BAC Information

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BAC

Clone NameB6Ng01-043M06
Chromosome3 (Build37)
Map Location 83,885,250 - 84,032,983
singlet/doubletdoublet
Overlap geneMnd1, Trim2, EG624713
Upstream geneEG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik
Downstream gene6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043M06.bB6Ng01-043M06.g
ACCDH869729DH869730
length1,076441
definitionDH869729|Mus musculus domesticus DNA, BAC clone: B6Ng01-043M06, 5' end.DH869730|Mus musculus domesticus DNA, BAC clone: B6Ng01-043M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,885,250 - 83,886,333)(84,032,538 - 84,032,983)
sequence
gaattcttcatgaataggaactttttttggtcaaggaattcattctcaga
actcccacaaatgtgccaagagatatgtttagaaatgttctttcaatata
gtctgaaataagatgaaaaccaaatgtccaccaatcttggctcaacaaac
ttacattacatcttcatgagacacagtagagagcaagtgagtgaattaaa
ctgtggcctcatctgtaacggtatctacattttaagtggaagacaatgat
acacatggagtgacctaattttgtttttgttatttcagatttatagttga
ataccgcagggacaaaatgttcccaatattgcataaactgttcaggaaca
catgaaatgataaaatgtccaaatatcttttaggaagcaaatataacatg
ggtactaaatttataaaaaatattttataatattgtaaatatactctgca
tcatatgaagaaaacaactctctgcaatcaagagaattatgtgagagaga
atatggatggttatacagtaagaaacacagcaacaccattttacctcagt
agacttaggaagatcataacattttccagatagagaggaagaaaaccctt
tgacaaactcaacaggcattctgtctaaaaatactcaaaacataaataaa
caaaatgttcttctacagttataagcatgaagaaaccaactcggtactga
ccaggaagcttcctccttgatggctagccttcatagtactagaaggtgcg
atgcaggctgcttagaggaaaaaaagccattatcagtcttacccagctgt
gaaccctgtgagttgactaagctggcagctatgcccaaaggtgcaataat
ggtacagatgttatgggagtaacccactactttgtttggatttaatgccc
attcacagcagaaatccctggcactataaaactggccaagaacccatgct
tgcaagcatcacattctgcgcaagccggcacctgaactcatacttctata
gcagcaagtctcaccttggagctggcatagtgtgcatgccttaaatccag
tacttgggtggtgaagggaagtagat
tcgcctgccacgcgggaggcccgggttcgattcccggccaatgcacatct
aaattttttttttttctgaaaagctttttttaatgaaactaccaaaacga
aacaaaactacagaacaaaaacaaaaatacaaacaaacaaaacaacaaca
acaaaaaggttttaataccgtgaggaataaggttagccaacgagacctac
cgagggagggaaaggaagaaattctataagcaaagccatcagtatcaagg
aggagaacgcttgcctacacgttttagctgaagcaaggttggctttcgga
ggggaggggggagggacccattaccatagtaacgggaggcgtggctatgc
agaaccaggaagttcctggggcggctgcaagctgagattgttctgatggc
gtttttggtttggtttggttttggtttggtttggttgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83885250_83886333
seq2: B6Ng01-043M06.b_42_1117

seq1  GAATTCTTCATGAATAGGAACTTTTTTTGGTCAAGGAATTCATTCTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATGAATAGGAACTTTTTTTGGTCAAGGAATTCATTCTCAGA  50

seq1  ACTCCCACAAATGTGCCAAGAGATATGTTTAGAAATGTTCTTTCAATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCACAAATGTGCCAAGAGATATGTTTAGAAATGTTCTTTCAATATA  100

seq1  GTCTGAAATAAGATGAAAACCAAATGTCCACCAATCTTGGCTCAACAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAATAAGATGAAAACCAAATGTCCACCAATCTTGGCTCAACAAAC  150

seq1  TTACATTACATCTTCATGAGACACAGTAGAGAGCAAGTGAGTGAATTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTACATCTTCATGAGACACAGTAGAGAGCAAGTGAGTGAATTAAA  200

seq1  CTGTGGCCTCATCTGTAACGGTATCTACATTTTAAGTGGAAGACAATGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCCTCATCTGTAACGGTATCTACATTTTAAGTGGAAGACAATGAT  250

seq1  ACACATGGAGTGACCTAATTTTGTTTTTGTTATTTCAGATTTATAGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGGAGTGACCTAATTTTGTTTTTGTTATTTCAGATTTATAGTTGA  300

seq1  ATACCGCAGGGACAAAATGTTCCCAATATTGCATAAACTGTTCAGGAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCGCAGGGACAAAATGTTCCCAATATTGCATAAACTGTTCAGGAACA  350

seq1  CATGAAATGATAAAATGTCCAAATATCTTTTAGGAAGCAAATATAACATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATGATAAAATGTCCAAATATCTTTTAGGAAGCAAATATAACATG  400

seq1  GGTACTAAATTTATAAAAAATATTTTATAATATTGTAAATATACTCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTAAATTTATAAAAAATATTTTATAATATTGTAAATATACTCTGCA  450

seq1  TCATATGAAGAAAACAACTCTCTGCAATCAAGAGAATTATGTGAGAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATGAAGAAAACAACTCTCTGCAATCAAGAGAATTATGTGAGAGAGA  500

seq1  ATATGGATGGTTATACAGTAAGAAACACAGCAACACCATTTTACCTCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATGGTTATACAGTAAGAAACACAGCAACACCATTTTACCTCAGT  550

seq1  AGACTTAGGAAGATCATAACATTTTCCAGATAGAGAGGAAGAAAACCCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGGAAGATCATAACATTTTCCAGATAGAGAGGAAGAAAACCCTT  600

seq1  TGACAAACTCAACAGGCATTCTGTCTAAAAATACTCAAAACATAAATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAACTCAACAGGCATTCTGTCTAAAAATACTCAAAACATAAATAAA  650

seq1  CAAAATGTTCTTCTACAGTTATAAGCATGAAGAAACCAACTCGGTACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTTCTTCTACAGTTATAAGCATGAAGAAACCAACTCGGTACTGA  700

seq1  CCAGGAAGCTTCCTCCTTGATGGCTAGCCTTCATAGTACTAGAAGGTGCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGCTTCCTCCTTGATGGCTAGCCTTCATAGTACTAGAAGGTGCG  750

seq1  ATGCAGGCTGCTTAGAGGAAAAAAAGCCATTATCAGTCTTACCCAGCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGCTGCTTAGAGGAAAAAAAGCCATTATCAGTCTTACCCAGCTGT  800

seq1  GAACCCTGTGAGTTGACTAAGCTGGCAGGCTATGCCCAAAGGTGCAATAA  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAACCCTGTGAGTTGACTAAGCTGGCA-GCTATGCCCAAAGGTGCAATAA  849

seq1  TGGTACAGATGTTATGGGAGTAACCCACTACTTTGTTTGGATTTAATGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACAGATGTTATGGGAGTAACCCACTACTTTGTTTGGATTTAATGCC  899

seq1  CATTCCACAGGCAGAAATCCCTGGCACTATAAAACTGGCCAAGAACCCAT  950
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATT-CACA-GCAGAAATCCCTGGCACTATAAAACTGGCCAAGAACCCAT  947

seq1  GCTTGCAAGCATCACATTCTGCGCAAGCCGGCACCTGAACTCATACTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCAAGCATCACATTCTGCGCAAGCCGGCACCTGAACTCATACTTCT  997

seq1  ATAGGCAGCAAGGTCTCACCTTGGAGCTGGGCATAGTGGTGCATGCCTTA  1050
      ||| ||||||| |||||||||||||||| |||||||| ||||||||||||
seq2  ATA-GCAGCAA-GTCTCACCTTGGAGCT-GGCATAGT-GTGCATGCCTTA  1043

seq1  AATCCCAGTACTTGGGTGGTGAAGGGAGGTAGAT  1084
      ||| ||||||||||||||||||||||| ||||||
seq2  AAT-CCAGTACTTGGGTGGTGAAGGGAAGTAGAT  1076

seq1: chr3_84032538_84032983
seq2: B6Ng01-043M06.g_69_515 (reverse)

seq1  AACCAAACCAAACCAAACC-AAACCAAACCAAACCAAAAACGCCATCAGA  49
      |||| |||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACCCAACCAAACCAAACCAAAACCAAACCAAACCAAAAACGCCATCAGA  50

seq1  ACAATCTCAGCTTGCAGCCGCCCCAGGAACTTCCTGGTTCTGCATAGCCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTCAGCTTGCAGCCGCCCCAGGAACTTCCTGGTTCTGCATAGCCA  100

seq1  CGCCTCCCGTTACTATGGTAATGGGTCCCTCCCCCCTCCCCTCCGAAAGC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCCCGTTACTATGGTAATGGGTCCCTCCCCCCTCCCCTCCGAAAGC  150

seq1  CAACCTTGCTTCAGCTAAAACGTGTAGGCAAGCGTTCTCCTCCTTGATAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTGCTTCAGCTAAAACGTGTAGGCAAGCGTTCTCCTCCTTGATAC  200

seq1  TGATGGCTTTGCTTATAGAATTTCTTCCTTTCCCTCCCTCGGTAGGTCTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCTTTGCTTATAGAATTTCTTCCTTTCCCTCCCTCGGTAGGTCTC  250

seq1  GTTGGCTAACCTTATTCCTCACGGTATTAAAACCTTTTTGTTGTTGTTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTAACCTTATTCCTCACGGTATTAAAACCTTTTTGTTGTTGTTGT  300

seq1  TTTGTTTGTTTGTATTTTTGTTTTTGTTCTGTAGTTTTGTTTCGTTTTGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTGTATTTTTGTTTTTGTTCTGTAGTTTTGTTTCGTTTTGG  350

seq1  TAGTTTCATTAAAAAAAGCTTTTCAGAAAAAAAAAAAATTTAGATGTGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCATTAAAAAAAGCTTTTCAGAAAAAAAAAAAATTTAGATGTGCA  400

seq1  TTGGCCGGGAATCGAACCCGGGCCTCCCGCGTGGCAGGCGAGAATTC  446
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCGGGAATCGAACCCGGGCCTCCCGCGTGGCAGGCGAGAATTC  447