCCCTGTATTAAAAGCTTGTTCCTATGCACCAGTTTATTTCTGTTAC  150
      ||||||||||||| |||||| || | ||||||||||||||||  ||||||
seq2  AAGTCCCTGTATTTAAAGCTGGTCCTTATGCACCAGTTTATTCTTGTTAC  141

seq1  ACAAATAGAGATTCTAGCCAAGTGTGGTGGTGCACATCTGCAAT-CCCAC  199
      ||||||||||| ||||||||||||||||||||||||||||| || |||||
seq2  ACAAATAGAGA-TCTAGCCAAGTGTGGTGGTGCACATCTGCTATCCCCAC  190

seq1  CAACTCAAGAGGCTGAGGCAGAC-AGGCTGAGGATATAGGTTTGAACTCA  248
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  CAACTCAAGAGGCTGAGGCAGACAAGGCTGAGGATATAGGGTTGAACTCA  240

seq1  AGTCCAAGGACAGCTTAACAGTGTGATCATGTAAAACTTGCCTCTTTGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAGGACAGCTTAACAGTGTGATCATGTAAAACTTGCCTCTTTGCT  290

seq1  GAATGTTCTATTTCTCACCTTTCTCAAAAGCAAAGCACTCGCATCCTCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTCTATTTCTCACCTTTCTCAAAAGCAAAGCACTCGCATCCTCCT  340

seq1  CAAGCCACTTGGACTTTCATGCGC-AAACTGTGGCCATCGCTGGGCTGTC  397
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAAGCCACTTGGACTTTCATGCGCAAAACTGTGGCCATCGCTGGGCTGTC  390

seq1  ATTCACCTCCTTCTCTCCCTCTAAACTACGTCACCACAGCTATGAGCTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACCTCCTTCTCTCCCTCTAAACTACGTCACCACAGCTATGAGCTTT  440

seq1  AGCACGGCAGAGAGTGCCACCTGCTGAATGCTGTAAAGCTTCCCTGGCTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGCAGAGAGTGCCACCTGCTGAATGCTGTAAAGCTTCCCTGGCTG  490

seq1  AACCGAGGCCACATCTCACTGTCTCCATCACACATCTCTTCGAGCATCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGAGGCCACATCTCACTGTCTCCATCACACATCTCTTCGAGCATCTA  540

seq1  AAGCCACTGGACTTTAGTGTGTAGTCCTGGATCAGCTCTCCACAGTGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACTGGACTTTAGTGTGTAGTCCTGGATCAGCTCTCCACAGTGAAA  590

seq1  CAAACCAGTGTCCTGATTATCTTTTAAGTATTATTCCACAACAGAGAATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGTGTCCTGATTATCTTTTAAGTATTATTCCACAACAGAGAATG  640

seq1  CTTGGGAATGTTTCAGAGAACCAACTGTATAGCCAGATACTTTTTCATCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAATGTTTCAGAGAACCAACTGTATAGCCAGATACTTTTTCATCC  690

seq1  TCTCTCCAGGTCCATGTGTGCTGCACAAGCTGTTTTGGAGTACACAAACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCAGGTCCATGTGTGCTGCACAAGCTGTTTTGGAGTACACAAACT  740

seq1  GAAACAGCGCTTGCTTGGGGACAGAAAGCTCTCTGGCAACGATTGTAGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGCGCTTGCTTGGGGACAGAAAGCTCTCTGGCAACGATTGTAGAG  790

seq1  TTATAACCCAGGATGCAGGCTCTTGGAAATCAACAGTGACCAGATGCTCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACCCAGGATGCAGGCTCTTGGAAATCAACAGTGACCAGATGCTCA  840

seq1  TCCTGACTGACCCATCAGCTCCAGCTCATGCTACTGGATGCTCTGCGATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACTGACCCATCAGCTCCAGCTCATGCTACTGGATGCTCTGCGATG  890

seq1  CACTACAGGGAAGATCCGGAAGCACTCAGACCAGTTAGTGGGTTTTAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAGGGAAGATCCGGAAGCACTCAGACCAGTTAGTGGGTTTTAAAA  940

seq1  CATGAGCGCACATGCATGCGTGCGCGCGTGCACACACACACACACACACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCGCACATGCATGCGTGCGCGCGTGCACACACACACACACACACA  990

seq1  CTCACACCATGGCTACTCACTTAAGCCTTTCCCATCACACAGAGGAGGCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACCATGGCTACTCACTTAAGCCTTTCCCATCACACAGAGGAGGCA  1040

seq1  TGGAATTC  1055
      ||||||||
seq2  TGGAATTC  1048