BAC Information

Click to search

BAC

Clone NameB6Ng01-045I20
Chromosome3 (Build37)
Map Location 47,619,370 - 47,706,823
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC545517, LOC383849, LOC383850, LOC100039426
Downstream geneLOC666202, LOC666208, 1700018B24Rik, LOC100039404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045I20.bB6Ng01-045I20.g
ACCDH870979DH870980
length749850
definitionDH870979|Mus musculus domesticus DNA, BAC clone: B6Ng01-045I20, 5' end.DH870980|Mus musculus domesticus DNA, BAC clone: B6Ng01-045I20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,706,296 - 47,706,823)(47,619,370 - 47,620,217)
sequence
gaattcaactatgatttttgataaaacagaattttagaatataaggtcag
gcattgttactcttttcattgatgattctacagttgatttaaaagggata
ttgacagtgcttttccaatagttggatatcattttataagtagtatctgg
aataaaattgaaatatctatctatataatcctcattattcctccatgttt
ctatttgaatctctatcaatgtatctatccatagacctagatacagatat
agatcagaatctatgtatggataagtaaatgaaaagttttctgaaagtat
acaatttagttcattagtatatatgactattagtgacaatgaaagtgata
aaacaatttttattgtatattttttttaattacatctcaaatgttgtcca
ctttctcagtctcccctccaaacccccatatcctctcctccctccccctg
atcaccaacccacccacaccctcttcctggttctggcattcgcctacact
tgggcatagtcttcccaggaccaagggcctctcctcccattgatgactga
ctaggccatcctctgctacatatgcagctagagccatgtgtactcctttt
gttaatggcttagtccctagtagttctaggggtctggttggttgatattg
tttgtcttcctatggggttgaaacccgttcactccttcattctttctcta
ctcctctattgggcatctgccacaattctacaatacgaggcagtgttgc
gaattcacctggacttaggctaaaatgaaagaagaacacaacctcatcca
ttatttatagcaattacaatgaagggaagattaggtggaataaaaattac
attgtccaagtacctgagcaaaagagaaattaattcatcaagaggattaa
ttctccctaatgaagaaaaccaaaaacacttttcttttaaagcagactct
taatggtaacaagtatgaatgctttaaaatgaattgtagaaacaatctca
gtagaatatttgctagcctgcagagactctagcagtataatttctaaatt
atttagcatttaatattgatgcttctagtaaaataatttataccaagaaa
aaaaatgcttctgcttttcaagtttaacatctattatgctgcataaaact
gagagttaattacatttgtccacttacttagtgaatgtcacttgcttttc
cttgtgtttagtgagctccatttctgtacattatacatcatctactatat
attcttttggcagaaacttttttgtataaaaaatggaaaagttgggtatg
tgtaaagacactgaaaatatgctcctttttaataatgttcaaagtatctg
tgagtctgaagaattaaacaatgtgtttcttcagccctgttgctgaattg
ctagcatgaggtgtagtatttgtccactatgcgttactctttggagagtc
ttgtaatctttcatttttggtgttctttttttccaaattatacaagtact
agtatcacaatctcataaagatatcaaacttttaaagcatgaacatgtta
cctttttatgaattagttgggtggtaatttattggggatggtgttgtgtg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_47706296_47706823
seq2: B6Ng01-045I20.b_45_572 (reverse)

seq1  GCCCTTGGTCCTGGGAAGACTATGCCCAAGTGTAGGCGAATGCCAGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGGTCCTGGGAAGACTATGCCCAAGTGTAGGCGAATGCCAGAACC  50

seq1  AGGAAGAGGGTGTGGGTGGGTTGGTGATCAGGGGGAGGGAGGAGAGGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGGGTGTGGGTGGGTTGGTGATCAGGGGGAGGGAGGAGAGGATA  100

seq1  TGGGGGTTTGGAGGGGAGACTGAGAAAGTGGACAACATTTGAGATGTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGTTTGGAGGGGAGACTGAGAAAGTGGACAACATTTGAGATGTAAT  150

seq1  TAAAAAAAATATACAATAAAAATTGTTTTATCACTTTCATTGTCACTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAATATACAATAAAAATTGTTTTATCACTTTCATTGTCACTAAT  200

seq1  AGTCATATATACTAATGAACTAAATTGTATACTTTCAGAAAACTTTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATATATACTAATGAACTAAATTGTATACTTTCAGAAAACTTTTCAT  250

seq1  TTACTTATCCATACATAGATTCTGATCTATATCTGTATCTAGGTCTATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTATCCATACATAGATTCTGATCTATATCTGTATCTAGGTCTATGG  300

seq1  ATAGATACATTGATAGAGATTCAAATAGAAACATGGAGGAATAATGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATACATTGATAGAGATTCAAATAGAAACATGGAGGAATAATGAGGA  350

seq1  TTATATAGATAGATATTTCAATTTTATTCCAGATACTACTTATAAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAGATAGATATTTCAATTTTATTCCAGATACTACTTATAAAATGA  400

seq1  TATCCAACTATTGGAAAAGCACTGTCAATATCCCTTTTAAATCAACTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAACTATTGGAAAAGCACTGTCAATATCCCTTTTAAATCAACTGTA  450

seq1  GAATCATCAATGAAAAGAGTAACAATGCCTGACCTTATATTCTAAAATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATCAATGAAAAGAGTAACAATGCCTGACCTTATATTCTAAAATTC  500

seq1  TGTTTTATCAAAAATCATAGTTGAATTC  528
      ||||||||||||||||||||||||||||
seq2  TGTTTTATCAAAAATCATAGTTGAATTC  528

seq1: chr3_47619370_47620217
seq2: B6Ng01-045I20.g_70_918

seq1  GAATTCACCTGGACTTAGGCTAAAATGAAAGAAGAACACAACCTCATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTGGACTTAGGCTAAAATGAAAGAAGAACACAACCTCATCCA  50

seq1  TTATTTATAGCAATTACAATGAAGGGAAGATTAGGTGGAATAAAAATTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATAGCAATTACAATGAAGGGAAGATTAGGTGGAATAAAAATTAC  100

seq1  ATTGTCCAAGTACCTGAGCAAAAGAGAAATTAATTCATCAAGAGGATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCCAAGTACCTGAGCAAAAGAGAAATTAATTCATCAAGAGGATTAA  150

seq1  TTCTCCCTAATGAAGAAAACCAAAAACACTTTTCTTTTAAAGCAGACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTAATGAAGAAAACCAAAAACACTTTTCTTTTAAAGCAGACTCT  200

seq1  TAATGGTAACAAGTATGAATGCTTTAAAATGAATTGTAGAAACAATCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTAACAAGTATGAATGCTTTAAAATGAATTGTAGAAACAATCTCA  250

seq1  GTAGAATATTTGCTAGCCTGCAGAGACTCTAGCAGTATAATTTCTAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATATTTGCTAGCCTGCAGAGACTCTAGCAGTATAATTTCTAAATT  300

seq1  ATTTAGCATTTAATATTGATGCTTCTAGTAAAATAATTTATACCAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCATTTAATATTGATGCTTCTAGTAAAATAATTTATACCAAGAAA  350

seq1  AAAAATGCTTCTGCTTTTCAAGTTTAACATCTATTATGCTGCATAAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGCTTCTGCTTTTCAAGTTTAACATCTATTATGCTGCATAAAACT  400

seq1  GAGAGTTAATTACATTTGTCCACTTACTTAGTGAATGTCACTTGCTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTAATTACATTTGTCCACTTACTTAGTGAATGTCACTTGCTTTTC  450

seq1  CTTGTGTTTAGTGAGCTCCATTTCTGTACATTATACATCATCTACTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTTAGTGAGCTCCATTTCTGTACATTATACATCATCTACTATAT  500

seq1  ATTCTTTTGGCAGAAACTTTTTTGTATAAAAAATGGAAAAGTTGGGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTGGCAGAAACTTTTTTGTATAAAAAATGGAAAAGTTGGGTATG  550

seq1  TGTAAAGACACTGAAAATATGCTCCTTTTTAATAATGTTCAAAGTATCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGACACTGAAAATATGCTCCTTTTTAATAATGTTCAAAGTATCTG  600

seq1  TGAGTCTGAAGAATTAAACAATGTGTTTCTTCAGCCCTGTTGCTGAATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGAAGAATTAAACAATGTGTTTCTTCAGCCCTGTTGCTGAATTG  650

seq1  CTAGCATGAGGTGTAGTATTTGTCCACTATGCGTTACTCTTTGGAGAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATGAGGTGTAGTATTTGTCCACTATGCGTTACTCTTTGGAGAGTC  700

seq1  TTGTAATCTTTCATTTTTGGTGTTCTTTTTTTTCCAAATTATACAAGTAC  750
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGTAATCTTTCATTTTTGGTGTTC-TTTTTTTCCAAATTATACAAGTAC  749

seq1  TAGTATCACAATCTCATAAAGATATCAAACTTTTAAAGCATGAACATGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATCACAATCTCATAAAGATATCAAACTTTTAAAGCATGAACATGTT  799

seq1  ACC-TTTTATGAATTAGTTGGTTGTTATTTTATTGGGTAT-GTGTTGTGT  848
      ||| ||||||||||||||||| || || ||||||||| || |||||||||
seq2  ACCTTTTTATGAATTAGTTGGGTGGTAATTTATTGGGGATGGTGTTGTGT  849