BAC Information

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BAC

Clone NameB6Ng01-046L22
Chromosome3 (Build37)
Map Location 82,475,974 - 82,593,374
singlet/doubletdoublet
Overlap geneLOC100041940
Upstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r
Downstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046L22.bB6Ng01-046L22.g
ACCDH871814DH871815
length1,0461,083
definitionDH871814|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L22, 5' end.DH871815|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,475,974 - 82,477,023)(82,592,273 - 82,593,374)
sequence
gaattcctgataaggagacatggtaaacccagtctctttctagagggtca
gaggatgagtagctgtggttcttggagatggcatcaaaggtggcactggc
aatgttgcccaggatgcagcccttggctaatgagtagcagtcatcagtac
tggccagcagccactgcttcttgggcacaggggcagagacagatgctagt
gcctctgggtgcaggggtgagatgcaccaggacagccaccgcagcctgtc
accttgcctggggcttattcccccagcagcccctccgcacagggatgatg
gaaagcttgacccaccaagatgatggaccctcggatggcagcagctacct
acttggagcacctaacaccaaaaccaacatgacctttgcagtccccaata
gagacaaaacctttgcagtccccaatagagacaagaacctggtcttctgg
ccagcccaaatctacatctgcactggcatgatctttagaacctcattgtt
cagggttgtgcccataacatcatgcccctaagatcatgaactaaataact
aactctttctaacttaagagataaataatcaagactaaaacaaataaact
tgaatattaaagtaagttccatatagatagtgaaatataacagatataat
ttaggcttgagtaagaatttttaatttagtctatgtctaggttgtcatca
ctttttcttctcttgtggtctccattttaattccatcacacacacacatg
tatgcactcacacctatgtgtgtgtgtaaatatatagtgtatgtacatgt
acactccacatataatagagaacatgtactattgttttttacaaggtctc
tgttatctcacctaatgttatctcacttaatgatggtatttccatatcca
tccattttctcacaaatttcatgattttattcattttatgactgaataaa
atttcattttatgtatagaatgtatttttgtttccaatcatttgttataa
atatataatgtgttgtgttcctggtcttggactagtgggctaacaa
gaattcatatagtgcagttataaagtaaaacagaaataggagacaggctg
attgacatctgtgagactccatgttttgattgcagtgaccaaagagagct
atgagctatctttccagggagccacacaccatgagactgggttccagcct
actcaatttggccaaagacaagatctggggattgaaaccatttgaattca
atacaaggggcaaaactgcattgcacatatgttggtgttgttgacttaac
aaaacaagtctagactttgaaagattagggatagtacagtgttcaattct
gagttagaggtggaatggaaacaatgatatttaagctaataatttgagtt
taggtttttaacagtattgttggctcatggacaccactcattgcacgaat
gacaaagattgcacatttgtctatgctctcatactgtatgatcctgttct
ctgtagtttatatttaggaaagtagccatatccttatgaacccaaaaact
ccaaggtgagttctctttgtaatagggcaactacctttataaatagcaaa
agagcaggtcttagttgtagaaagagaaagacagaaaatgagaatgtcag
ttacaaagttttacttttcaaatgcattttcagatttgatatagaaaaaa
tagccaactatatttttctgcattactggcttttgataatgcattttctc
ttggaagaataagttataatagagatggaaactgaaagtgattttttttc
aagtttaaattaaacatggtagcagaacaaaatgaaaaagagaaacgtca
atcttcaagtatacctaggttagtctggcaatattatctgatctccttaa
ttcaatccagattgtggtgaggggactgaggtatatgccagtgtccaagt
gctggtctggcacaaacagggccctgggttcagcccagcaaagattgatc
tgacagtataggaaagctgagttggagtggttgtcatcttatttcaaagc
agcttggagcacttctgatttcctacgatctcaggcttctgcctccctac
acattccacaagccacgtctgcctatggggaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82475974_82477023
seq2: B6Ng01-046L22.b_42_1087

seq1  GAATTCCTGATAAGGAGACATGGTAAACCCAGTCTCTTTCTAGAGGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATAAGGAGACATGGTAAACCCAGTCTCTTTCTAGAGGGTCA  50

seq1  GAGGATGAGTAGCTGTGGTTCTTGGAGATGGCATCAAAGGTGGCACTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGATGAGTAGCTGTGGTTCTTGGAGATGGCATCAAAGGTGGCACTGGC  100

seq1  AATGTTGCCCAGGATGCAGCCCTTGGCTAATGAGTAGCAGTCATCAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGCCCAGGATGCAGCCCTTGGCTAATGAGTAGCAGTCATCAGTAC  150

seq1  TGGCCAGCAGCCACTGCTTCTTGGGCACAGGGGCAGAGACAGATGCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCAGCCACTGCTTCTTGGGCACAGGGGCAGAGACAGATGCTAGT  200

seq1  GCCTCTGGGTGCAGGGGTGAGATGCACCAGGACAGCCACCGCAGCCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGGGTGCAGGGGTGAGATGCACCAGGACAGCCACCGCAGCCTGTC  250

seq1  ACCTTGCCTGGGGCTTATTCCCCCAGCAGCCCCTCCGCACAGGGATGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGCCTGGGGCTTATTCCCCCAGCAGCCCCTCCGCACAGGGATGATG  300

seq1  GAAAGCTTGACCCACCAAGATGATGGACCCTCGGATGGCAGCAGCTACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCTTGACCCACCAAGATGATGGACCCTCGGATGGCAGCAGCTACCT  350

seq1  ACTTGGAGCACCTAACACCAAAACCAACATGACCTTTGCAGTCCCCAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGCACCTAACACCAAAACCAACATGACCTTTGCAGTCCCCAATA  400

seq1  GAGACAAAACCTTTGCAGTCCCCAATAGAGACAAGAACCTGGTCTTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAAACCTTTGCAGTCCCCAATAGAGACAAGAACCTGGTCTTCTGG  450

seq1  CCAGCCCAAATCTACATCTGCACTGGCATGATCTTTAGAACCTCATTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCAAATCTACATCTGCACTGGCATGATCTTTAGAACCTCATTGTT  500

seq1  CAGGGTTGTGCCCATAACATCATGCCCCTAAGATCATGAACTAAATAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTGTGCCCATAACATCATGCCCCTAAGATCATGAACTAAATAACT  550

seq1  AACTCTTTCTAACTTAAGAGATAAATAATCAAGACTAAAACAAATAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTTCTAACTTAAGAGATAAATAATCAAGACTAAAACAAATAAACT  600

seq1  TGAATATTAAAGTAAGTTCCATATAGATAGTGAAATATAACAGATATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTAAAGTAAGTTCCATATAGATAGTGAAATATAACAGATATAAT  650

seq1  TTAGGCTTGAGTAAGAATTTTTAATTTAGTCTATGTCTAGGTTGTCATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTTGAGTAAGAATTTTTAATTTAGTCTATGTCTAGGTTGTCATCA  700

seq1  CTTTTTCTTCTCTTGTGGTCTCCATTTTAATTCCATCACACACACACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTCTCTTGTGGTCTCCATTTTAATTCCATCACACACACACATG  750

seq1  TATGCACTCACACCTATGTGTGTGTGTAAATATATAGTGTATGTACATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACTCACACCTATGTGTGTGTGTAAATATATAGTGTATGTACATGT  800

seq1  ACACTCCACATATAATAGAGAACATGTACTATTGTTTTTTACAAGGTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCCACATATAATAGAGAACATGTACTATTGTTTTTTACAAGGTCTC  850

seq1  TGTTATCTCACCTAATGTTATCTCACTTAATGATGGTATTTCCATATCCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTCACCTAATGTTATCTCACTTAATGATGGTATTTCCATATCCA  900

seq1  TCCATTTTCTCACAAATTTCATGATTTTATTCATTTTATGACTGAATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTCTCACAAATTTCATGATTTTATTCATTTTATGACTGAATAAA  950

seq1  ATTTCATTTTATGTATAGAATGTATTTTTGTTTCCAATCATTTGTTAATA  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATTTCATTTTATGTATAGAATGTATTTTTGTTTCCAATCATTTGTT-ATA  999

seq1  AATATATAATGTGGTTGTGTTCCTTGGTCTTGGGACTAGTGGGCTAACAA  1050
      |||||||||||| |||||||||| ||||||| ||||||||||||||||||
seq2  AATATATAATGT-GTTGTGTTCC-TGGTCTT-GGACTAGTGGGCTAACAA  1046

seq1: chr3_82592273_82593374
seq2: B6Ng01-046L22.g_66_1148 (reverse)

seq1  TTTCCCCACTAGGGCAGACGTGGCTTGTGG-ATGTGGTTGAGGAGGGCAG  49
      |||||||| || |||||||||||||||||| |||||    |||  |||||
seq2  TTTCCCCA-TA-GGCAGACGTGGCTTGTGGAATGTG---TAGGGAGGCAG  45

seq1  AAGGCCCTGAGGGTCGTGAGAGAATCAGGAGTGGCTCCAAGCTGGCTTTG  99
      |||  ||||| | |||| ||  |||||| ||| |||||||||| ||||| 
seq2  AAG--CCTGA-GATCGT-AGGAAATCAGAAGT-GCTCCAAGCT-GCTTT-  88

seq1  GAAATAAGATGACAACCACTCCAACCTCAGCTTGTCCCTTATACTGTCAG  149
      |||||||||||||||||||||||| |||||||| |||  |||||||||||
seq2  GAAATAAGATGACAACCACTCCAA-CTCAGCTT-TCC--TATACTGTCAG  134

seq1  ATCAATCTTTTGCTGGGCTGGAACCCAGGGCCCTGTTTGTGCCAGACCAG  199
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  ATCAATC-TTTGCTGGGCT-GAACCCAGGGCCCTGTTTGTGCCAGACCAG  182

seq1  CACTTTGGACACTGGCATATACCTCAGTCCCCCTCACCACAATCTGGATT  249
      ||| |||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAC-TTGGACACTGGCATATACCTCAGT-CCCCTCACCACAATCTGGATT  230

seq1  GAATTAAGGAGATCAGATAATATTGCCAGACTAACCTAGGTATACTTGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTAAGGAGATCAGATAATATTGCCAGACTAACCTAGGTATACTTGAA  280

seq1  GATTGACGTTTCTCTTTTTCATTTTGTTCTGCTACCATGTTTAATTTAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACGTTTCTCTTTTTCATTTTGTTCTGCTACCATGTTTAATTTAAA  330

seq1  CTTGAAAAAAAATCACTTTCAGTTTCCATCTCTATTATAACTTATTCTTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAAAAAATCACTTTCAGTTTCCATCTCTATTATAACTTATTCTTC  380

seq1  CAAGAGAAAATGCATTATCAAAAGCCAGTAATGCAGAAAAATATAGTTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAAAATGCATTATCAAAAGCCAGTAATGCAGAAAAATATAGTTGG  430

seq1  CTATTTTTTCTATATCAAATCTGAAAATGCATTTGAAAAGTAAAACTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTTTCTATATCAAATCTGAAAATGCATTTGAAAAGTAAAACTTTG  480

seq1  TAACTGACATTCTCATTTTCTGTCTTTCTCTTTCTACAACTAAGACCTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGACATTCTCATTTTCTGTCTTTCTCTTTCTACAACTAAGACCTGC  530

seq1  TCTTTTGCTATTTATAAAGGTAGTTGCCCTATTACAAAGAGAACTCACCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGCTATTTATAAAGGTAGTTGCCCTATTACAAAGAGAACTCACCT  580

seq1  TGGAGTTTTTGGGTTCATAAGGATATGGCTACTTTCCTAAATATAAACTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTTTTGGGTTCATAAGGATATGGCTACTTTCCTAAATATAAACTA  630

seq1  CAGAGAACAGGATCATACAGTATGAGAGCATAGACAAATGTGCAATCTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAACAGGATCATACAGTATGAGAGCATAGACAAATGTGCAATCTTT  680

seq1  GTCATTCGTGCAATGAGTGGTGTCCATGAGCCAACAATACTGTTAAAAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTCGTGCAATGAGTGGTGTCCATGAGCCAACAATACTGTTAAAAAC  730

seq1  CTAAACTCAAATTATTAGCTTAAATATCATTGTTTCCATTCCACCTCTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACTCAAATTATTAGCTTAAATATCATTGTTTCCATTCCACCTCTAA  780

seq1  CTCAGAATTGAACACTGTACTATCCCTAATCTTTCAAAGTCTAGACTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAATTGAACACTGTACTATCCCTAATCTTTCAAAGTCTAGACTTGT  830

seq1  TTTGTTAAGTCAACAACACCAACATATGTGCAATGCAGTTTTGCCCCTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAAGTCAACAACACCAACATATGTGCAATGCAGTTTTGCCCCTTG  880

seq1  TATTGAATTCAAATGGTTTCAATCCCCAGATCTTGTCTTTGGCCAAATTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAATTCAAATGGTTTCAATCCCCAGATCTTGTCTTTGGCCAAATTG  930

seq1  AGTAGGCTGGAACCCAGTCTCATGGTGTGTGGCTCCCTGGAAAGATAGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCTGGAACCCAGTCTCATGGTGTGTGGCTCCCTGGAAAGATAGCT  980

seq1  CATAGCTCTCTTTGGTCACTGCAATCAAAACATGGAGTCTCACAGATGTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTCTCTTTGGTCACTGCAATCAAAACATGGAGTCTCACAGATGTC  1030

seq1  AATCAGCCTGTCTCCTATTTCTGTTTTACTTTATAACTGCACTATATGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCCTGTCTCCTATTTCTGTTTTACTTTATAACTGCACTATATGAA  1080

seq1  TTC  1102
      |||
seq2  TTC  1083