BAC Information

Click to search

BAC

Clone NameB6Ng01-044I22
Chromosome3 (Build37)
Map Location 82,981,241 - 83,033,775
singlet/doubletdoublet
Overlap genenone
Upstream geneMtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094
Downstream geneDchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044I22.bB6Ng01-044I22.g
ACCDH870276DH870277
length1,1221,167
definitionDH870276|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I22, 5' end.DH870277|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,032,637 - 83,033,775)(82,981,241 - 82,982,265)
sequence
gaattcagtgctgggcttgtaacaggagactaagcattgaacagaaaaag
gattttcttaaagatttatttattttatgtatatgagtacattgtagctt
tcttcagacacaccaaaagaggacatcagatcccattacagatggttgtg
agccactatgtggttgctgggaattgaactcaggacctctggaagagcag
tcagtgttcttaactgctgagccatctctccagcccccccccccacccag
taaaagaatttttacaaaagcactgaacacatttatccaaggagtggtca
ggtttatttttatatgcctacatacaagtcaaaggacaggccagaggggc
agcccagtgaggctccctcccctggcgtctcagcaccttcctgataccag
atgggttggacagaacagcaggaatccaaagagaagggtgacccttcatg
tccccagcaaaggacaaacaccagctactgctctctctgcattcacttgt
gcttccagtgacagcatcagagccaaagggaatggggtaccatatgacct
gctgaaagctaaatctccttcccttctgcaggtgccctagctcaggacag
aaggccatgtgtatgttatggaaactctactattcacacacacacacaca
cacacacacacacacacacacacaattaaaaatgtaactagcatgccaaa
tgctagcaggtgttctctcttggggcaggagcatgggaaatgttcatttt
cttaaaagatatgtttttgtacagttttatggagatcttttccatttata
gacccaaattagctccgctgttgtgtgagtcttaagagccatcctctccc
actctacccacgaaggagagcctgaaacacctgtaaggtccacggggaag
agctggattgggaggttccccaaaggattctctttatgtttctctcgggt
ggggggtggggagaatgcgaccgtaaatctgactcagtcaactgggcttc
agggctgctgctcctactgtacttgagaagccaggttgagaagctcggtt
tgaccagaagtcctcaccctggaaggatgagtccagaaagagcctgatag
ggcaggtaactcaagtaggatc
gaattccacagcactccaccctccagacagcttgtgcattccattcaccc
tcctcttccaggacgctccatgtgctttcaagggtgtgatgccaatatcc
tatttaaggctaagcactaaagagtcatttattttcgacactttggcttg
ttgtttctccagaaatagccacccactagaaaagcaagtttccgtaacca
caactaagagcagcactaaactgtggacataagcataagtatttagaaga
caatttgacagatacatcgtgctcacttggcgaaacaacagcagtggctt
ccccactagggcttataactttccccaaacatggacgtttggccagtttt
atggtaacagacataacctcccttctgtgaagcagggcctcgaatcagtc
gagaatcagctagttatgccaataatagtctgcctatgattggcccagtg
ggtaggttttgcttggcccctcaatgtatttttgaagtgctttgatttat
gacttcctttgttcctttactataaaaactgcctgaaacgtgccacgttt
gagcatgggatttggggaaacctgtacctctgttctggggttatgttcaa
tcatttggctacagaacaaactgtctcgtactgtctttgaagtaagggct
gtgctcatcagtcaagactttctagctaatatttacctcacgccaattgt
ctctgttaaataacttactagttttctgtctctgaaagctaagggttaaa
ttagtgtttgtcataagaatggtttttaaaaaaatcagtgaatgtgtagc
atattgaaatgtactgtgctgggcataaacagtatagaatttcattctta
taaatctgtatgaaaaccagtcgactctgttgtttggtggttaagtcaac
atatgtgttttgaagatcaggctccttcccacgatttgatgtctagactg
cttagtgaggagcttgcagaatgagttatcagaggttgaaaggacgaggc
taccatccagtcctgacttctgagaggagagagggtaagaaagagtgtga
ccgtgaagaacacagggctctgtaaagtcttgactggccaaatgtatcta
agtgcaatgcccagttgttggacacttgtagaatgtcagttttgtaccca
caagtgtgcattggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83032637_83033775
seq2: B6Ng01-044I22.b_45_1166 (reverse)

seq1  GATCCTACTTGAGTTTACCCTGCCCTATCAGCGCTTCTTTCTTGGACTAC  50
      |||||||||||||||   ||||||||||||| || |||||| |||||| |
seq2  GATCCTACTTGAGTT--ACCTGCCCTATCAG-GC-TCTTTC-TGGACT-C  44

seq1  ATCCTTCCAGGGTGAGGACCTCTGTGCTCAAACCTGGCTTCTCAAACCTG  100
      ||||||||||||||||||| ||  || |||||||  ||||||| ||||||
seq2  ATCCTTCCAGGGTGAGGACTTC--TGGTCAAACCGAGCTTCTC-AACCTG  91

seq1  GCTTCTCAAAGTACAAGTAGGAGCAGCAGGCCTGAAAGCCCAGGTGACAT  150
      ||||||| |||||| |||||||||||||| |||| |||||||| |||| |
seq2  GCTTCTC-AAGTAC-AGTAGGAGCAGCAGCCCTG-AAGCCCAGTTGAC-T  137

seq1  GAGTCAGATTTACGGTCCGCATTCTCCCCACCCCCACCCCGAGAGAAACA  200
      |||||||||||||||| ||||||||||||||||||  |||||||||||||
seq2  GAGTCAGATTTACGGT-CGCATTCTCCCCACCCCCCACCCGAGAGAAACA  186

seq1  TAAAGAGGAATCCTTTGGGGAAACCTCCCAAATCCAGCTCTTCCCCGTGG  250
      |||||| ||||||||||||| |||||||| ||||||||||||||||||||
seq2  TAAAGA-GAATCCTTTGGGG-AACCTCCC-AATCCAGCTCTTCCCCGTGG  233

seq1  ACCTTACAGGTGTTTCAGGCTCTCCTTCGTGGGTAGAGTGGGAGAGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACAGGTGTTTCAGGCTCTCCTTCGTGGGTAGAGTGGGAGAGGATG  283

seq1  GCTCTTAAGACTCACACAACAGCGGAGCTAATTTGGGTCTATAAATGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTAAGACTCACACAACAGCGGAGCTAATTTGGGTCTATAAATGGAA  333

seq1  AAGATCTCCATAAAACTGTACAAAAACATATCTTTTAAGAAAATGAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCCATAAAACTGTACAAAAACATATCTTTTAAGAAAATGAACAT  383

seq1  TTCCCATGCTCCTGCCCCAAGAGAGAACACCTGCTAGCATTTGGCATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATGCTCCTGCCCCAAGAGAGAACACCTGCTAGCATTTGGCATGCT  433

seq1  AGTTACATTTTTAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACATTTTTAATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  483

seq1  GTGTGAATAGTAGAGTTTCCATAACATACACATGGCCTTCTGTCCTGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAATAGTAGAGTTTCCATAACATACACATGGCCTTCTGTCCTGAGC  533

seq1  TAGGGCACCTGCAGAAGGGAAGGAGATTTAGCTTTCAGCAGGTCATATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCACCTGCAGAAGGGAAGGAGATTTAGCTTTCAGCAGGTCATATGG  583

seq1  TACCCCATTCCCTTTGGCTCTGATGCTGTCACTGGAAGCACAAGTGAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCATTCCCTTTGGCTCTGATGCTGTCACTGGAAGCACAAGTGAATG  633

seq1  CAGAGAGAGCAGTAGCTGGTGTTTGTCCTTTGCTGGGGACATGAAGGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGAGCAGTAGCTGGTGTTTGTCCTTTGCTGGGGACATGAAGGGTC  683

seq1  ACCCTTCTCTTTGGATTCCTGCTGTTCTGTCCAACCCATCTGGTATCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCTCTTTGGATTCCTGCTGTTCTGTCCAACCCATCTGGTATCAGG  733

seq1  AAGGTGCTGAGACGCCAGGGGAGGGAGCCTCACTGGGCTGCCCCTCTGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCTGAGACGCCAGGGGAGGGAGCCTCACTGGGCTGCCCCTCTGGC  783

seq1  CTGTCCTTTGACTTGTATGTAGGCATATAAAAATAAACCTGACCACTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTTTGACTTGTATGTAGGCATATAAAAATAAACCTGACCACTCCT  833

seq1  TGGATAAATGTGTTCAGTGCTTTTGTAAAAATTCTTTTACTGGGTGGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATAAATGTGTTCAGTGCTTTTGTAAAAATTCTTTTACTGGGTGGGGG  883

seq1  GGGGGGCTGGAGAGATGGCTCAGCAGTTAAGAACACTGACTGCTCTTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGCTGGAGAGATGGCTCAGCAGTTAAGAACACTGACTGCTCTTCCA  933

seq1  GAGGTCCTGAGTTCAATTCCCAGCAACCACATAGTGGCTCACAACCATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCTGAGTTCAATTCCCAGCAACCACATAGTGGCTCACAACCATCT  983

seq1  GTAATGGGATCTGATGTCCTCTTTTGGTGTGTCTGAAGAAAGCTACAATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGGATCTGATGTCCTCTTTTGGTGTGTCTGAAGAAAGCTACAATG  1033

seq1  TACTCATATACATAAAATAAATAAATCTTTAAGAAAATCCTTTTTCTGTT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCATATACATAAAATAAATAAATCTTTAAGAAAATCCTTTTTCTGTT  1083

seq1  CAATGCTTAGTCTCCTGTTACAAGCCCAGCACTGAATTC  1139
      |||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTTAGTCTCCTGTTACAAGCCCAGCACTGAATTC  1122

seq1: chr3_82981241_82982265
seq2: B6Ng01-044I22.g_221_1232

seq1  TCTCCAGAAATAGCCACCCACTAGAAAAGCAAGTTTCCGTAACCACAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAAATAGCCACCCACTAGAAAAGCAAGTTTCCGTAACCACAACT  50

seq1  AAGAGCAGCACTAAACTGTGGACATAAGCATAAGTATTTAGAAGACAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAGCACTAAACTGTGGACATAAGCATAAGTATTTAGAAGACAATT  100

seq1  TGACAGATACATCGTGCTCACTTGGCGAAACAACAGCAGTGGCTTCCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGATACATCGTGCTCACTTGGCGAAACAACAGCAGTGGCTTCCCCA  150

seq1  CTAGGGCTTATAACTTTCCCCAAACATGGACGTTTGGCCAGTTTTATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGCTTATAACTTTCCCCAAACATGGACGTTTGGCCAGTTTTATGGT  200

seq1  AACAGACATAACCTCCCTTCTGTGAAGCAGGGCCTCGAATCAGTCGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACATAACCTCCCTTCTGTGAAGCAGGGCCTCGAATCAGTCGAGAA  250

seq1  TCAGCTAGTTATGCCAATAATAGTCTGCCTATGATTGGCCCAGTGGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTAGTTATGCCAATAATAGTCTGCCTATGATTGGCCCAGTGGGTAG  300

seq1  GTTTTGCTTGGCCCCTCAATGTATTTTTGAAGTGCTTTGATTTATGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTTGGCCCCTCAATGTATTTTTGAAGTGCTTTGATTTATGACTT  350

seq1  CCTTTGTTCCTTTACTATAAAAACTGCCTGAAACGTGCCACGTTTGAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGTTCCTTTACTATAAAAACTGCCTGAAACGTGCCACGTTTGAGCA  400

seq1  TGGGATTTGGGGAAACCTGTACCTCTGTTCTGGGGTTATGTTCAATCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTTGGGGAAACCTGTACCTCTGTTCTGGGGTTATGTTCAATCATT  450

seq1  TGGCTACAGAACAAACTGTCTCGTACTGTCTTTGAAGTAAGGGCTGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTACAGAACAAACTGTCTCGTACTGTCTTTGAAGTAAGGGCTGTGCT  500

seq1  CATCAGTCAAGACTTTCTAGCTAATATTTACCTCACGCCAATTGTCTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTCAAGACTTTCTAGCTAATATTTACCTCACGCCAATTGTCTCTG  550

seq1  TTAAATAACTTACTAG-TTTCTGTCTCTGAAAGCTAAGGGTTAAATTAGT  599
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTAAATAACTTACTAGTTTTCTGTCTCTGAAAGCTAAGGGTTAAATTAGT  600

seq1  GTTTGTCATAAGAATGG-TTTTAAAAAAATCAGTGAATGTGTAGCATTAT  648
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  GTTTGTCATAAGAATGGTTTTTAAAAAAATCAGTGAATGTGTAGCA-TAT  649

seq1  TGAAATGTACTGTGCTGGGCATAAACAGTAATAGAATTTCATTCTTATAA  698
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGAAATGTACTGTGCTGGGCATAAACAGT-ATAGAATTTCATTCTTATAA  698

seq1  ATCTGTATGAAAACCAGTCGACTCTG-TGTTTGGTGGTTAAGTCAACATA  747
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATCTGTATGAAAACCAGTCGACTCTGTTGTTTGGTGGTTAAGTCAACATA  748

seq1  TGTGTTTTGAAGATCAGGCTCCTTCCCACGATTTGATGTCTAGACTGCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTTGAAGATCAGGCTCCTTCCCACGATTTGATGTCTAGACTGCTT  798

seq1  AGTTGAGGAGCTTGCAGAATGAGTTATCAGAGGGTGGAAAGGACCGAGGC  847
      || |||||||||||||||||||||||||||| ||| ||||||| ||||||
seq2  AG-TGAGGAGCTTGCAGAATGAGTTATCAGA-GGTTGAAAGGA-CGAGGC  845

seq1  TACCATCCAGGTCTGACTTCTGAGAGGAGAGAGGGACAGATAGAGTGTGG  897
      ||||||||||  |||||||||||||||||||||||  ||| ||||||| |
seq2  TACCATCCAGTCCTGACTTCTGAGAGGAGAGAGGGTAAGAAAGAGTGT-G  894

seq1  ACCGTGAAGAACACAGGGCTCTGGTAGAGTCTTGACTGGGCCAATGGTAT  947
      |||||||||||||||||||||| ||| |||||||||| ||||||  ||||
seq2  ACCGTGAAGAACACAGGGCTCT-GTAAAGTCTTGACT-GGCCAAATGTAT  942

seq1  CCTAGTGCAAATGCCCAGTTGTTGGAACACTGTGTAGGAATGGCCCAGTT  997
      |  ||||| |||||||||||||||| ||||| |||| |||||   ||| |
seq2  CTAAGTGC-AATGCCCAGTTGTTGG-ACACT-TGTA-GAATG--TCAG-T  985

seq1  TTTGTACCCACCAGGCTGTCATTGGTTG  1025
      ||||||||||| ||  || |||||||||
seq2  TTTGTACCCACAAGTGTG-CATTGGTTG  1012