BAC Information

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BAC

Clone NameB6Ng01-044C24
Chromosome3 (Build37)
Map Location 51,089,836 - 51,241,339
singlet/doubletdoublet
Overlap geneElf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1
Upstream geneLOC639469, Slc7a11, EG621304, LOC100039667, Ccrn4l
Downstream geneRab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044C24.bB6Ng01-044C24.g
ACCDH870014DH870015
length8161,157
definitionDH870014|Mus musculus domesticus DNA, BAC clone: B6Ng01-044C24, 5' end.DH870015|Mus musculus domesticus DNA, BAC clone: B6Ng01-044C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,089,836 - 51,090,651)(51,240,148 - 51,241,339)
sequence
gaattcactgtatttttagatggacttcacctgccagtctttacttggaa
taaatgaagctatgatcatggaagagtgtcactaaatttttatgtttctt
tcgattacaccttgaatgttttattgcggggagagacaggcacatgccac
cacacatgtgtggaggtcagagaacaactgaggggactcagccccctcct
cgagtctgagggtttcagggaatgaacacaggatatcagacttgacagca
tgtgcttttacccactgacatctcacagccctgattacacttcccagcag
gtattctcttatctgtcaatacttcatacatatatacactgcattctaat
tacacgtccttcccactcctattaagccgcctcctccttagaaatgcctt
tcccacattaatgatgttttattttgtgaaccactgaatttatccagggc
catctgtgtgatcctggggttggaactttccattggaagacggtgggctc
accgatagggtcacaactaaaagcaaagactcgcccctcctagaacgttt
cagcatccagcagtgcagcagggaagggtagagagccatcccccatccac
agctgcctggtgacaggtctagtcctgtagagttcctcgggcaggtaact
gatcttcttgagttcaagacagagccgctgtgtcaggcccacggtggcaa
tttgcacacagcccttctccttattttccagctcttgcgttcttcccact
tctcattccgaggtgttttctgagccttggaggtggtgatggaaatgtcc
tgtttagggctgaaca
gaattcaaactcagattctcacgatggctttagcaagtactttacgctct
gctatccatatatcccctacatttcgaattttccgaaatgtcttattgag
tctttaggattactctaaagacacagttaaagatgtcagaagctcaccat
ttctaatcaccagtttaaaagtgttgtgagaagtagtaacttttcagaaa
agaaaaatacttctaactttataatgcatattcctatgagagttaaaata
ggttccttgtgatttatttgcctaacttctttgtatttgtctaattttta
acatctatttttagaactctagaaaagaataaagatgtgtatggactgag
atgtgcacatagccttgcacttagaaggtagcagaggaccatgggttaaa
aactggcaagaacttctgttcttacaaacaaagtgttatctcaggtgtta
tctgtttaaaaatatctccagtaaatttgtgatgcttctattcaacttaa
tttcagtcatgttaaaatacagggaaggggtacatttcagaaaagagaga
aaaacttactctaagttcatagcataaataaggtatgacattctctgcta
atgaaactactatgattaaattagaagttcattaccagtatgcacacttt
acaaaatggaatataaaagaacctactattcagatatcaactaaagatag
gttttcaataaggaaaaggaggtcaacttacgtattctttactatcactg
cttccatcttagacctgcagcatatgtaaaatctcaagcatgggcaaaca
gaacacatgcagaaagggaatgatgaaaacttgctagtgaacatcctaaa
gtaaattttcttattaacactttaatatcagcctgaatgggttcttctgc
ctctctagagagctaatacagaaaaaaagaaaccaaaacttaaattgaat
gtgctatcattttcttgtattaactaaacgtcactatagtttatctccca
tagcattaaatgtcactctgaaactatgacgagtaaacagagagcagaat
ggagttcaagaagcatgtactaaatggtgtacagggtttgtctactcatg
ctctgcaattgggatggaggattggttacagaactcaatcattctatact
gttatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_51089836_51090651
seq2: B6Ng01-044C24.b_44_859

seq1  GAATTCACTGTATTTTTAGATGGACTTCACCTGCCAGTCTTTACTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTATTTTTAGATGGACTTCACCTGCCAGTCTTTACTTGGAA  50

seq1  TAAATGAAGCTATGATCATGGAAGAGTGTCACTAAATTTTTATGTTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAGCTATGATCATGGAAGAGTGTCACTAAATTTTTATGTTTCTT  100

seq1  TCGATTACACCTTGAATGTTTTATTGCGGGGAGAGACAGGCACATGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATTACACCTTGAATGTTTTATTGCGGGGAGAGACAGGCACATGCCAC  150

seq1  CACACATGTGTGGAGGTCAGAGAACAACTGAGGGGACTCAGCCCCCTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGTGTGGAGGTCAGAGAACAACTGAGGGGACTCAGCCCCCTCCT  200

seq1  CGAGTCTGAGGGTTTCAGGGAATGAACACAGGATATCAGACTTGACAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCTGAGGGTTTCAGGGAATGAACACAGGATATCAGACTTGACAGCA  250

seq1  TGTGCTTTTACCCACTGACATCTCACAGCCCTGATTACACTTCCCAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTTTACCCACTGACATCTCACAGCCCTGATTACACTTCCCAGCAG  300

seq1  GTATTCTCTTATCTGTCAATACTTCATACATATATACACTGCATTCTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTCTTATCTGTCAATACTTCATACATATATACACTGCATTCTAAT  350

seq1  TACACGTCCTTCCCACTCCTATTAAGCCGCCTCCTCCTTAGAAATGCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGTCCTTCCCACTCCTATTAAGCCGCCTCCTCCTTAGAAATGCCTT  400

seq1  TCCCACATTAATGATGTTTTATTTTGTGAACCACTGAATTTATCCAGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATTAATGATGTTTTATTTTGTGAACCACTGAATTTATCCAGGGC  450

seq1  CATCTGTGTGATCCTGGGGTTGGAACTTTCCATTGGAAGACGGTGGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGTGTGATCCTGGGGTTGGAACTTTCCATTGGAAGACGGTGGGCTC  500

seq1  ACCGATAGGGTCACAACTAAAAGCAAAGACTCGCCCCTCCTAGAACGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATAGGGTCACAACTAAAAGCAAAGACTCGCCCCTCCTAGAACGTTT  550

seq1  CAGCATCCAGCAGTGCAGCAGGGAAGGGTAGAGAGCCATCCCCCATCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCAGCAGTGCAGCAGGGAAGGGTAGAGAGCCATCCCCCATCCAC  600

seq1  AGCTGCCTGGTGACAGGTCTAGTCCTGTAGAGTTCCTCGGGCAGGTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCTGGTGACAGGTCTAGTCCTGTAGAGTTCCTCGGGCAGGTAACT  650

seq1  GATCTTCTTGAGTTCAAGACAGAGCCGCTGTGTCAGGCCCACGGTGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTCTTGAGTTCAAGACAGAGCCGCTGTGTCAGGCCCACGGTGGCAA  700

seq1  TTTGCACACAGCCCTTCTCCTTATTTTCCAGCTCTTGCGTTCTTCCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCACACAGCCCTTCTCCTTATTTTCCAGCTCTTGCGTTCTTCCCACT  750

seq1  TCTCATTCCGAGGTGTTTTCTGAGCCTTGGAGGTGGTGATGGAAATGTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTCCGAGGTGTTTTCTGAGCCTTGGAGGTGGTGATGGAAATGTCC  800

seq1  TGTTTAGGGCTGAACA  816
      ||||||||||||||||
seq2  TGTTTAGGGCTGAACA  816

seq1: chr3_51240148_51241339
seq2: B6Ng01-044C24.g_63_1219 (reverse)

seq1  ACATAAACAGTATAGAAATGGATTGAAGTTCTGTAAACAAATCCTTTCCA  50
      |||| ||||||||||||   ||||| |||||||| ||| ||||||   | 
seq2  ACAT-AACAGTATAGAA--TGATTG-AGTTCTGT-AACCAATCCT---CC  42

seq1  ATCCCAAATTTGCAGAGCATGGAGGTAAGAACAAACACTGTACACATTTA  100
      |||||||  ||||||||||||   |||   |||||| ||||||||  || 
seq2  ATCCCAA--TTGCAGAGCATG--AGTA--GACAAACCCTGTACACCATTT  86

seq1  AGTACATGGCTTTCCTGGAACTCCATCTGGCTTCTCTTGTTTTACTCTGT  150
      ||||||| ||||  || |||||||||    || ||||   ||||||| ||
seq2  AGTACAT-GCTT--CTTGAACTCCAT---TCTGCTCTCTGTTTACTC-GT  129

seq1  CATTAGTTTCCAGAGTGAACATTTAATGCCTATGGGGAGATAAAACTTAA  200
      || |||||| ||||||| |||||||||| |||| ||||||| |||||  |
seq2  CA-TAGTTT-CAGAGTG-ACATTTAATG-CTAT-GGGAGAT-AAACT--A  171

seq1  TAGTGACGTTTTAGTTAAATACCAAGAAAATGATAGCACATTCAATTTAA  250
      |||||||| ||||||| |||| ||||||||||||||||||||||||||||
seq2  TAGTGACG-TTTAGTT-AATA-CAAGAAAATGATAGCACATTCAATTTAA  218

seq1  GTTTTGGTTTCTTTTTTTCTGTATTAGCTCTTCTAGAGAGGCAGAAGAAC  300
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GTTTTGGTTTCTTTTTTTCTGTATTAGCTC-TCTAGAGAGGCAGAAGAAC  267

seq1  CCATTCAGGCCTGATATTAAAGTGTTAATAAGAAAATTTTACTTTAGGAT  350
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  CCATTCAGG-CTGATATTAAAGTGTTAATAAGAAAA-TTTACTTTAGGAT  315

seq1  GTTCACTAGCAAGTTTTCATCATTCCCTTTCTGCATGTGTTCTGTTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACTAGCAAGTTTTCATCATTCCCTTTCTGCATGTGTTCTGTTTGCC  365

seq1  CATGCTTGAGATTTTACATATGCTGCAGGTCTAAGATGGAAGCAGTGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGAGATTTTACATATGCTGCAGGTCTAAGATGGAAGCAGTGATA  415

seq1  GTAAAGAATACCTAAGTTGACCTCCTTTTCCTTATTGAAAACCTATCTTT  500
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAATACGTAAGTTGACCTCCTTTTCCTTATTGAAAACCTATCTTT  465

seq1  AGTTGATATCTGAATAGTAGGTTCTTTTATATTCCATTTTGTAAAGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATATCTGAATAGTAGGTTCTTTTATATTCCATTTTGTAAAGTGTG  515

seq1  CATACTGGTAATGAACTTCTAATTTAATCATAGTAGTTTCATTAGCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTGGTAATGAACTTCTAATTTAATCATAGTAGTTTCATTAGCAGAG  565

seq1  AATGTCATACCTTATTTATGCTATGAACTTAGAGTAAGTTTTTCTCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCATACCTTATTTATGCTATGAACTTAGAGTAAGTTTTTCTCTCTT  615

seq1  TTCTGAAATGTACCCCTTCCCTGTATTTTAACATGACTGAAATTAAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAATGTACCCCTTCCCTGTATTTTAACATGACTGAAATTAAGTTG  665

seq1  AATAGAAGCATCACAAATTTACTGGAGATATTTTTAAACAGATAACACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAGCATCACAAATTTACTGGAGATATTTTTAAACAGATAACACCT  715

seq1  GAGATAACACTTTGTTTGTAAGAACAGAAGTTCTTGCCAGTTTTTAACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAACACTTTGTTTGTAAGAACAGAAGTTCTTGCCAGTTTTTAACCC  765

seq1  ATGGTCCTCTGCTACCTTCTAAGTGCAAGGCTATGTGCACATCTCAGTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCTCTGCTACCTTCTAAGTGCAAGGCTATGTGCACATCTCAGTCC  815

seq1  ATACACATCTTTATTCTTTTCTAGAGTTCTAAAAATAGATGTTAAAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATCTTTATTCTTTTCTAGAGTTCTAAAAATAGATGTTAAAAATT  865

seq1  AGACAAATACAAAGAAGTTAGGCAAATAAATCACAAGGAACCTATTTTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATACAAAGAAGTTAGGCAAATAAATCACAAGGAACCTATTTTAA  915

seq1  CTCTCATAGGAATATGCATTATAAAGTTAGAAGTATTTTTCTTTTCTGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATAGGAATATGCATTATAAAGTTAGAAGTATTTTTCTTTTCTGAA  965

seq1  AAGTTACTACTTCTCACAACACTTTTAAACTGGTGATTAGAAATGGTGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTACTACTTCTCACAACACTTTTAAACTGGTGATTAGAAATGGTGAG  1015

seq1  CTTCTGACATCTTTAACTGTGTCTTTAGAGTAATCCTAAAGACTCAATAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGACATCTTTAACTGTGTCTTTAGAGTAATCCTAAAGACTCAATAA  1065

seq1  GACATTTCGGAAAATTCGAAATGTAGGGGATATATGGATAGCAGAGCGTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTCGGAAAATTCGAAATGTAGGGGATATATGGATAGCAGAGCGTA  1115

seq1  AAGTACTTGCTAAAGCCATCGTGAGAATCTGAGTTTGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTGCTAAAGCCATCGTGAGAATCTGAGTTTGAATTC  1157