BAC Information

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BAC

Clone NameB6Ng01-045G17
Chromosome19 (Build37)3 (Build37)
Map Location 4,328,709 - 4,329,457121,918,710 - 121,918,919
singlet/doubletsingletsinglet
Overlap geneFbxl11
Upstream geneCpt1a, Mtl5, Gal, Saps3, LOC100043581, Lrp5, 1810055G02Rik, LOC100039289, Suv420h1, Chka, Tcirg1, Ndufs8, Aldh3b1, Unc93b1, LOC100039337, 1700055N04Rik, Aldh3b2, Acy3, Tbx10, Nudt8, Doc2g, Ndufv1, Gstp1, Gstp2, BC021614, Cabp2, Cdk2ap2, Pitpnm1, Aip, Tmem134, Cabp4, Gpr152, Coro1b, Ptprcap, Rps6kb2, AI790298, Tbc1d10c, Ppp1ca, Rad9, Clcf1, Pold4, Ssh3, Ankrd13d, Adrbk1
Downstream geneLOC100043628, Rhod, Syt12, 2010003K11Rik, Pcx, Lrfn4, Rce1, Gm960, Spnb3, Rbm4b, Rbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045G17.bB6Ng01-045G17.g
ACCDH870879DH870880
length745574
definitionDH870879|Mus musculus domesticus DNA, BAC clone: B6Ng01-045G17, 5' end.DH870880|Mus musculus domesticus DNA, BAC clone: B6Ng01-045G17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,328,709 - 4,329,457)(121,918,710 - 121,918,919)
sequence
gaattcactttgtagaccaggctggcctctgcctccccagtgctgggatt
aaaggcgtgtgccaccacgccctgcaacataaataattcttaaaaaaaaa
aaaaaaaaaaaaaaaaacccaaaaaaaccaaaaaagacatcttccttcta
aacccatctcagttaagtctccctgactttacatatacacaatttctctg
gcaccaataccaagccttgcaaaattttcactcggatcacttactgctaa
gcactgtcggaggacacaggattgcttcatgcgtccaggtccaccaaatt
tcttcatgtccctgcagtagtggcagactccacattctccttgcacacaa
gctttgcatttcctgcaccgcactcttctccgcctggctcctgacacaat
gggggaggctgcagcaggccttacaggtgttaagcgtggagctggcttca
tggtgtgaggctttgtgatgggaattgtaggaaccctcacctttggcctg
gtagggaatttaagctggaaaaagaaaagcatggtcaactatatccagct
gctttaaaactgaagagggcagaagactgctctgtaatgtacctggccta
ggactggcaaagagatgtctgtaggcaaaactggccacagtagatttttt
ttttttttttggggttttcgagacagggtttctctgatagccctggctgt
cctggaagtcactctgtgaccaggctggcctgagctcaaaatcca
gaattctgggaattaccatcaggagggatcttccatatatataatttgca
aaggtacacatgtatgtgtatgtttgtatatgtgcagatgcacgtatgtg
cacctgtgtgtataggcataggaggggtcagaggtcaaccctagctgctg
ttcctcaggtaacccttcctatttatttatttatttatttatttatttat
ttatttatttatttatttatttattgagccctggctgtcccagaacttac
tctgtagaccaggctggccttgaactcacagagatccacatgcctctgcc
tacagagtgctgggactaacagccctgctggattcaagtttcatttttaa
attatgtatgaatgtgtgtgagagagagtgtgcatgcaagtgcgagtgcc
tgtggaagccacagaggtgattgggtccctcagacccaattagagaaatt
gtgagccacccaacaaagtgggtgctgggaaccaaaaagcggaacatgtt
cttaaccactgagccatctctccagcctcccactctggtttttttgtttg
ttgttttgttttgttttgtttttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_4328709_4329457
seq2: B6Ng01-045G17.b_45_789

seq1  GAATTCACTTTGTAGACCAGGCTGGCCTCTGCCTCCCCAGTGCTGGGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGGCCTCTGCCTCCCCAGTGCTGGGATT  50

seq1  AAAGGCGTGTGCCACCACGCCCTGCAACATAAATAATTCTTAAAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCGTGTGCCACCACGCCCTGCAACATAAATAATTCTTAAAAAAAAA  100

seq1  AAAAAAAAAAAAAAAAACCCAAAAAAACCAAAAAAGACATCTTCCTTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAACCCAAAAAAACCAAAAAAGACATCTTCCTTCTA  150

seq1  AACCCATCTCAGTTAAGTCTCCCTGACTTTACATATACACAATTTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATCTCAGTTAAGTCTCCCTGACTTTACATATACACAATTTCTCTG  200

seq1  GCACCAATACCAAGCCTTGCAAAATTTTCACTCGGATCACTTACTGCTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAATACCAAGCCTTGCAAAATTTTCACTCGGATCACTTACTGCTAA  250

seq1  GCACTGTCGGAGGACACAGGATTGCTTCATGCGTCCAGGTCCACCAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGTCGGAGGACACAGGATTGCTTCATGCGTCCAGGTCCACCAAATT  300

seq1  TCTTCATGTCCCTGCAGTAGTGGCAGACTCCACATTCTCCTTGCACACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCATGTCCCTGCAGTAGTGGCAGACTCCACATTCTCCTTGCACACAA  350

seq1  GCTTTGCATTTCCTGCACCGCACTCTTCTCCGCCTGGCTCCTGACACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGCATTTCCTGCACCGCACTCTTCTCCGCCTGGCTCCTGACACAAT  400

seq1  GGGGGAGGCTGCAGCAGGCCTTACAGGTGTTAAGCGTGGAGCTGGCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGCTGCAGCAGGCCTTACAGGTGTTAAGCGTGGAGCTGGCTTCA  450

seq1  TGGTGTGAGGCTTTGTGATGGGAATTGTAGGAACCCTCACCTTTGGCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGAGGCTTTGTGATGGGAATTGTAGGAACCCTCACCTTTGGCCTG  500

seq1  GTAGGGAATTTAAGCTGGAAAAAGAAAAGCATGGTCAACTATATCCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGGAATTTAAGCTGGAAAAAGAAAAGCATGGTCAACTATATCCAGCT  550

seq1  GCTTTAAAACTGAAGAGGGCAGAAGACTGCTCTGTAATGTACCTGGCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAAAACTGAAGAGGGCAGAAGACTGCTCTGTAATGTACCTGGCCTA  600

seq1  GGACTGGCAAAGAGATGTCTGTAGGCAAAACTGGCCACAGTAGATTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGGCAAAGAGATGTCTGTAGGCAAAACTGGCCACAGTAGATTTTTT  650

seq1  TTTTTTTTTTGGGGTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTG  700
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTTTTTTTTGGGGTTTTCGAGACAGGGTTTCTCTG-ATAGCCCTGGCTG  699

seq1  TCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCGAGCTCAGAAATCCA  749
      |||||||| ||||||||| |||||||||||||| ||||||| |||||||
seq2  TCCTGGAAGTCACTCTGT-GACCAGGCTGGCCT-GAGCTCA-AAATCCA  745

seq1: chr3_121918710_121918919
seq2: B6Ng01-045G17.g_264_639 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  CAAAAACAAAACAAAACAAAACAACAAACAAAAAAACCAGAGTGGGAGGC  50

seq1  --------------------------------------------------  0
                                                        
seq2  TGGAGAGATGGCTCAGTGGTTAAGAACATGTTCCGCTTTTTGGTTCCCAG  100

seq1  --------------------------------------------------  0
                                                        
seq2  CACCCACTTTGTTGGGTGGCTCACAATTTCTCTAATTGGGTCTGAGGGAC  150

seq1  --------------------------------------------------  0
                                                        
seq2  CCAATCACCTCTGTGGCTTCCACAGGCACTCGCACTTGCATGCACACTCT  200

seq1  ----CAAAAACA---AAACAAAACAAAAAAATCCCCAAAC---AAGCGGG  40
          || | |||   | ||| ||   ||||||    ||||   || |  |
seq2  CTCTCACACACATTCATACATAATTTAAAAAT---GAAACTTGAATCCAG  247

seq1  ACAGTGGTGGCCCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGG  90
       ||| | ||          ||| ||||||||||| | ||||||||||| |
seq2  -CAGGGCTG----------TTAGTCCCAGCACTCTGTAGGCAGAGGCATG  286

seq1  TGGATTTC--TGAGTTTGATGCCAGCCTGGTCTACAGAGTGAGTTCCAGG  138
      ||||| ||  ||||||  | |||||||||||||||||||| |||||  ||
seq2  TGGATCTCTGTGAGTTCAAGGCCAGCCTGGTCTACAGAGTAAGTTCTGGG  336

seq1  ACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAACCAATAA  188
      ||||||||||||                                ||||||
seq2  ACAGCCAGGGCT--------------------------------CAATAA  354

seq1  ATAAATAAATAAATAAATAAAT  210
      ||||||||||||||||||||||
seq2  ATAAATAAATAAATAAATAAAT  376