BAC Information

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BAC

Clone NameB6Ng01-044B07
Chromosome3 (Build37)
Map Location 19,998,093 - 20,131,116
singlet/doubletdoublet
Overlap geneHltf, Gyg, Cpa3, EG664965
Upstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3
Downstream geneLOC100040283, Cpb1, Agtr1b, EG665094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044B07.bB6Ng01-044B07.g
ACCDH869940DH869941
length1,1461,022
definitionDH869940|Mus musculus domesticus DNA, BAC clone: B6Ng01-044B07, 5' end.DH869941|Mus musculus domesticus DNA, BAC clone: B6Ng01-044B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,998,093 - 19,999,260)(20,130,085 - 20,131,116)
sequence
gaattctttaaaggacttgtggtctcttctgtccttcttaaaacttaagc
catttattgatagagagtggtggtataggatcatacagcgtcctgtcact
acaggagatgagggaggacttaggtaagtaagtttatgaggtgatccatt
agtgacgattaatggaacctaatttcacggtctttactgttttcacttag
cgttagtctccaaagcataagcttccgtgtcactgactctgaaaacctag
tgacttgtgttcggggatccaagctttttgtttgtgcatcttttctgtat
tttgcaaaaattaaaggaaaggcagagctttatggtcactgtgtgtagct
gttacccctaaagtaacaggttccacaatgatatgaaaagctatatcctt
tgatgattcactatgcactatattttgataacgtatataacttttataga
ggcatttgatatggtgtagagtacacagtggacagtgatctcaaaaggtt
taatgaacatttcacgtggttgattttggtgggcacagataaatggtgac
aaaaggattgaaaacattgattttgccacacacttgggtgctgtagtttt
agagcagtgattgtctaaataggtttgggaccctaagtgggccatacggt
cattatagaagtatcagcatggaaaaggaaacagaaacgtaatggagatg
gaaaaaaagtaccagcgtatgttctcctgtgaggatgcatatgtatatat
actgagatacttacttctcttatggctagatacagtaaatgagcttccca
ttgtgagttcaagtggacatgatttaaagtataagccattattcttagta
gtcaaaactggtcacatgattcctaagaaatatttttgccctattttgtc
tatgttaaaaattgtttagtttattattattggcataataactgataagc
atcatttaaaaaaaattgacattgagggaaaaagtggaaagattacagaa
ccaagaaaggcatttttttcctctctgagtttgcatgatttacttttcag
tatcatacttattggattcaattataacgttacttcccataaatacatgg
gaacttaaaatatttatgtattacatccaatgctgctcctttctga
gaattcaacatcatgcttactgtgagaggtttctctattaagaggagaat
ttaagagaaggaggaagaagaagaagaagaagaagaagaagaagaagaag
aagaagaagaagaagaagaagaagaaagaccctcttccagttctattatt
tttctgttttaattacccaacacaataaagcaaaatagcaatgggaaagt
tagaaaaaaaaaaaaagaaaatgcagttactcaacaagaaagtaagtgca
tttggatatatatctgattatataattaatatttaaaaataaaataccaa
taaaaactaaagtcattaaggtgagtaatacatagatgtaaccaaaacaa
atatatttcatatgaataataaccaatttaaaattttactagagaaaatg
acacataatatatgaaatggtaatcaagatatataaagttctgctgaagt
atcaaaacagcttagtctgatttcagcaaaattctcctcaaacttatcca
taatttaatatcgagatttctaacaagaaaccacttttctgataattttg
tattctaaaactactctaacaaaatatttttgaaaataagaacaaggagg
tactatacccacagcattaaattttatcatatgtaagtacagttttccta
ctacatgagtttaaaaataagtttgtgaacttgggtagtaaatcaacaaa
caaacaaaaaaatgcattcaaatattcatgtgcatattgaaaactgcaca
tttgaaacgaagctgaagcattttttattttaattcccaactccaaatac
aaagacattttagctacagggctagcaatgtggataggtaggtgaaagag
ttccctgatcactctgactatctgagtttcatcccggaagtccaaatggg
aagagaaactgaccccctgttgttgccttgacctacacgggcacacaaat
aatgtaaaaggttataaatataaatatataatctacctaaataatattcc
tccttagttagtggtatagtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_19998093_19999260
seq2: B6Ng01-044B07.b_45_1190

seq1  GAATTCTTTAAAGGACTTGTGGTCTCTTCTGTCCTTCTTAAAACTTAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAGGACTTGTGGTCTCTTCTGTCCTTCTTAAAACTTAAGC  50

seq1  CATTTATTGATAGAGAGTGGTGGTATAGGATCATACAGCGTCCTGTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATTGATAGAGAGTGGTGGTATAGGATCATACAGCGTCCTGTCACT  100

seq1  ACAGGAGATGAGGGAGGACTTAGGTAAGTAAGTTTATGAGGTGATCCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGATGAGGGAGGACTTAGGTAAGTAAGTTTATGAGGTGATCCATT  150

seq1  AGTGACGATTAATGGAACCTAATTTCACGGTCTTTACTGTTTTCACTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACGATTAATGGAACCTAATTTCACGGTCTTTACTGTTTTCACTTAG  200

seq1  CGTTAGTCTCCAAAGCATAAGCTTCCGTGTCACTGACTCTGAAAACCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAGTCTCCAAAGCATAAGCTTCCGTGTCACTGACTCTGAAAACCTAG  250

seq1  TGACTTGTGTTCGGGGATCCAAGCTTTTTGTTTGTGCATCTTTTCTGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGTGTTCGGGGATCCAAGCTTTTTGTTTGTGCATCTTTTCTGTAT  300

seq1  TTTGCAAAAATTAAAGGAAAGGCAGAGCTTTATGGTCACTGTGTGTAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAAAAATTAAAGGAAAGGCAGAGCTTTATGGTCACTGTGTGTAGCT  350

seq1  GTTACCCCTAAAGTAACAGGTTCCACAATGATATGAAAAGCTATATCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCCCTAAAGTAACAGGTTCCACAATGATATGAAAAGCTATATCCTT  400

seq1  TGATGATTCACTATGCACTATATTTTGATAACGTATATAACTTTTATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGATTCACTATGCACTATATTTTGATAACGTATATAACTTTTATAGA  450

seq1  GGCATTTGATATGGTGTAGAGTACACAGTGGACAGTGATCTCAAAAGGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTGATATGGTGTAGAGTACACAGTGGACAGTGATCTCAAAAGGTT  500

seq1  TAATGAACATTTCACGTGGTTGATTTTGGTGGGCACAGATAAATGGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAACATTTCACGTGGTTGATTTTGGTGGGCACAGATAAATGGTGAC  550

seq1  AAAAGGATTGAAAACATTGATTTTGCCACACACTTGGGTGCTGTAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGATTGAAAACATTGATTTTGCCACACACTTGGGTGCTGTAGTTTT  600

seq1  AGAGCAGTGATTGTCTAAATAGGTTTGGGACCCTAAGTGGGCCATACGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTGATTGTCTAAATAGGTTTGGGACCCTAAGTGGGCCATACGGT  650

seq1  CATTATAGAAGTATCAGCATGGAAAAGGAAACAGAAACGTAATGGAGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAGAAGTATCAGCATGGAAAAGGAAACAGAAACGTAATGGAGATG  700

seq1  GAAAAAAAGTACCAGCGTATGTTCTCCTGTGAGGATGCATATGTATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAGTACCAGCGTATGTTCTCCTGTGAGGATGCATATGTATATAT  750

seq1  ACTGAGATACTTACTTCTCTTATGGCTAGATACAGTAAATGAGCTTCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGATACTTACTTCTCTTATGGCTAGATACAGTAAATGAGCTTCCCA  800

seq1  TTGTGAGTTCAAGTGGACATGATTTAAAGTATAAGCCATTATTCTTAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGTTCAAGTGGACATGATTTAAAGTATAAGCCATTATTCTTAGTA  850

seq1  GTCAAAACTGGTCACATGATTCCTAAGAAATATTTTTGCCCTATTTTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAACTGGTCACATGATTCCTAAGAAATATTTTTGCCCTATTTTGTC  900

seq1  TATGTTAAAAATTGTTTAGTTTATTATTATTGGCAATAATAACTGATAAG  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TATGTTAAAAATTGTTTAGTTTATTATTATTGGC-ATAATAACTGATAAG  949

seq1  CATCATTTAAAAAAAATTGACATTGAGGGAAAAAAGTGGAAAGATTACAG  1000
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CATCATTTAAAAAAAATTGACATTGAGGG-AAAAAGTGGAAAGATTACAG  998

seq1  AACCAAGAAAGGCATTTTTTTCCTCTTCTGAGTTTGCATGATTTACTTTT  1050
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACCAAGAAAGGCATTTTTTTCCTC-TCTGAGTTTGCATGATTTACTTTT  1047

seq1  CAGTTATTCATTAACTTATTTGATTTTCATATTATACCTTTACTTTTCAC  1100
      ||||   ||||  ||||||| ||  |||| |||||| | ||||||  || 
seq2  CAGT--ATCAT--ACTTATTGGA--TTCA-ATTATAACGTTACTTCCCAT  1090

seq1  ATTACATTACATGGGACTTTAAAAAATTTATTTATGTATTTACATCTCAA  1150
      |    | |||||||||  ||||||    |||||||||| |||||  || |
seq2  A----AATACATGGGAACTTAAAA----TATTTATGTA-TTACA--TCCA  1129

seq1  ATGCTGCCTCCTTCCTGA  1168
      |||||| |||||| ||||
seq2  ATGCTG-CTCCTTTCTGA  1146

seq1: chr3_20130085_20131116
seq2: B6Ng01-044B07.g_70_1091 (reverse)

seq1  ATACTATTACCACTTAACTAAGGAGGAAATTATTATTTAGGTAGATTATA  50
      |||||| |||||| ||||||||||||||  ||||||||||||||||||||
seq2  ATACTA-TACCAC-TAACTAAGGAGGAA--TATTATTTAGGTAGATTATA  46

seq1  TATTTATAATTTATAACTTTTTAACATTTATTTGTTGTGCCCGTGTAGGT  100
      ||||||| ||||||||| |||| ||| ||||||| |||||||||||||||
seq2  TATTTAT-ATTTATAACCTTTT-ACA-TTATTTG-TGTGCCCGTGTAGGT  92

seq1  CAAAGGCAACATACAGGGGGTCAGTTTTCTCCTTCCATTTGGACTTCCGG  150
      | ||||||||| |||||||||||| |||||| | ||||||||||||||||
seq2  C-AAGGCAACA-ACAGGGGGTCAG-TTTCTCTTCCCATTTGGACTTCCGG  139

seq1  GATGAAACTCAGATAGTCAGAGTGATCAGGGAACTCTTTCACCTACCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAACTCAGATAGTCAGAGTGATCAGGGAACTCTTTCACCTACCTAT  189

seq1  CCACATTGCTAGCCCTGTAGCTAAAATGTCTTTGTATTTGGAGTTGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTGCTAGCCCTGTAGCTAAAATGTCTTTGTATTTGGAGTTGGGAA  239

seq1  TTAAAATAAAAAATGCTTCAGCTTCGTTTCAAATGTGCAGTTTTCAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATAAAAAATGCTTCAGCTTCGTTTCAAATGTGCAGTTTTCAATAT  289

seq1  GCACATGAATATTTGAATGCATTTTTTTGTTTGTTTGTTGATTTACTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGAATATTTGAATGCATTTTTTTGTTTGTTTGTTGATTTACTACC  339

seq1  CAAGTTCACAAACTTATTTTTAAACTCATGTAGTAGG-AAACTGTACTTA  399
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAAGTTCACAAACTTATTTTTAAACTCATGTAGTAGGAAAACTGTACTTA  389

seq1  CATATGATAAAATTTAATGCTGTGGGTATAGTACCTCCTTGTTCTTATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGATAAAATTTAATGCTGTGGGTATAGTACCTCCTTGTTCTTATTT  439

seq1  TCAAAAATATTTTGTTAGAGTAGTTTTAGAATACAAAATTATCAGAAAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAATATTTTGTTAGAGTAGTTTTAGAATACAAAATTATCAGAAAAG  489

seq1  TGGTTTCTTGTTAGAAATCTCGATATTAAATTATGGATAAGTTTGAGGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTTGTTAGAAATCTCGATATTAAATTATGGATAAGTTTGAGGAG  539

seq1  AATTTTGCTGAAATCAGACTAAGCTGTTTTGATACTTCAGCAGAACTTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGCTGAAATCAGACTAAGCTGTTTTGATACTTCAGCAGAACTTTA  589

seq1  TATATCTTGATTACCATTTCATATATTATGTGTCATTTTCTCTAGTAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCTTGATTACCATTTCATATATTATGTGTCATTTTCTCTAGTAAAA  639

seq1  TTTTAAATTGGTTATTATTCATATGAAATATATTTGTTTTGGTTACATCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTGGTTATTATTCATATGAAATATATTTGTTTTGGTTACATCT  689

seq1  ATGTATTACTCACCTTAATGACTTTAGTTTTTATTGGTATTTTATTTTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTACTCACCTTAATGACTTTAGTTTTTATTGGTATTTTATTTTTA  739

seq1  AATATTAATTATATAATCAGATATATATCCAAATGCACTTACTTTCTTGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTAATTATATAATCAGATATATATCCAAATGCACTTACTTTCTTGT  789

seq1  TGAGTAACTGCATTTTCTTTTTTTTTTTTTCTAACTTTCCCATTGCTATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAACTGCATTTTCTTTTTTTTTTTTTCTAACTTTCCCATTGCTATT  839

seq1  TTGCTTTATTGTGTTGGGTAATTAAAACAGAAAAATAATAGAACTGGAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTATTGTGTTGGGTAATTAAAACAGAAAAATAATAGAACTGGAAG  889

seq1  AGGGTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  939

seq1  TCTTCTTCTTCTTCTTCTTCCTCCTTCTCTTAAATTCTCCTCTTAATAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTCTTCTTCTTCTTCCTCCTTCTCTTAAATTCTCCTCTTAATAGA  989

seq1  GAAACCTCTCACAGTAAGCATGATGTTGAATTC  1032
      |||||||||||||||||||||||||||||||||
seq2  GAAACCTCTCACAGTAAGCATGATGTTGAATTC  1022