BAC Information

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BAC

Clone NameB6Ng01-044M23
Chromosome12 (Build37)3 (Build37)
Map Location 9,399,712 - 9,400,866105,886,731 - 105,886,771
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBC106175, Rhob, Slc7a15, LOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32
Downstream geneLOC633030, LOC100042238, Osr1, LOC382567, Nt5c1b, Rdh14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044M23.bB6Ng01-044M23.g
ACCDH870458DH870459
length1,140338
definitionDH870458|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M23, 5' end.DH870459|Mus musculus domesticus DNA, BAC clone: B6Ng01-044M23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,399,712 - 9,400,866)(105,886,731 - 105,886,771)
sequence
gaattcaaaggacagcatgtgattaaccaagctagatgccacatggcctc
atagaactgtgtgtgaagttagtatacatagaacaaagtactgctaagtg
aatgagagatgactctgcctacaaattatgaagtcttccaccagtattaa
gtttgaacactaatactatatgaattgatgaatggttagtaacctactag
ttttcttacacattgggattttggaattcaattttcattcatttattcaa
atagtaacaaagaggttaattaaatatctacaggttgggcatcagtacat
cttggggtaaaaatggtgacaagatgcatcagggtcactcgaacatgaag
gttgtagtgcagaagtctagagagaattgaactaagggatccatattcaa
atataagaggaccactgccagaggtctgtgaactgatgtctgagtaggta
ctgtgatggtgacatgaacatggtgagtccctctaccctgagggataaaa
gattccctaagaaaaagatgtcagagggggagtaagaggagaaaggctat
gtcaactcagtagagaattctaaacagacacaatgtctcatgtaaagctt
gaaaggagaatgcaagagactcttagcacctgaaagcacatcaggttgga
acaagaagtggggtgataacttctgaggtaagaaaagttgtaagggttgc
acctagggtgtctctgaaacaggaaaccaattctgttctttactcaatgt
cttagtcagggtttctattcctgtgcaaacatcatgaacaagaagcaagt
tggggaggaaatgatttatttggcttacacttccatgctgctgttcatca
ccaaaggatgtcagactggaactcaagcagtcagaagcacgagctgatgc
agaagccatggagggatgttccttactggcttgcttccctgcttgctcag
ctgctctcttattgaaccagactaccagcccagaggatgtcccaccccac
agggcctttcccctggatcactaatgagagaatgcctacagctggatctc
acgagacattcctcactgaagctcttctctgtgaatacctccagctgtgt
tcaggttggaacaaaactaagccagtcactcagttaccat
gaattcagtactaaaaccatctggccctggacatttttggatgggaagtt
tttaatgactgcttctatttccttaggtgttataggactgtttaaacagt
ttacctgatctttatttaactttggtaagtggtctagaaaatcacccatt
tcacctagattttccagtttagttgagtgtaggcttttgtagtaagatct
gatatattttatttccttagtttctgttgttttgtctccagtttcatttc
ttattttgtcaatttggatcctgtcattgtgttttttaattagtttagct
aaggatttatctaccttgttgattttctcaaagaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_9399712_9400866
seq2: B6Ng01-044M23.b_46_1185

seq1  GAATTCAAAGGACAGCATGTGATTAACCAAGCTAGATGCCACATGGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGGACAGCATGTGATTAACCAAGCTAGATGCCACATGGCCTC  50

seq1  ATAGAACTGTGTGTGAAGTTAGTATACATAGAACAAAGTACTGCTAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACTGTGTGTGAAGTTAGTATACATAGAACAAAGTACTGCTAAGTG  100

seq1  AATGAGAGATGACTCTGCCTACAAATTATGAAGTCTTCCACCAGTATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGAGATGACTCTGCCTACAAATTATGAAGTCTTCCACCAGTATTAA  150

seq1  GTTTGAACACTAATACTATATGAATTGATGAATGGTTAGTAACCTACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAACACTAATACTATATGAATTGATGAATGGTTAGTAACCTACTAG  200

seq1  TTTTCTTACACATTGGGATTTTGGAATTCAATTTTCATTCATTTATTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTACACATTGGGATTTTGGAATTCAATTTTCATTCATTTATTCAA  250

seq1  ATAGTAACAAAGAGGTTAATTAAATATCTACAGGTTGGGCATCAGTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAACAAAGAGGTTAATTAAATATCTACAGGTTGGGCATCAGTACAT  300

seq1  CTTGGGGTAAAAATGGTGACAAGATGCATCAGGGTCACTCGAACATGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGGTAAAAATGGTGACAAGATGCATCAGGGTCACTCGAACATGAAG  350

seq1  GTTGTAGTGCAGAAGTCTAGAGAGAATTGAACTAAGGGATCCATATTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTAGTGCAGAAGTCTAGAGAGAATTGAACTAAGGGATCCATATTCAA  400

seq1  ATATAAGAGGACCACTGCCAGAGGTCTGTGAACTGATGTCTGAGTAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGAGGACCACTGCCAGAGGTCTGTGAACTGATGTCTGAGTAGGTA  450

seq1  CTGTGATGGTGACATGAACATGGTGAGTCCCTCTACCCTGAGGGATAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATGGTGACATGAACATGGTGAGTCCCTCTACCCTGAGGGATAAAA  500

seq1  GATTCCCTAAGAAAAAGATGTCAGAGGGGGAGTAAGAGGAGAAAGGCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCTAAGAAAAAGATGTCAGAGGGGGAGTAAGAGGAGAAAGGCTAT  550

seq1  GTCAACTCAGTAGAGAATTCTAAACAGACACAATGTCTCATGTAAAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTCAGTAGAGAATTCTAAACAGACACAATGTCTCATGTAAAGCTT  600

seq1  GAAAGGAGAATGCAAGAGACTCTTAGCACCTGAAAGCACATCAGGTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAGAATGCAAGAGACTCTTAGCACCTGAAAGCACATCAGGTTGGA  650

seq1  ACAAGAAGTGGGGTGATAACTTCTGAGGTAAGAAAAGTTGTAAGGGTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGTGGGGTGATAACTTCTGAGGTAAGAAAAGTTGTAAGGGTTGC  700

seq1  ACCTAGGGTGTCTCTGAAACAGGAAACCAATTCTGTTCTTTACTCAATGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGGTGTCTCTGAAACAGGAAACCAATTCTGTTCTTTACTCAATGT  750

seq1  CTTAGTCAGGGTTTCTATTCCTGTGCAAACATCATGAACAAGAAGCAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCAGGGTTTCTATTCCTGTGCAAACATCATGAACAAGAAGCAAGT  800

seq1  TGGGGAGGAAATGATTTATTTGGCTTACACTTCCATGCTGCTGTTCATCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGAAATGATTTATTTGGCTTACACTTCCATGCTGCTGTTCATCA  850

seq1  CCAAAGGATGTCAGGACTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGA  900
      ||||||||||||| |||||||||||||||| |||| |||||| |||||||
seq2  CCAAAGGATGTCA-GACTGGAACTCAAGCA-GTCA-GAAGCACGAGCTGA  897

seq1  TGCAGAAGCCATGGAGGGATGTTCCTTACTGGCTTGCTTCCCCTGGCTTG  950
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  TGCAGAAGCCATGGAGGGATGTTCCTTACTGGCTTGCTTCCC--TGCTTG  945

seq1  CTCAGCTTGCTCTCTTATTGAACCAAGACTACCAGCCCAGAGATGGTCCC  1000
      |||||| ||||||||||||||||| |||||||||||||||||   |||||
seq2  CTCAGC-TGCTCTCTTATTGAACC-AGACTACCAGCCCAGAGGATGTCCC  993

seq1  ACCCACAAGGGGCCTTTCCCCCTTGATCACTAATTGAGAAAATGCCTTAC  1050
      |||| ||  |||||||| ||||| ||||||||| ||||| |||||| |||
seq2  ACCC-CACAGGGCCTTT-CCCCTGGATCACTAA-TGAGAGAATGCC-TAC  1039

seq1  AGCTGGATCTCACGGAGGCATTTCCTCAACTGAAGCTTCTTTCTCTGTG-  1099
      ||||||||||||| ||| || |||||| |||||||||   ||||||||| 
seq2  AGCTGGATCTCAC-GAGACA-TTCCTC-ACTGAAGCT--CTTCTCTGTGA  1084

seq1  ATAACTCCAGCTGTG-TCAAGTTGACACAAAACT-AGCCAGTACACTCAG  1147
      ||| ||||||||||| ||| ||||  |||||||| ||||||| |||||||
seq2  ATACCTCCAGCTGTGTTCAGGTTGGAACAAAACTAAGCCAGT-CACTCAG  1133

seq1  TAAACCAT  1155
      |  |||||
seq2  T-TACCAT  1140

seq1: chr3_105886731_105886771
seq2: B6Ng01-044M23.g_363_403 (reverse)

seq1  TGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGC  41
      |||||||||||||||||||||||| |||||||| |||||||
seq2  TGGTTCTTTGAGAAAATCAACAAGGTAGATAAATCCTTAGC  41