BAC Information

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BAC

Clone NameB6Ng01-044I23
Chromosome3 (Build37)
Map Location 103,075,006 - 103,208,931
singlet/doubletdoublet
Overlap geneTrim33
Upstream geneEG433633, Ngfb, Tspan2, Tshb, Sycp1, LOC668425, LOC100043517, Nr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2
Downstream geneSyt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1, Magi3, EG433634
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044I23.bB6Ng01-044I23.g
ACCDH870278DH870279
length678177
definitionDH870278|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I23, 5' end.DH870279|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,208,254 - 103,208,931)(103,075,006 - 103,075,182)
sequence
gaattcactatgtagtctaggatggccttgaactcacaaagatcctcctg
cctctggctctcaagtgctgggattaaaggcaagtgctaccatgactggc
ttaggagaaaaatcttagatttttggtaaatggtgatttgttaggaaaca
aaaagcactaatcataaaagaaaaatagttgacaaactagacttgccaga
ttttaagatgctgttttctatgaagccccgttaaagacatcagggctgcc
attcaacggtcgagtgtttcttgtccagtatgcaaaagggtctgggttca
gtctcctgccctgggagttaggagagaaaccttattaataacataaaaag
tcaaatcctcaagacctgcctcagtaaagctgtcaaatgtaaattggtaa
gaccagaactcaggaacctcacgtgatggaaggagagtctaacctgcagt
ctctcagctttctttcccttcacgtctatggggctgagatgtcctgaaga
tttggctgtctctctgcagatgtaccagagcactgagcagcatgatctta
ttcagccaccactcctcaaacagctttgtcaccgcagatagtgaagctaa
gtgacagtggccctggtctcagaaaggagagcaatggaatccttgatctc
catgtacagattgctctgtgtgtgtgtg
acagagatctatctgcctctgtcacctaagtgacgtgaaaggcatgcacc
actatgcccagccaccattctttacggtaataaaaaagtcaatttttctg
tatgctaggaagttacaatcctatttttcttcccttctcatttgtgtggg
gtgtgtgtgtgtgtgtgtttaggattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_103208254_103208931
seq2: B6Ng01-044I23.b_44_721 (reverse)

seq1  CACACACACACAGAGCAATCTGTACATGGAGATCAAGGATTCCATTGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACAGAGCAATCTGTACATGGAGATCAAGGATTCCATTGCTC  50

seq1  TCCTTTCTGAGACCAGGGCCACTGTCACTTAGCTTCACTATCTGCGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTGAGACCAGGGCCACTGTCACTTAGCTTCACTATCTGCGGTGA  100

seq1  CAAAGCTGTTTGAGGAGTGGTGGCTGAATAAGATCATGCTGCTCAGTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGTTTGAGGAGTGGTGGCTGAATAAGATCATGCTGCTCAGTGCT  150

seq1  CTGGTACATCTGCAGAGAGACAGCCAAATCTTCAGGACATCTCAGCCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACATCTGCAGAGAGACAGCCAAATCTTCAGGACATCTCAGCCCCA  200

seq1  TAGACGTGAAGGGAAAGAAAGCTGAGAGACTGCAGGTTAGACTCTCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACGTGAAGGGAAAGAAAGCTGAGAGACTGCAGGTTAGACTCTCCTTC  250

seq1  CATCACGTGAGGTTCCTGAGTTCTGGTCTTACCAATTTACATTTGACAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACGTGAGGTTCCTGAGTTCTGGTCTTACCAATTTACATTTGACAGC  300

seq1  TTTACTGAGGCAGGTCTTGAGGATTTGACTTTTTATGTTATTAATAAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGAGGCAGGTCTTGAGGATTTGACTTTTTATGTTATTAATAAGGT  350

seq1  TTCTCTCCTAACTCCCAGGGCAGGAGACTGAACCCAGACCCTTTTGCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCCTAACTCCCAGGGCAGGAGACTGAACCCAGACCCTTTTGCATA  400

seq1  CTGGACAAGAAACACTCGACCGTTGAATGGCAGCCCTGATGTCTTTAACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAAGAAACACTCGACCGTTGAATGGCAGCCCTGATGTCTTTAACG  450

seq1  GGGCTTCATAGAAAACAGCATCTTAAAATCTGGCAAGTCTAGTTTGTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTCATAGAAAACAGCATCTTAAAATCTGGCAAGTCTAGTTTGTCAA  500

seq1  CTATTTTTCTTTTATGATTAGTGCTTTTTGTTTCCTAACAAATCACCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTCTTTTATGATTAGTGCTTTTTGTTTCCTAACAAATCACCATT  550

seq1  TACCAAAAATCTAAGATTTTTCTCCTAAGCCAGTCATGGTAGCACTTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAAAATCTAAGATTTTTCTCCTAAGCCAGTCATGGTAGCACTTGCC  600

seq1  TTTAATCCCAGCACTTGAGAGCCAGAGGCAGGAGGATCTTTGTGAGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCCCAGCACTTGAGAGCCAGAGGCAGGAGGATCTTTGTGAGTTCA  650

seq1  AGGCCATCCTAGACTACATAGTGAATTC  678
      ||||||||||||||||||||||||||||
seq2  AGGCCATCCTAGACTACATAGTGAATTC  678

seq1: chr3_103075006_103075182
seq2: B6Ng01-044I23.g_73_249

seq1  ACAGAGATCTATCTGCCTCTGTCACCTAAGTGACGTGAAAGGCATGCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGATCTATCTGCCTCTGTCACCTAAGTGACGTGAAAGGCATGCACC  50

seq1  ACTATGCCCAGCCACCATTCTTTACGGTAATAAAAAAGTCAATTTTTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGCCCAGCCACCATTCTTTACGGTAATAAAAAAGTCAATTTTTCTG  100

seq1  TATGCTAGGAAGTTACAATCCTATTTTTCTTCCCTTCTCATTTGTGTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAGGAAGTTACAATCCTATTTTTCTTCCCTTCTCATTTGTGTGGG  150

seq1  GTGTGTGTGTGTGTGTGTTTAGGATTG  177
      |||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTTTAGGATTG  177