BAC Information

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BAC

Clone NameB6Ng01-044E08
Chromosome3 (Build37)
Map Location 81,526,932 - 81,689,591
singlet/doubletdoublet
Overlap genenone
Upstream geneGria2, Glrb, EG626841, Pdgfc, LOC229443
Downstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r, LOC100041940, EG633285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044E08.bB6Ng01-044E08.g
ACCDH870074DH870075
length1,076530
definitionDH870074|Mus musculus domesticus DNA, BAC clone: B6Ng01-044E08, 5' end.DH870075|Mus musculus domesticus DNA, BAC clone: B6Ng01-044E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,526,932 - 81,528,011)(81,689,057 - 81,689,591)
sequence
gaattcaaaggaaggtttgagtgttttaagacctttgcctaaaacttaaa
ggcacacagatttaatgcctgcattccattttgcaaactctaaagtgcag
gatagtgacagtagcccaagatatcagaatgcttgagataagacataaaa
agagtcacttgtaacccaatctgttatgtcaagaatccatgagcttccca
tttaccaagtgggaagtgactgaacctttaggaaaaagagcctgcctggt
aggaggtctttaaatcttcacatgggtctctccaaagaatgatgggcttc
tggcctgttcagtcatttacttgcttcaagcttcatgagctaaacaagtc
acttgcatcagtacgtccagccctcaccagaatccaaacacatggggctg
ccccatttaagcaaggtgcctgcagaggttaactagaacttctaattgtt
tttattccttgtgtgtgtgtgcatgtgtgtgtttgtgtgtgtgtgcactt
gtgtgtgtgtgtcatataaaaattatttattttcacttttattccatttc
ttaattacaacggagaataataaataggtttgctgcggtattttcatatg
gaattttattttgcactttgcaaactggttatatggtttccataacagcc
atgatgtttttggcttttatcaataccttgaagctatattttctctatat
tcttgtcataaggtttccatttcttcactacacattctaataaacaatgt
gatattttagatcatcatagttttaacttaaagtttctaagaattgtgat
gactattctttttttcttttggggggatttttctttatttacatttaaaa
tgttaacccctttccaggtctcccctctagaaacctcctatcccatcccc
ttctccctgcctctatgaggatgttcccccactgtgatggtttgtatgtt
cttggaccagggagtgccaccatttggaggattggccttcttggaattag
tggtgacttgttggagtagtgtgtcctgttggtgtgggcatagatcctca
ccctagttgcctggaattcagccttc
atgaatctgactgataagagagaactcagtcctcatttcatgtaaaggta
ttactattgtccagtaaaacatctagtcttactcagctgagtgaggtcac
aggagcaggttattgctagacctttttatatctagcctgtctctgctgat
tttaatagagccaaacttgctggggcacagtgccagtgtttgacagccag
tggttctaggcaatgtagtgtggatgctaaacaagtctacacagcaaaga
taaacaccttggaagagtgggtcccagcttcaggctggactgaccaaaca
tggacacagataaggagaatggtaccacggatgacacaacatctgggagg
gggtgtgtcttggggggaacttgcaaggaagcaccatctgggtgtttgtg
tgtgtgtggtggggtgagagccagcaatctcaggtatctaaagatgactc
ctagttagagatgatgctatcacactctctttgaaaaagttcaaaaagca
tctgggaattgtatgatgagcttttcgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81526932_81528011
seq2: B6Ng01-044E08.b_45_1120

seq1  GAATTCAAAGGAAGGTTTGAGTGTTTTAAGACCTTTGCCTAAAACTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGAAGGTTTGAGTGTTTTAAGACCTTTGCCTAAAACTTAAA  50

seq1  GGCACACAGATTTAATGCCTGCATTCCATTTTGCAAACTCTAAAGTGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACAGATTTAATGCCTGCATTCCATTTTGCAAACTCTAAAGTGCAG  100

seq1  GATAGTGACAGTAGCCCAAGATATCAGAATGCTTGAGATAAGACATAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTGACAGTAGCCCAAGATATCAGAATGCTTGAGATAAGACATAAAA  150

seq1  AGAGTCACTTGTAACCCAATCTGTTATGTCAAGAATCCATGAGCTTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCACTTGTAACCCAATCTGTTATGTCAAGAATCCATGAGCTTCCCA  200

seq1  TTTACCAAGTGGGAAGTGACTGAACCTTTAGGAAAAAGAGCCTGCCTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAAGTGGGAAGTGACTGAACCTTTAGGAAAAAGAGCCTGCCTGGT  250

seq1  AGGAGGTCTTTAAATCTTCACATGGGTCTCTCCAAAGAATGATGGGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTCTTTAAATCTTCACATGGGTCTCTCCAAAGAATGATGGGCTTC  300

seq1  TGGCCTGTTCAGTCATTTACTTGCTTCAAGCTTCATGAGCTAAACAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGTTCAGTCATTTACTTGCTTCAAGCTTCATGAGCTAAACAAGTC  350

seq1  ACTTGCATCAGTACGTCCAGCCCTCACCAGAATCCAAACACATGGGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCATCAGTACGTCCAGCCCTCACCAGAATCCAAACACATGGGGCTG  400

seq1  CCCCATTTAAGCAAGGTGCCTGCAGAGGTTAACTAGAACTTCTAATTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTAAGCAAGGTGCCTGCAGAGGTTAACTAGAACTTCTAATTGTT  450

seq1  TTTATTCCTTGTGTGTGTGTGCATGTGTGTGTTTGTGTGTGTGTGCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCTTGTGTGTGTGTGCATGTGTGTGTTTGTGTGTGTGTGCACTT  500

seq1  GTGTGTGTGTGTCATATAAAAATTATTTATTTTCACTTTTATTCCATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTCATATAAAAATTATTTATTTTCACTTTTATTCCATTTC  550

seq1  TTAATTACAACGGAGAATAATAAATAGGTTTGCTGCGGTATTTTCATATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTACAACGGAGAATAATAAATAGGTTTGCTGCGGTATTTTCATATG  600

seq1  GAATTTTATTTTGCACTTTGCAAACTGGTTATATGGTTTCCATAACAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTATTTTGCACTTTGCAAACTGGTTATATGGTTTCCATAACAGCC  650

seq1  ATGATGTTTTTGGCTTTTATCAATACCTTGAAGCTATATTTTCTCTATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGTTTTTGGCTTTTATCAATACCTTGAAGCTATATTTTCTCTATAT  700

seq1  TCTTGTCATAAGGTTTCCATTTCTTCACTACACATTCTAATAAACAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCATAAGGTTTCCATTTCTTCACTACACATTCTAATAAACAATGT  750

seq1  GATATTTTAGATCATCATAGTTTTAACTTAAAGTTTTCTAAGAATTGTGA  800
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GATATTTTAGATCATCATAGTTTTAACTTAAAG-TTTCTAAGAATTGTGA  799

seq1  TGACTATTCTTTTTTTCTTTTGGGGGGATTTTTCTTTATTTACATTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTATTCTTTTTTTCTTTTGGGGGGATTTTTCTTTATTTACATTTAAA  849

seq1  ATGTTAACCCCTTTCCAGGTCTCCCCTCTAGAAACCTCCTATCCCATCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAACCCCTTTCCAGGTCTCCCCTCTAGAAACCTCCTATCCCATCCC  899

seq1  CTTCTCCCTGCCTCTATGAGGATGTTCCCCCACTGTGATGGTTTGTATGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCTGCCTCTATGAGGATGTTCCCCCACTGTGATGGTTTGTATGT  949

seq1  TCTTGGACCAGGGAGTGGCACCATTTGGAGGAGTGGCCTTCTTGGAATAT  1000
      ||||||||||||||||| |||||||||||||| |||||||||||||||  
seq2  TCTTGGACCAGGGAGTGCCACCATTTGGAGGATTGGCCTTCTTGGAATTA  999

seq1  GT-GTGACCTGGTTGGAGTAGGTGTGTCACTGTTGGTGTGGGCATAAGAT  1049
      || |||| || ||||||||| ||||||| |||||||||||||||| ||||
seq2  GTGGTGA-CTTGTTGGAGTA-GTGTGTC-CTGTTGGTGTGGGCAT-AGAT  1045

seq1  CCTCACCCTAGTTGCTTGGAATTCAGTCTTC  1080
      ||||||||||||||| |||||||||| ||||
seq2  CCTCACCCTAGTTGCCTGGAATTCAGCCTTC  1076

seq1: chr3_81689057_81689591
seq2: B6Ng01-044E08.g_68_602 (reverse)

seq1  AACGAAAAGCTCATCATTCAATTCCCAGATGCTTTTTGAACTTTTTCAAA  50
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACGAAAAGCTCATCATACAATTCCCAGATGCTTTTTGAACTTTTTCAAA  50

seq1  GAGAGTGTGATAGCATCATCTCTAACTAGGAGTCATCTTTAGCTACCTGA  100
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGAGTGTGATAGCATCATCTCTAACTAGGAGTCATCTTTAGATACCTGA  100

seq1  GATTGCTGGCTCTCACCCCACCACACACACACAAACACCCAGATGGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTGGCTCTCACCCCACCACACACACACAAACACCCAGATGGTGCT  150

seq1  TCCTTGCAAGTTCCCCCCAAGACACACCCCCTCCCAGATGTTGTGTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCAAGTTCCCCCCAAGACACACCCCCTCCCAGATGTTGTGTCATC  200

seq1  CGTGGTACCATTCTCCTTATCTGTGTCCATGTTTGGTCAGTCCAGCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGTACCATTCTCCTTATCTGTGTCCATGTTTGGTCAGTCCAGCCTGA  250

seq1  AGCTGGGACCCACTCTTCCAAGGTGTTTATCTTTGCTGTGTAGACTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGACCCACTCTTCCAAGGTGTTTATCTTTGCTGTGTAGACTTGTT  300

seq1  TAGCATCCACACTACATTGCCTAGAACCACTGGCTGTCAAACACTGGCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATCCACACTACATTGCCTAGAACCACTGGCTGTCAAACACTGGCAC  350

seq1  TGTGCCCCAGCAAGTTTGGCTCTATTAAAATCAGCAGAGACAGGCTAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCCAGCAAGTTTGGCTCTATTAAAATCAGCAGAGACAGGCTAGAT  400

seq1  ATAAAAAGGTCTAGCAATAACCTGCTCCTGTGACCTCACTCAGCTGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGGTCTAGCAATAACCTGCTCCTGTGACCTCACTCAGCTGAGTA  450

seq1  AGACTAGATGTTTTACTGGACAATAGTAATACCTTTACATGAAATGAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAGATGTTTTACTGGACAATAGTAATACCTTTACATGAAATGAGGA  500

seq1  CTGAGTTCTCTCTTATCAGTCAGATTCATGAATTC  535
      |||||||||||||||||||||||||||||||||||
seq2  CTGAGTTCTCTCTTATCAGTCAGATTCATGAATTC  535