BAC Information

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BAC

Clone NameB6Ng01-044A20
Chromosome3 (Build37)
Map Location 75,623,126 - 75,693,579
singlet/doubletdoublet
Overlap geneGolph4
Upstream geneBC050789, Serpini2, Wdr49, Pdcd10, Serpini1
Downstream geneFstl5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044A20.bB6Ng01-044A20.g
ACCDH869920DH869921
length1,1421,145
definitionDH869920|Mus musculus domesticus DNA, BAC clone: B6Ng01-044A20, 5' end.DH869921|Mus musculus domesticus DNA, BAC clone: B6Ng01-044A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,623,126 - 75,624,268)(75,692,414 - 75,693,579)
sequence
gaattctcaacagaggaatctgaaatggccacggagctcttaaatgttca
gcatccttagcaaatcaaaaggatgctgaagatgtgattagaagaaagat
gtcttagaaagaggagttttttcagctctcctttagaaagtcaaaactta
aatctgcacagctctattcctagaatgcatgctttccttggctggtaaac
gtgtaatcatctttgctatctttgagaaatggaaagaaaatgttaatctc
aaatttgcaacctttgggaaactattctgtcatttgctagaaacacatag
ctcagcatgaactattcaagtgatagtatatattgcgcctgaattattag
acaattttgaacaaaatctagaaaagaaaatcatatcttgaaagataaag
cctagatttttaaaaactgaaaatgtttgagaacaatcagttagactgtg
atccttctgataatttcatctcttgctttgttactttagtcagttactgg
gcatcttaagtacaaatctttttactcttttttctttggttaagagttgt
cagacacttatcaccatgcttatttgatagagatgtataataacaagtaa
acatattggtttcagccagggtgatcatctatgcataatttgaagcaagt
aaaatcatatggtatataaataagacaggatcatgtttcttatataaata
gcacaaagatcgcatggacacttggtaaaatgtggtttcttgatttcctt
ttaaatctattcaccaggaaagtgatgtggtccaacaaccagatgttcat
tgttgaatccatacaatagagccatgtatgatgtcaaattattgagaaaa
accagcccttcaaaacagaatcacagatcttagatatttcatcataatac
atattaattatgttctgcctttcgtgaagactacagcattttaacttctc
aaaatgtacatgataattatataccttgaaatgttctgagctatagcatg
ttaattttatatattattagatggatgtctcagaattttaaattatcagt
tattcattttatatatgagcaaatgtcagaaaataaagggtatccaatta
gttacaaaaaatattttaacacctttttttaattccagaaga
gaattcaggtggaggctgattcctactagaatagcaaaggattggcaggt
taagcacagcactccagcattccagagcaggcatcccactcttccttcca
tggaagagagcaggcctctgtgcttaacagttaattctgggttctccaat
gattattctgggatggctttctacagtgggggtgtgtgaagaaatggatt
ggaggttgttctcaggattaaaaagaacactaactttggcatcttttaga
gtgattaagctttagcttagaagaacaaaattgagaaacgtcaaaaaaag
aaaaaatacagtgactcttaaagatgaagaggagagggaaagccaaccaa
gaagttggaaagtggatgggaaaagagacttcctgtttgctgagcatgtt
gtctgctctgttgggctgtcaagtgtgccctgtgactttgttccatgctt
tgtgaccaccttgataaccatgaacaaggatgtgtggctgcaggtttgaa
aaagaggtcatcaggtggcaagatggtatgcacaattcagagtgcactta
tgtagatgcttggatagtctttgtgttgactgaaaacaagacccctgcct
ttctggttggacagtctaggttcttagccctatacaggagaaatgcaaga
cattgtggagtggatccaatcttgtgttttgtatacatgatgtttacagt
ttattttagctcttctgtcatagactgctaataaatcaatacacattttg
ggatgacatccattccccaagttctgtataaattgatccggaaattcttc
tgattattggtcccaccttgtttcggggatggcttggagcatgttgatgc
tgacggttttctacttagctttcagtatgccttcttttttcccttctgca
atgactttaggaaaatatgcagcatatacctacctctgaactatttccaa
taatggaagtagagacatatgggagatgagagtagagagtcagagcagaa
aacctacaagtgtgtaggaggagattatgctgcaactggaacaggtggtc
tgataggcacttagttaggatatgctactggcttgcatatctactccctg
acactctttgctcatcctatccatgcctggaaagacctgggcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_75623126_75624268
seq2: B6Ng01-044A20.b_29_1170

seq1  GAATTCTCAACAGAGGAATCTGAAATGGCCACGGAGCTCTTAAATGTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAACAGAGGAATCTGAAATGGCCACGGAGCTCTTAAATGTTCA  50

seq1  GCATCCTTAGCAAATCAAAAGGATGCTGAAGATGTGATTAGAAGAAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTTAGCAAATCAAAAGGATGCTGAAGATGTGATTAGAAGAAAGAT  100

seq1  GTCTTAGAAAGAGGAGTTTTTTCAGCTCTCCTTTAGAAAGTCAAAACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGAAAGAGGAGTTTTTTCAGCTCTCCTTTAGAAAGTCAAAACTTA  150

seq1  AATCTGCACAGCTCTATTCCTAGAATGCATGCTTTCCTTGGCTGGTAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGCACAGCTCTATTCCTAGAATGCATGCTTTCCTTGGCTGGTAAAC  200

seq1  GTGTAATCATCTTTGCTATCTTTGAGAAATGGAAAGAAAATGTTAATCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATCATCTTTGCTATCTTTGAGAAATGGAAAGAAAATGTTAATCTC  250

seq1  AAATTTGCAACCTTTGGGAAACTATTCTGTCATTTGCTAGAAACACATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGCAACCTTTGGGAAACTATTCTGTCATTTGCTAGAAACACATAG  300

seq1  CTCAGCATGAACTATTCAAGTGATAGTATATATTGCGCCTGAATTATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCATGAACTATTCAAGTGATAGTATATATTGCGCCTGAATTATTAG  350

seq1  ACAATTTTGAACAAAATCTAGAAAAGAAAATCATATCTTGAAAGATAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTGAACAAAATCTAGAAAAGAAAATCATATCTTGAAAGATAAAG  400

seq1  CCTAGATTTTTAAAAACTGAAAATGTTTGAGAACAATCAGTTAGACTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGATTTTTAAAAACTGAAAATGTTTGAGAACAATCAGTTAGACTGTG  450

seq1  ATCCTTCTGATAATTTCATCTCTTGCTTTGTTACTTTAGTCAGTTACTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTGATAATTTCATCTCTTGCTTTGTTACTTTAGTCAGTTACTGG  500

seq1  GCATCTTAAGTACAAATCTTTTTACTCTTTTTTCTTTGGTTAAGAGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTAAGTACAAATCTTTTTACTCTTTTTTCTTTGGTTAAGAGTTGT  550

seq1  CAGACACTTATCACCATGCTTATTTGATAGAGATGTATAATAACAAGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTTATCACCATGCTTATTTGATAGAGATGTATAATAACAAGTAA  600

seq1  ACATATTGGTTTCAGCCAGGGTGATCATCTATGCATAATTTGAAGCAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGGTTTCAGCCAGGGTGATCATCTATGCATAATTTGAAGCAAGT  650

seq1  AAAATCATATGGTATATAAATAAGACAGGATCATGTTTCTTATATAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATATGGTATATAAATAAGACAGGATCATGTTTCTTATATAAATA  700

seq1  GCACAAAGATCGCATGGACACTTGGTAAAATGTGGTTTCTTGATTTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAAGATCGCATGGACACTTGGTAAAATGTGGTTTCTTGATTTCCTT  750

seq1  TTAAATCTATTCACCAGGAAAGTGATGTGGTCCAACAACCAGATGTTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCTATTCACCAGGAAAGTGATGTGGTCCAACAACCAGATGTTCAT  800

seq1  TGTTGAATCCATACAATAGAGCCATGTATGATGTCAAATTATTGAGAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAATCCATACAATAGAGCCATGTATGATGTCAAATTATTGAGAAAA  850

seq1  ACCAGCCCTTCAAAACAGAATCACAGATCTTAGATATTTCATCATAATAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCCTTCAAAACAGAATCACAGATCTTAGATATTTCATCATAATAC  900

seq1  ATATTAATTATGTTCTGCCTTTCGTGAAGACTACAGCAATTTTAACTTCT  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATATTAATTATGTTCTGCCTTTCGTGAAGACTACAGC-ATTTTAACTTCT  949

seq1  CAAAATGTACATGATAATTATATACCTTGAAATGTTCTGAGCTATAGCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATGTACATGATAATTATATACCTTGAAATGTTCTGAGCTATAGCAT  999

seq1  GTTAATTTTATATATTATTAAGATGGATGTCTCAGAATTTTAAATTATCA  1050
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTAATTTTATATATTATT-AGATGGATGTCTCAGAATTTTAAATTATCA  1048

seq1  GTTATTCATTTTATATATGAAGCAAATGTCAGAAAATAAA-GGTATCCAA  1099
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  GTTATTCATTTTATATATG-AGCAAATGTCAGAAAATAAAGGGTATCCAA  1097

seq1  ATAAGTACAAAAAATATTTATAACA-CTTTTTTTAATTCCA-AAGA  1143
       ||  |||||||||||||| ||||| ||||||||||||||| ||||
seq2  TTAGTTACAAAAAATATTT-TAACACCTTTTTTTAATTCCAGAAGA  1142

seq1: chr3_75692414_75693579
seq2: B6Ng01-044A20.g_64_1208 (reverse)

seq1  AAGGCCCCAGTCTTTTCCAGTGCATTGAATAGAATGAGCAAAAAGATGTC  50
      |||||||  ||| ||||||| ||| || |||| ||||||||| || ||||
seq2  AAGGCCCAGGTC-TTTCCAG-GCA-TGGATAGGATGAGCAAAGAG-TGTC  46

seq1  AGGGGAGTAAAGGATACTGCAAGCCAGGTAGCATATCCTAAACCTAAGTG  100
      | |||||||   |||| ||||||||| ||||||||||||||  |||||||
seq2  A-GGGAGTA---GATA-TGCAAGCCA-GTAGCATATCCTAA--CTAAGTG  88

seq1  CCTATCAGACCCACCCTGTTCCCAGTGGCAGCCTTAATCTCCTCTTACAC  150
      |||||||||||   |||||| ||||| |||| | |||||||||| |||||
seq2  CCTATCAGACC--ACCTGTT-CCAGTTGCAG-CATAATCTCCTCCTACAC  134

seq1  ACTTGTAGGTTTTTCTGCTCTGGCTCTCTTACTCTCATTCTCCCATATGT  200
      ||||||||| |||||||||||| ||||| |||||||| ||||||||||||
seq2  ACTTGTAGG-TTTTCTGCTCTGACTCTC-TACTCTCA-TCTCCCATATGT  181

seq1  CTCTACTTCCATTATTGGAAATAGTTCAGAGGTAGGTTATATGCTGCATA  250
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTCTACTTCCATTATTGGAAATAGTTCAGAGGTAGG-TATATGCTGCATA  230

seq1  TTTTCCTAAAAGTCATTGCAGAAGGGAAAAAAGAAGGCATACTGAAAGCT  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCT-AAAGTCATTGCAGAAGGGAAAAAAGAAGGCATACTGAAAGCT  279

seq1  AAGTAGAAAACCGTCAGCATCAACATGCTCCAAGCCATCCCCGAAACAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAAACCGTCAGCATCAACATGCTCCAAGCCATCCCCGAAACAAG  329

seq1  GTGGGACCAATAATCAGAAGAATTTCCGGATCAATTTATACAGAACTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACCAATAATCAGAAGAATTTCCGGATCAATTTATACAGAACTTGG  379

seq1  GGAATGGATGTCATCCCAAAATGTGTATTGATTTATTAGCAGTCTATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGATGTCATCCCAAAATGTGTATTGATTTATTAGCAGTCTATGAC  429

seq1  AGAAGAGCTAAAATAAACTGTAAACATCATGTATACAAAACACAAGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCTAAAATAAACTGTAAACATCATGTATACAAAACACAAGATTG  479

seq1  GATCCACTCCACAATGTCTTGCATTTCTCCTGTATAGGGCTAAGAACCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACTCCACAATGTCTTGCATTTCTCCTGTATAGGGCTAAGAACCTA  529

seq1  GACTGTCCAACCAGAAAGGCAGGGGTCTTGTTTTCAGTCAACACAAAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCCAACCAGAAAGGCAGGGGTCTTGTTTTCAGTCAACACAAAGAC  579

seq1  TATCCAAGCATCTACATAAGTGCACTCTGAATTGTGCATACCATCTTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAAGCATCTACATAAGTGCACTCTGAATTGTGCATACCATCTTGCC  629

seq1  ACCTGATGACCTCTTTTTCAAACCTGCAGCCACACATCCTTGTTCATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATGACCTCTTTTTCAAACCTGCAGCCACACATCCTTGTTCATGGT  679

seq1  TATCAAGGTGGTCACAAAGCATGGAACAAAGTCACAGGGCACACTTGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGGTGGTCACAAAGCATGGAACAAAGTCACAGGGCACACTTGACA  729

seq1  GCCCAACAGAGCAGACAACATGCTCAGCAAACAGGAAGTCTCTTTTCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAACAGAGCAGACAACATGCTCAGCAAACAGGAAGTCTCTTTTCCCA  779

seq1  TCCACTTTCCAACTTCTTGGTTGGCTTTCCCTCTCCTCTTCATCTTTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTTCCAACTTCTTGGTTGGCTTTCCCTCTCCTCTTCATCTTTAAG  829

seq1  AGTCACTGTATTTTTTCTTTTTTTGACGTTTCTCAATTTTGTTCTTCTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACTGTATTTTTTCTTTTTTTGACGTTTCTCAATTTTGTTCTTCTAA  879

seq1  GCTAAAGCTTAATCACTCTAAAAGATGCCAAAGTTAGTGTTCTTTTTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAGCTTAATCACTCTAAAAGATGCCAAAGTTAGTGTTCTTTTTAAT  929

seq1  CCTGAGAACAACCTCCAATCCATTTCTTCACACACCCCCACTGTAGAAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGAACAACCTCCAATCCATTTCTTCACACACCCCCACTGTAGAAAG  979

seq1  CCATCCCAGAATAATCATTGGAGAACCCAGAATTAACTGTTAAGCACAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCCAGAATAATCATTGGAGAACCCAGAATTAACTGTTAAGCACAGA  1029

seq1  GGCCTGCTCTCTTCCATGGAAGGAAGAGTGGGATGCCTGCTCTGGAATGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCTCTCTTCCATGGAAGGAAGAGTGGGATGCCTGCTCTGGAATGC  1079

seq1  TGGAGTGCTGTGCTTAACCTGCCAATCCTTTGCTATTCTAGTAGGAATCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGCTGTGCTTAACCTGCCAATCCTTTGCTATTCTAGTAGGAATCA  1129

seq1  GCCTCCACCTGAATTC  1166
      ||||||||||||||||
seq2  GCCTCCACCTGAATTC  1145