BAC Information

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BAC

Clone NameB6Ng01-046K05
Chromosome3 (Build37)
Map Location 65,269,427 - 65,396,776
singlet/doubletdoublet
Overlap geneEG667093, LOC100041083, 4931440P22Rik, Tiparp
Upstream gene4930518C23Rik, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604
Downstream geneLOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046K05.bB6Ng01-046K05.g
ACCDH871738DH871739
length915925
definitionDH871738|Mus musculus domesticus DNA, BAC clone: B6Ng01-046K05, 5' end.DH871739|Mus musculus domesticus DNA, BAC clone: B6Ng01-046K05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,395,909 - 65,396,776)(65,269,427 - 65,270,349)
sequence
gaattctaattgttcagtgttagtgtgtagaaataccattgatttgtgtg
aattgactgtaccctgagactttattagacttatttatcagttctcagag
ctcttgtgtaggttgcttaagaatgtttatatagatagttatgttattta
tgatagttatgttattcatgtgtagagacatttattttttatattttgtc
caattataatgacatactagtatttccatggcaatagcagaacatatcct
tataatagtcaccacttgggagaagaaagtgttcagtcatttaacactgt
tttgtgtgaactcggtagggttttcttttttttttttttttttttatagg
cctctttttgtaggtcagataatatttacaaaataattacaaatgcatat
gaaatcttgtcaagtgtattttctgtacctatttttattattactattac
tgtagtttgatacagggtcttctgtagcccaggttggctttgaactctgt
ttgagaagattgcttagaacacctgatctttctactacggtggtgcccag
actgtagccttaaatctgccaacatcctgctgtacttcgatggtcttcta
aaggtgatcagcttgtccactgcttacatcattgtcacgtggtcatgctg
tgttatactttctagttttatacaatctgtattcaattaagctaatgttt
tagggaggatttttcctatcctaaatattcatggggatattgtctgtagt
ttcttttcttgtgtttttgttggcttgattaaaaaaaaaacaacaacaaa
aaacaaaaacaaatactggcttcaagatcccagcattcagaaggcaggaa
agagaattgtgactttggggccagtctaggctatgaagaaatcccattgg
agggtacggtggggt
gaattcaaatacgttgcactttttttttaattggatattttatttgttta
catttcaaatgttatcccctttccctgtttcttctctgcaaaccccctat
cccatccccccttaccctgcttctatgagggtgctcacccacacacccac
tcctgcctcaccaccctagcattcctctacactggggccccttcagctcc
ttcagtccttcccctaactcctccacaggggtccctgtgctcagtccaat
ggttggctatgagcacccgcatctgtattggtcaggatctggcagagcct
atgaggagacaaatatattgctcttttcatcatacaatttttaggttgga
aagtttttttttgtctaatggcaaatcagaagaaaattcagttatatttt
agagaatataacttgggggctcttgtaagcagatgcttgcttctcctcag
gttcatgctaaatcaaaggggaagccactacagaactaagttcagagtaa
tacagtcaggcttaccttttaaataaggatggagtaaaaactatcacagt
ggtacattgatatccaaactgttggaaatgttggtttatctgggtgtggc
caacatccaggctctgaaaactcctgaaatgatatatttttcttttaata
gagatcctttcttgagtttttctagaaattctaaattcatctctctctct
ctctttctgcctctctctttctcagtctcaatgcacataatccagaatcg
attcactaatgtccctcgagctcactctgcagccaaggatgagtttgaac
ttctgatgctcttgccttctacttctggagtggtggggtaacaaagcaag
tgtcagcacttgggtaagcactccactgactagagtctcacagcccatcc
ttgactttttttttttaatattatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65395909_65396776
seq2: B6Ng01-046K05.b_100_959 (reverse)

seq1  ACCCCACCCTACCCTCCAATGGGATTTCTTCATAGCCTAGACTGGCCCCA  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCGTACCCTCCAATGGGATTTCTTCATAGCCTAGACTGGCCCCA  50

seq1  AAGTCACAATTCTTCTTTTCCTGCCTTCTGAATGCTGGGATTCTTGAAGC  100
      |||||||||||||   |||||||||||||||||||||||| |||||||||
seq2  AAGTCACAATTCT--CTTTCCTGCCTTCTGAATGCTGGGA-TCTTGAAGC  97

seq1  CAGTATTTGTTTTTGTTTTTTGTTGTTGTTTTTTTTTTAATCAAAGCCAA  150
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  CAGTATTTGTTTTTGTTTTTTGTTGTTGTTTTTTTTTTAATC-AAGCC-A  145

seq1  ACAAAAACACAAGAAAAGAAAACTACAGACAAATATCCCCCATGAATATT  200
      |||||||||||||||||| ||||||||||| ||||| |||||||||||||
seq2  ACAAAAACACAAGAAAAG-AAACTACAGAC-AATAT-CCCCATGAATATT  192

seq1  TAGGATAGGAAAAATCCTCCCTAAAACATTAGCTTAATTGAATACAGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATAGGAAAAATCCTCCCTAAAACATTAGCTTAATTGAATACAGATT  242

seq1  GTATAAAACTAGAAAGTATAACACAGCATGACCACGTGACAATGATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAAACTAGAAAGTATAACACAGCATGACCACGTGACAATGATGTAA  292

seq1  GCAGTGGACAAGCTGATCACCTTTAGAAGACCATCGAAGTACAGCAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGACAAGCTGATCACCTTTAGAAGACCATCGAAGTACAGCAGGAT  342

seq1  GTTGGCAGATTTAAGGCTACAGTCTGGGCACCACCGTAGTAGAAAGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAGATTTAAGGCTACAGTCTGGGCACCACCGTAGTAGAAAGATCA  392

seq1  GGTGTTCTAAGCAATCTTCTCAAACAGAGTTCAAAGCCAACCTGGGCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCTAAGCAATCTTCTCAAACAGAGTTCAAAGCCAACCTGGGCTAC  442

seq1  AGAAGACCCTGTATCAAACTACAGTAATAGTAATAATAAAAATAGGTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACCCTGTATCAAACTACAGTAATAGTAATAATAAAAATAGGTACA  492

seq1  GAAAATACACTTGACAAGATTTCATATGCATTTGTAATTATTTTGTAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACACTTGACAAGATTTCATATGCATTTGTAATTATTTTGTAAAT  542

seq1  ATTATCTGACCTACAAAAAGAGGCCTATAAAAAAAAAAAAAAAAAAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTGACCTACAAAAAGAGGCCTATAAAAAAAAAAAAAAAAAAAAGA  592

seq1  AAACCCTACCGAGTTCACACAAAACAGTGTTAAATGACTGAACACTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTACCGAGTTCACACAAAACAGTGTTAAATGACTGAACACTTTCT  642

seq1  TCTCCCAAGTGGTGACTATTATAAGGATATGTTCTGCTATTGCCATGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCAAGTGGTGACTATTATAAGGATATGTTCTGCTATTGCCATGGAA  692

seq1  ATACTAGTATGTCATTATAATTGGACAAAATATAAAAAATAAATGTCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGTATGTCATTATAATTGGACAAAATATAAAAAATAAATGTCTCT  742

seq1  ACACATGAATAACATAACTATCATAAATAACATAACTATCTATATAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGAATAACATAACTATCATAAATAACATAACTATCTATATAAACA  792

seq1  TTCTTAAGCAACCTACACAAGAGCTCTGAGAACTGATAAATAAGTCTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAGCAACCTACACAAGAGCTCTGAGAACTGATAAATAAGTCTAAT  842

seq1  AAAGTCTCAGGGTACAGT  868
      ||||||||||||||||||
seq2  AAAGTCTCAGGGTACAGT  860

seq1: chr3_65269427_65270349
seq2: B6Ng01-046K05.g_68_992

seq1  GAATTCAAATACGTTGCACTTTTTTTTTAATTGGATATTTTATTTGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATACGTTGCACTTTTTTTTTAATTGGATATTTTATTTGTTTA  50

seq1  CATTTCAAATGTTATCCCCTTTCCCTGTTTCTTCTCTGCAAACCCCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCAAATGTTATCCCCTTTCCCTGTTTCTTCTCTGCAAACCCCCTAT  100

seq1  CCCATCCCCCCTTACCCTGCTTCTATGAGGGTGCTCACCCACACACCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCCCCCTTACCCTGCTTCTATGAGGGTGCTCACCCACACACCCAC  150

seq1  TCCTGCCTCACCACCCTAGCATTCCTCTACACTGGGGCCCCTTCAGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTCACCACCCTAGCATTCCTCTACACTGGGGCCCCTTCAGCTCC  200

seq1  TTCAGTCCTTCCCCTAACTCCTCCACAGGGGTCCCTGTGCTCAGTCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTCCTTCCCCTAACTCCTCCACAGGGGTCCCTGTGCTCAGTCCAAT  250

seq1  GGTTGGCTATGAGCACCCGCATCTGTATTGGTCAGGATCTGGCAGAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGCTATGAGCACCCGCATCTGTATTGGTCAGGATCTGGCAGAGCCT  300

seq1  ATGAGGAGACAAATATATTGCTCTTTTCATCATACAATTTTTAGGTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAGACAAATATATTGCTCTTTTCATCATACAATTTTTAGGTTGGA  350

seq1  AAGTTTTTTTTTGTCTAATGGCAAATCAGAAGAAAATTCAGTTATATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTTTTTGTCTAATGGCAAATCAGAAGAAAATTCAGTTATATTTT  400

seq1  AGAGAATATAACTTGGGGGCTCTTGTAAGCAGATGCTTGCTTCTCCTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATATAACTTGGGGGCTCTTGTAAGCAGATGCTTGCTTCTCCTCAG  450

seq1  GTTCATGCTAAATCAAAGGGGAAGCCACTACAGAACTAAGTTCAGAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGCTAAATCAAAGGGGAAGCCACTACAGAACTAAGTTCAGAGTAA  500

seq1  TACAGTCAGGCTTACCTTTTAAATAAGGATGGAGTAAAAACTATCACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCAGGCTTACCTTTTAAATAAGGATGGAGTAAAAACTATCACAGT  550

seq1  GGTACATTGATATCCAAACTGTTGGAAATGTTGGTTTATCTGGGTGTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATTGATATCCAAACTGTTGGAAATGTTGGTTTATCTGGGTGTGGC  600

seq1  CAACATCCAGGCTCTGAAAACTCCTGAAATGATATATTTTTCTTTTAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATCCAGGCTCTGAAAACTCCTGAAATGATATATTTTTCTTTTAATA  650

seq1  GAGATCCTTTCTTGAGTTTTTCTAGAAATTCTAAATTCATCTCTCTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTTTCTTGAGTTTTTCTAGAAATTCTAAATTCATCTCTCTCTCT  700

seq1  CTCTTTCTGCCTCTCTCTTTCTCAGTCTCAATGCACATAATCCAGAATCG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTGCCTCTCTCTTTCTCAGTCTCAATGCACATAATCCAGAATCG  750

seq1  ATTCACTAATGT-CCTCGAGCTCACTCTGCAGCCAAGGATGAGTTTGAAC  799
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTCACTAATGTCCCTCGAGCTCACTCTGCAGCCAAGGATGAGTTTGAAC  800

seq1  TTCTGATGCTCTTGCC-TCTACTTCTGGAGTGGTGGGGTAAC-AAGCAAG  847
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  TTCTGATGCTCTTGCCTTCTACTTCTGGAGTGGTGGGGTAACAAAGCAAG  850

seq1  TGTCAGCACTTGGGTAAGCACTCCAACTGACCTAGAGTCTCACAGCCCAT  897
      |||||||||||||||||||||||| ||||| |||||||||||||||||||
seq2  TGTCAGCACTTGGGTAAGCACTCC-ACTGA-CTAGAGTCTCACAGCCCAT  898

seq1  CCTTGACTTTTTTTTTTTTA-ATTATT  923
      |||||||||||||||||| | ||||||
seq2  CCTTGACTTTTTTTTTTTAATATTATT  925