BAC Information

Click to search

BAC

Clone NameB6Ng01-045E21
Chromosome7 (Build37)3 (Build37)
Map Location 31,617,979 - 31,618,221134,189,201 - 134,190,279
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp, Hcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26, BC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2
Downstream geneFfar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334, LOC100043834, LOC546947, LOC677233, LOC100043337, LOC546949, LOC100043836, EG626305, EG668342, EG626330, LOC100043340, LOC100043343, EG626358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045E21.bB6Ng01-045E21.g
ACCDH870798DH870799
length6421,054
definitionDH870798|Mus musculus domesticus DNA, BAC clone: B6Ng01-045E21, 5' end.DH870799|Mus musculus domesticus DNA, BAC clone: B6Ng01-045E21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(31,617,979 - 31,618,221)(134,189,201 - 134,190,279)
sequence
gaattctcttacttgccttggtgtagttacagtcctttcctggcttcttt
tagccattgtttcccaccttgaagggtgtacctcaaataagtaacttcag
tctgacaccagagcctttttagctgaggctctgtcttctgttgcccagat
ttcctgtcaagatcttgtcttttctttctctcctaccactgtggccgagt
ttctagtcaaatttctttcttgtctacgatccctcctgttttctctttct
tctgcctcttgcctcttgcctctctctctctctctctctctctctctctc
gtaatatgccttctctgcctcttactggttctatcctaaatatttctcat
ttggggtatctctctcatctcagacctctctaatctctttcatctctact
ttcactgtcatctatctctcttgagtctgctgaagctttgcttttcctta
cagtccaagctcacctttttctagacctctatacccatttgtcagagcct
gatgattagactcataggtgctccttacctgggacagaagttttaagtgg
gcagatgtctccctcaatggttagcagcttagggctgggctgccctagaa
gagaaaacacatggggcagggaagggaaggcagctctcacag
gaattcctaatattttcaaagtttaatgatttgattgtgattcttaaatt
gggttttagaattatttttttaaaatattataattattgtactgagcaaa
ttaatttataatgtagtttaaaatatattgatttgaattctagaataaaa
tatctttattttactattctttagcagaaataaatgtcatattgtaaaat
aatgttccttgtgaactttaattgattttcacagactatgtaatcatttt
gatttttccattgacttgaaaaatacagttgtctaattcatagatgacag
aacaattcaggattgtcagaagagatatttgccccatcatttagtgtgtt
taatatattgcaatcaatgatgccacaaaacttacagtggtgttttgaac
tttctaaatgttggcaaaattcagtagtgcagtggttatatcattagtat
ttgtaaaaatataaacttaaataatttccacataatattgactcagaatt
agcaaggagagtttatagatgttaatgataatcattgatttatatttatg
tgtgttattagacaactgccagtctgcataacaaagaaatttgactactg
attgtctatatatagaaatattttaaaaatactttataaatactctataa
atacattcaaaataattttataattaagttagtaaaataaaaaattatga
tttcatgttatgctagctactgatttgaaaatgaatctgttatgaaaatt
ttgtttgttgatcacgtattattttacaataaaaagatcatgtatctttt
ttttaaatattgacaaaatagttatttctttagtaccgagaaagtgtata
atggatgtaccaacaatctatcctaagactgctttaaatgtgtggtaccc
aactggcacctcactcatttatgctaaggtctagttttattcatatccat
tatatgtacttaataggtacaatgtacttagtaattgaccacattctttc
ttcttaaagaagcatccagatattttcgttgcgaagaatttttaacttta
aaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_31617979_31618221
seq2: B6Ng01-045E21.b_433_682 (reverse)

seq1  CTGTGAGAGCTGCCTTCCCTTCCCTGCCCCACGTGTTTTCTCTTCTAGGG  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGTGAGAGCTGCCTTCCCTTCCCTGCCCCATGTGTTTTCTCTTCTAGGG  50

seq1  CAGCCCCGCCCTAAGCTGCTAACCAGTGAGGGAGACATCTGCCCACTTAA  100
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  CAGCCCAGCCCTAAGCTGCTAACCATTGAGGGAGACATCTGCCCACTTAA  100

seq1  AACTTCTGTCCCAGGTAAGGAGCACCTACAAGTCTAATCACCAGGCTCTG  150
      ||||||||||||||||||||||||||||  |||||||||| |||||||||
seq2  AACTTCTGTCCCAGGTAAGGAGCACCTATGAGTCTAATCATCAGGCTCTG  150

seq1  ACAAATGGGTATACAGGTCTAGAAAAAGGTGAGCTTAGACTGTAAGGAAG  200
      ||||||||||||| |||||||||||||||||||||| |||||||||||| 
seq2  ACAAATGGGTATAGAGGTCTAGAAAAAGGTGAGCTTGGACTGTAAGGAAA  200

seq1  AGCAAAGCTCCAGCAGACTCAGGATA-------GACAGTGAAAATAGAGA  243
      ||||||||| ||||||||||| || |       |||||||||| ||||||
seq2  AGCAAAGCTTCAGCAGACTCAAGAGAGATAGATGACAGTGAAAGTAGAGA  250

seq1: chr3_134189201_134190279
seq2: B6Ng01-045E21.g_65_1118 (reverse)

seq1  ATTTTAAAAGTTAAAAAAAATTCTTCTGCAAACAGAAAAATAATCTGGAT  50
      ||||| ||||||   ||||||||||| ||||   |||||   ||||||||
seq2  ATTTT-AAAGTT---AAAAATTCTTC-GCAA--CGAAAA--TATCTGGAT  41

seq1  GTATCTTTTAAAAGAAGAAAGAATGTGGTCAAATTTACCTAAGTTACATT  100
      |  |||||   |||||||||||||||||||||  ||| ||||| |||| |
seq2  GCTTCTTT---AAGAAGAAAGAATGTGGTCAA--TTA-CTAAG-TACA-T  83

seq1  TGTACCTATTTAAGGTACATATAAATGGGATATGAATAAAACTAGACCTT  150
      ||||||||||  | ||||||||||   |||||||||||||||||||||||
seq2  TGTACCTATT--AAGTACATATAA--TGGATATGAATAAAACTAGACCTT  129

seq1  AGCATAAATGAGTGAGGGTGCCAAGTTGGGTACCACACATTTAAAGCAGT  200
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  AGCATAAATGAGTGA-GGTGCC-AGTTGGGTACCACACATTTAAAGCAGT  177

seq1  CCTTAGGATAGATTGTTGGTACATCCATTAATACACCTTTCTCGGTACTA  250
       |||||||||||||||||||||||||||| ||||| ||||||||||||||
seq2  -CTTAGGATAGATTGTTGGTACATCCATT-ATACA-CTTTCTCGGTACTA  224

seq1  AAGAAATAACTATTTTGTCAATATTT-AAAAAAAGATACATGATCTTTTT  299
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGAAATAACTATTTTGTCAATATTTAAAAAAAAGATACATGATCTTTTT  274

seq1  ATTGTAAAATAATACGTGATCAACAAACAAAATTTTCATAACAGATTCAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAAATAATACGTGATCAACAAACAAAATTTTCATAACAGATTCAT  324

seq1  TTTCAAATCAGTAGCTAGCATAACATGAAATCATAATTTTTTATTTTACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATCAGTAGCTAGCATAACATGAAATCATAATTTTTTATTTTACT  374

seq1  AACTTAATTATAAAATTATTTTGAATGTATTTATAGAGTATTTATAAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATTATAAAATTATTTTGAATGTATTTATAGAGTATTTATAAAGT  424

seq1  ATTTTTAAAATATTTCTATATATAGACAATCAGTAGTCAAATTTCTTTGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAATATTTCTATATATAGACAATCAGTAGTCAAATTTCTTTGT  474

seq1  TATGCAGACTGGCAGTTGTCTAATAACACACATAAATATAAATCAATGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGACTGGCAGTTGTCTAATAACACACATAAATATAAATCAATGAT  524

seq1  TATCATTAACATCTATAAACTCTCCTTGCTAATTCTGAGTCAATATTATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTAACATCTATAAACTCTCCTTGCTAATTCTGAGTCAATATTATG  574

seq1  TGGAAATTATTTAAGTTTATATTTTTACAAATACTAATGATATAACCACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTATTTAAGTTTATATTTTTACAAATACTAATGATATAACCACT  624

seq1  GCACTACTGAATTTTGCCAACATTTAGAAAGTTCAAAACACCACTGTAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACTGAATTTTGCCAACATTTAGAAAGTTCAAAACACCACTGTAAG  674

seq1  TTTTGTGGCATCATTGATTGCAATATATTAAACACACTAAATGATGGGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGGCATCATTGATTGCAATATATTAAACACACTAAATGATGGGGC  724

seq1  AAATATCTCTTCTGACAATCCTGAATTGTTCTGTCATCTATGAATTAGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTCTTCTGACAATCCTGAATTGTTCTGTCATCTATGAATTAGAC  774

seq1  AACTGTATTTTTCAAGTCAATGGAAAAATCAAAATGATTACATAGTCTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTATTTTTCAAGTCAATGGAAAAATCAAAATGATTACATAGTCTGT  824

seq1  GAAAATCAATTAAAGTTCACAAGGAACATTATTTTACAATATGACATTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCAATTAAAGTTCACAAGGAACATTATTTTACAATATGACATTTA  874

seq1  TTTCTGCTAAAGAATAGTAAAATAAAGATATTTTATTCTAGAATTCAAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGCTAAAGAATAGTAAAATAAAGATATTTTATTCTAGAATTCAAAT  924

seq1  CAATATATTTTAAACTACATTATAAATTAATTTGCTCAGTACAATAATTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATTTTAAACTACATTATAAATTAATTTGCTCAGTACAATAATTA  974

seq1  TAATATTTTAAAAAAATAATTCTAAAACCCAATTTAAGAATCACAATCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTTAAAAAAATAATTCTAAAACCCAATTTAAGAATCACAATCAA  1024

seq1  ATCATTAAACTTTGAAAATATTAGGAATTC  1079
      ||||||||||||||||||||||||||||||
seq2  ATCATTAAACTTTGAAAATATTAGGAATTC  1054