BAC Information

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BAC

Clone NameB6Ng01-045J24
Chromosome3 (Build37)
Map Location 135,315,926 - 135,407,151
singlet/doubletdoublet
Overlap geneNfkb1, ENSMUSG00000045520
Upstream geneLOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745
Downstream geneSlc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868, Ppp3ca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045J24.bB6Ng01-045J24.g
ACCDH871027DH871028
length987988
definitionDH871027|Mus musculus domesticus DNA, BAC clone: B6Ng01-045J24, 5' end.DH871028|Mus musculus domesticus DNA, BAC clone: B6Ng01-045J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,406,140 - 135,407,151)(135,315,926 - 135,316,950)
sequence
gaattcatgctctactgttctctgtaacattatgaactagggaaaactat
ctagccttctctccacagctggattccctcatctacggcatgaggttaag
atgcgctatagagtcaacataaaactgagtgacctacggtatgtaagata
aatttgaagtatatggctcataacagatattcaacaaagtatagatacaa
ttgttattgcagtgggcaagtactaagtcgagtcagggtaaccgcagaag
gacggttgcctccatgtggtaatgtggtcatttgaagatgtcccagaaaa
tccaaacaatgaatctgcaccttcattgtgtgtgtttatatacctgtgta
tgtgtgttagtgagattcatatacatgcatatacgcacatatgcacacat
atacatgcatatgcacacatatgcacacatggaagcctgaggatgccaag
tgttctgatcaaccactcccaccccattcctttacggcaggggctctttc
taaatggggagatgggctggcagccgctaagccccagcaatccttctgtc
tccattccccacagtagtggaaccacagaggcactggtgtgtggcttttc
acatgggttctggggattagaacacagtccctcacacttgcaactgctct
tacccactgagccatccccacagtcctttggtttacatttcgcagaataa
atatgtatttgcctgtctgatagagaaaacatacttaaagatacagttca
gccagggagcaacataggtaaaggtaaagacataaaaatacacttgacgt
agagaaactatctcattcaacatggctgacacacagattgagagccaaag
aagtagctgcagcccaggctgttctgacacacacaagcagcactgcctca
tctgatgtcgtgctgctcatgaactctctgcaggatggctatgctctgca
gatcatcaaggcctggctgctttatctcatgtcattc
gaattctagtgcctcagaaggaaagagttcataaatagaacacaatgtac
attttctttcttttttttttggtagaaggccaatagagaaaaaaacccta
cttttttctcctaacatcggttcttaagtagttatgatcagtatcagtgc
tgacaagggatgttcagtgaccctggtgcagataaggacacataattgca
cacaatatttgtacaggacacacacaggtaggaaattctagatctgaccc
ctgatgacttctgcccccatttcttctttgctgttcagaatgctcatcct
ccctgacttgatttatcagtccttcttgacttgttcttcagcccctggcc
cctggcccctcagctgcacacgctcacatgggagggccagtgagctgcag
gagaaagaagcccagcacctttgaagagggccagttaacctcagcctgag
ctcctcagtgttaataaggctacaggagggaacagatgggagacacgagg
accaccaggggtgtggaataaccgttttcttcgccggtgctctgctctgc
attccttgcctggcctctgcaggactggaagccacagactgtcctgaggg
aagtttccggtgtgcagtcgactacactgggcagatgctgaaagctgata
aagcatttgcttcctagctgtgtgcacgtttccagaggacactggaaagt
ttgctggactgatggaagaccttcccttcagctagaagacctgctggacc
aaaacaccagagaatctctccttccctccctcggctactgcccactgaat
gggagggaggacactctcatttctgcccctcaggcatcagcagtcactct
ctgctttagagaaagcatagcacgccagattagtgagagtccctcgtaca
ggcgccagctctgtgctgatctagcagtgtcctgccccatttacagacgc
tgcaggtggtcttggtgtcgtcatatcgtccagctgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_135406140_135407151
seq2: B6Ng01-045J24.b_46_1032 (reverse)

seq1  GAATGACAATGGAGATAAAAGCAGCCAGGGGCCCTGATGATTCTGCAGAG  50
      ||||||||   ||||| ||||||||||  |||| |||||| |||||||||
seq2  GAATGACA--TGAGAT-AAAGCAGCCA--GGCCTTGATGA-TCTGCAGAG  44

seq1  CATAGGCCCCATCCCTGCAGAGAGGTTTTCATGAGGCAGGCACGACCATC  100
      |||||   |||| |||||||||||   ||||||| ||| |||||| ||||
seq2  CATAG---CCAT-CCTGCAGAGAG---TTCATGA-GCA-GCACGA-CATC  84

seq1  AGATGGAAGCAGTGCCTGCTTTGTGTGTGTCAGAAACAGCCTGGGCTGCA  150
      |||| || |||||| |||| ||||||||||||| ||||||||||||||||
seq2  AGAT-GAGGCAGTG-CTGC-TTGTGTGTGTCAG-AACAGCCTGGGCTGCA  130

seq1  GCCTAACTTCTTTGGCTCCTCAATCTGTGTGTCAGCCATGTTGAATGAGA  200
      ||   |||||||||||| ||||||||||||||||||||||||||||||||
seq2  GC--TACTTCTTTGGCT-CTCAATCTGTGTGTCAGCCATGTTGAATGAGA  177

seq1  TAGTTTTCTCTACGTCAAGTGTATTTTTATGTCTTTACCTTTACCTATGT  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAG-TTTCTCTACGTCAAGTGTATTTTTATGTCTTTACCTTTACCTATGT  226

seq1  TGCTCCCTGGCCTGAACTGTATCTTTAAGTATGTTTTCTCTATCAGACAG  300
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCTGG-CTGAACTGTATCTTTAAGTATGTTTTCTCTATCAGACAG  275

seq1  GCAAATACATATTTATTCTGCGAAATGTAAACCAAAGGACTGTGGGGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATACATATTTATTCTGCGAAATGTAAACCAAAGGACTGTGGGGATG  325

seq1  GCTCAGTGGGTAAGAGCAGTTGCAAGTGTGAGGGACTGTGTTCTAATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGGTAAGAGCAGTTGCAAGTGTGAGGGACTGTGTTCTAATCCC  375

seq1  CAGAACCCATGTGAAAAGCCACACACCAGTGCCTCTGTGGTTCCACTACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCCATGTGAAAAGCCACACACCAGTGCCTCTGTGGTTCCACTACT  425

seq1  GTGGGGAATGGAGACAGAAGGATTGCTGGGGCTTAGCGGCTGCCAGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGAATGGAGACAGAAGGATTGCTGGGGCTTAGCGGCTGCCAGCCCA  475

seq1  TCTCCCCATTTAGAAAGAGCCCCTGCCGTAAAGGAATGGGGTGGGAGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCATTTAGAAAGAGCCCCTGCCGTAAAGGAATGGGGTGGGAGTGG  525

seq1  TTGATCAGAACACTTGGCATCCTCAGGCTTCCATGTGTGCATATGTGTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAGAACACTTGGCATCCTCAGGCTTCCATGTGTGCATATGTGTGC  575

seq1  ATATGCATGTATATGTGTGCATATGTGCGTATATGCATGTATATGAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCATGTATATGTGTGCATATGTGCGTATATGCATGTATATGAATCT  625

seq1  CACTAACACACATACACAGGTATATAAACACACACAATGAAGGTGCAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACACACATACACAGGTATATAAACACACACAATGAAGGTGCAGAT  675

seq1  TCATTGTTTGGATTTTCTGGGACATCTTCAAATGACCACATTACCACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTTTGGATTTTCTGGGACATCTTCAAATGACCACATTACCACATG  725

seq1  GAGGCAACCGTCCTTCTGCGGTTACCCTGACTCGACTTAGTACTTGCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAACCGTCCTTCTGCGGTTACCCTGACTCGACTTAGTACTTGCCCA  775

seq1  CTGCAATAACAATTGTATCTATACTTTGTTGAATATCTGTTATGAGCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATAACAATTGTATCTATACTTTGTTGAATATCTGTTATGAGCCAT  825

seq1  ATACTTCAAATTTATCTTACATACCGTAGGTCACTCAGTTTTATGTTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTCAAATTTATCTTACATACCGTAGGTCACTCAGTTTTATGTTGAC  875

seq1  TCTATAGCGCATCTTAACCTCATGCCGTAGATGAGGGAATCCAGCTGTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGCGCATCTTAACCTCATGCCGTAGATGAGGGAATCCAGCTGTGG  925

seq1  AGAGAAGGCTAGATAGTTTTCCCTAGTTCATAATGTTACAGAGAACAGTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGCTAGATAGTTTTCCCTAGTTCATAATGTTACAGAGAACAGTA  975

seq1  GAGCATGAATTC  1012
      ||||||||||||
seq2  GAGCATGAATTC  987

seq1: chr3_135315926_135316950
seq2: B6Ng01-045J24.g_67_1054

seq1  GAATTCTAGTGCCTCAGAAGGAAAGAGTTCATAAATAGAACACAATGTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGTGCCTCAGAAGGAAAGAGTTCATAAATAGAACACAATGTAC  50

seq1  ATTTTCTTTCTTTTTTTTTTGGTAGAAGGCCAATAGAGAAAAAAACCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTCTTTTTTTTTTGGTAGAAGGCCAATAGAGAAAAAAACCCTA  100

seq1  CTTTTTTCTCCTAACATCGGTTCTTAAGTAGTTATGATCAGTATCAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTCCTAACATCGGTTCTTAAGTAGTTATGATCAGTATCAGTGC  150

seq1  TGACAAGGGATGTTCAGTGACCCTGGTGCAGATAAGGACACATAATTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGGGATGTTCAGTGACCCTGGTGCAGATAAGGACACATAATTGCA  200

seq1  CACAATATTTGTACAGGACACACACAGGTAGGAAATTCTAGATCTGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATATTTGTACAGGACACACACAGGTAGGAAATTCTAGATCTGACCC  250

seq1  CTGATGACTTCTGCCCCCATTTCTTCTTTGCTGTTCAGAATGCTCATCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGACTTCTGCCCCCATTTCTTCTTTGCTGTTCAGAATGCTCATCCT  300

seq1  CCCTGACTTGATTTATCAGTCCTTCTTGACTTGTTCTTCAGCCCCTGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTTGATTTATCAGTCCTTCTTGACTTGTTCTTCAGCCCCTGGCC  350

seq1  CCTGGCCCCTCAGCTGCACACGCTCACATGGGAGGGCCAGTGAGCTGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCCCCTCAGCTGCACACGCTCACATGGGAGGGCCAGTGAGCTGCAG  400

seq1  GAGAAAGAAGCCCAGCACCTTTGAAGAGGGCCAGTTAACCTCAGCCTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAAGCCCAGCACCTTTGAAGAGGGCCAGTTAACCTCAGCCTGAG  450

seq1  CTCCTCAGTGTTAATAAGGCTACAGGAGGGAACAGATGGGAGACACGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGTGTTAATAAGGCTACAGGAGGGAACAGATGGGAGACACGAGG  500

seq1  ACCACCAGGGGTGTGGAATAACCGTTTTCTTCGCCGGTGCTCTGCTCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAGGGGTGTGGAATAACCGTTTTCTTCGCCGGTGCTCTGCTCTGC  550

seq1  ATTCCTTGCCTGGCCTCTGCAGGACTGGAAGCCACAGACTGTCCTGAGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGCCTGGCCTCTGCAGGACTGGAAGCCACAGACTGTCCTGAGGG  600

seq1  AAGTTTCCGGTGTGCAGTCGACTACACTGGGCAGATGCTGAAAGCTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCCGGTGTGCAGTCGACTACACTGGGCAGATGCTGAAAGCTGATA  650

seq1  AAGCATTTGCTTCCTAGCTGTGTGCACGTTTCCAGAGGACACTGGAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTTGCTTCCTAGCTGTGTGCACGTTTCCAGAGGACACTGGAAAGT  700

seq1  TTGCTGGACTGATGGAAGACCTTCCCTTCAGCTAGAAGACCTGCTGGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGACTGATGGAAGACCTTCCCTTCAGCTAGAAGACCTGCTGGACC  750

seq1  AAAACACCAGAGAATCCTCTCCTTCCCTCCCTCCGGCTACTGCCCCACCT  800
      ||||||||||||||| |||||||||||||||| ||||||||||||   ||
seq2  AAAACACCAGAGAAT-CTCTCCTTCCCTCCCT-CGGCTACTGCCC--ACT  796

seq1  GAATGGGAGGGAGGACACTCTTCATTTCTTGCCCCTCCAGGGCATCAGCA  850
      |||||||||||||||||||| ||||||| ||||||||   ||||||||||
seq2  GAATGGGAGGGAGGACACTC-TCATTTC-TGCCCCTC--AGGCATCAGCA  842

seq1  GTCCAACCTCTCCTGCCTTTAGAGGAAAAGCATAGCCACGCCCAGATTTA  900
      |||    |||| ||| ||||||||  ||||||||| |||| ||||| |||
seq2  GTC---ACTCT-CTG-CTTTAGAG--AAAGCATAG-CACG-CCAGA-TTA  882

seq1  GTGAAGAGTCCCCTCGGTTACAGGGCGCCCAGGCTTCTGTGCTGGAATCC  950
      ||| ||||| ||||||  |||| |||| ||||   |||||||||  || |
seq2  GTG-AGAGT-CCCTCG--TACA-GGCG-CCAG--CTCTGTGCTG--AT-C  921

seq1  TAGCAGTGTCCCTGCGCACATTTTACAGACGCTGCAGAGTGGGTCTTGGT  1000
      ||||||||| ||||| | || |||||||||||||||| || |||||||||
seq2  TAGCAGTGT-CCTGC-CCCA-TTTACAGACGCTGCAG-GT-GGTCTTGGT  966

seq1  GTCGTTCATAATCGTCACAGCTGAG  1025
      |||| |||| |||||| ||||||||
seq2  GTCG-TCAT-ATCGTC-CAGCTGAG  988