BAC Information

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BAC

Clone NameB6Ng01-046N10
Chromosome3 (Build37)
Map Location 144,855,866 - 144,985,279
singlet/doubletdoublet
Overlap geneCol24a1
Upstream geneLmo4, LOC545572, Hs2st1, Sep15, LOC435761, Sh3glb1, LOC668890, Clca1, Clca2, Clca4, EG622139, AI747448, Clca6, Clca3, Clca5, Odf2l
Downstream gene2410019A14Rik, Cyr61, Ddah1, LOC100040331, Bcl10, 2410004B18Rik, Syde2, Wdr63, Mcoln3, Mcoln2, Edg7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046N10.bB6Ng01-046N10.g
ACCDH871881DH871882
length988640
definitionDH871881|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N10, 5' end.DH871882|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,855,866 - 144,856,628)(144,984,640 - 144,985,279)
sequence
gaattcacatccatgatggtaggaatttgacctgatcaacatgccactca
agagctggctgacggctccaagcagtatccatctgggcagccagcattgg
tctgtgctgccaagcagagtaagtaagaacttagcacaggctgcgtgagg
ggaagtcagttgctaagcctgcgcataaccaccatcctcactaccaacag
gttctgatttcattggtcaaagacaggggtagaagtggaaggaaagtaac
aagtgctcatgtatcagggaactctttcatgtccctctctggcgatgtca
tcctcagcgggcatccatagaggaaataaacgttctcattctaaacatgt
tttcgggtggatattttggcttggtcagagatcgaacaatcagcatacct
tttcctcagatttcttcattgccaaattgctacgatactccttccaagac
ctgatcatctgattaagccgtggacacagcctgtattttagaatacaatc
agacatctggccattttcttctcaagcaaaggatgttaagtggatgtgtt
gcccaaacagctgcctgggaggatctctcttcaagattgttttgctggga
tgtccctgaagggactgtaatgctgcagctgtccactcttgggtggtttg
agcatatcagatataacacctgtgagggagaacaggctcttctcttcccc
tgtctgtgaatcataaagagcttctcctgagcggtgagaagatgcatgga
attcttttagtaaaagttttctattgtgttctcacttttatagtcatagc
catacctaatattcttggttacttacatatttagacacactgggccctct
gtgtggaaaagcataaaagtaggatttttcttctactttgtcatcagctt
tagagttgacttagttttgtgaagtataataatggtgtattgaagatgtc
atttaataacagttgttttattcagctcatggctcttc
gaattcagtgatgacattgaagatatgtctaataggaataaaactaagga
gaaaatactacagtccatggcgttgtaatcttaagaaagtaaaggagaca
gagattaatgaatgaatggttgctgtagactccagggtaatgggtttaat
cctatttcacaaacacagcagtgcagccatgagccaacacaatggcttta
ggagaaacttgtaccaattaaagtgtgggatttttttttcaaagagaaat
gatgtgttggttgtggacagacaggattaaatttagggagagagaatttg
caaagctgccactttcctggtagagaactgaccagaggacatgaagttag
gaatgcacctgaaataagtagtctcatgaagcagaccgtcctctccttac
agggggcaggttgggcaaatagggggccctgggcactagagaagaccatg
tatcctgagtcaccttactgggattaacagcctcagggtgaagaggggat
ggaatcagcacagagaagactgcaacagaaacaatggttccaatgtctcc
tcacagaaggtggagggatgatgtgacaggctgatgtgctggagggcagg
gtataggcaaagactggaggggaagagggaggggatgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_144855866_144856628
seq2: B6Ng01-046N10.b_276_1032

seq1  GAAGTGGAAGGAAAGTAACAAGTGCTCATGTATCAGGGAACTCTTTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGGAAGGAAAGTAACAAGTGCTCATGTATCAGGGAACTCTTTCATG  50

seq1  TCCCTCTCTGGCGATGTCATCCTCAGCGGGCATCCATAGAGGAAATAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTCTGGCGATGTCATCCTCAGCGGGCATCCATAGAGGAAATAAAC  100

seq1  GTTCTCATTCTAAACATGTTTTCGGGTGGATATTTTGGCTTGGTCAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCATTCTAAACATGTTTTCGGGTGGATATTTTGGCTTGGTCAGAGA  150

seq1  TCGAACAATCAGCATACCTTTTCCTCAGATTTCTTCATTGCCAAATTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACAATCAGCATACCTTTTCCTCAGATTTCTTCATTGCCAAATTGCT  200

seq1  ACGATACTCCTTCCAAGACCTGATCATCTGATTAAGCCGTGGACACAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGATACTCCTTCCAAGACCTGATCATCTGATTAAGCCGTGGACACAGCC  250

seq1  TGTATTTTAGAATACAATCAGACATCTGGCCATTTTCTTCTCAAGCAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTAGAATACAATCAGACATCTGGCCATTTTCTTCTCAAGCAAAG  300

seq1  GATGTTAAGTGGATGTGTTGCCCAAACAGCTGCCTGGGAGGATCTCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAAGTGGATGTGTTGCCCAAACAGCTGCCTGGGAGGATCTCTCTT  350

seq1  CAAGATTGTTTTGCTGGGATGTCCCTGAAGGGACTGTAATGCTGCAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTGTTTTGCTGGGATGTCCCTGAAGGGACTGTAATGCTGCAGCTG  400

seq1  TCCACTCTTGGGTGGTTTGAGCATATCAGATATAACACCTGTGAGGGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCTTGGGTGGTTTGAGCATATCAGATATAACACCTGTGAGGGAGA  450

seq1  ACAGGCTCTTCTCTTCCCCTGTCTGTGAATCATAAAGAGCTTCTCCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTCTTCTCTTCCCCTGTCTGTGAATCATAAAGAGCTTCTCCTGAG  500

seq1  CGGTGAGAAGATGCATGGAATTCTTTTAGTAAAAGTTTTCTATTGTGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAGAAGATGCATGGAATTCTTTTAGTAAAAGTTTTCTATTGTGTTC  550

seq1  TCACTTTTATAGTCATAGCCATACCTAATATTCTTGGTTACTTACATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTTATAGTCATAGCCATACCTAATATTCTTGGTTACTTACATATT  600

seq1  TAGACACACTGGGCCCTCTGTGTGGAAAAGCATAAAAGTAGGATTTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACACTGGGCCCTCTGTGTGGAAAAGCATAAAAGTAGGATTTTTCT  650

seq1  TCTACTTTGTCATCAGCTTTAGAGTTGACTTAGGTTTTGTGAAGTATTAA  700
      |||||||||||||||||||||||||||||||| ||||||||||||| |||
seq2  TCTACTTTGTCATCAGCTTTAGAGTTGACTTA-GTTTTGTGAAGTA-TAA  698

seq1  TAATGGTGTTATTGAAGATGTCATTTTAAATAACAG-TGTTTTATTCCAG  749
      |||||||| |||||||||||||||||  |||||||| ||||||||| |||
seq2  TAATGGTG-TATTGAAGATGTCATTT--AATAACAGTTGTTTTATT-CAG  744

seq1  CTCCATGGCTCTTC  763
      || |||||||||||
seq2  CT-CATGGCTCTTC  757

seq1: chr3_144984640_144985279
seq2: B6Ng01-046N10.g_67_706 (reverse)

seq1  CCTCATCCCCTCCCTCTTCCCCTCCAGTCTTTGCCTATACCCTGCCCTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCCCTCCCTCTTCCCCTCCAGTCTTTGCCTATACCCTGCCCTCC  50

seq1  AGCACATCAGCCTGTCACATCATCCCTCCACCTTCTGTGAGGAGACATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATCAGCCTGTCACATCATCCCTCCACCTTCTGTGAGGAGACATTG  100

seq1  GAACCATTGTTTCTGTTGCAGTCTTCTCTGTGCTGATTCCATCCCCTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATTGTTTCTGTTGCAGTCTTCTCTGTGCTGATTCCATCCCCTCTT  150

seq1  CACCCTGAGGCTGTTAATCCCAGTAAGGTGACTCAGGATACATGGTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGAGGCTGTTAATCCCAGTAAGGTGACTCAGGATACATGGTCTTC  200

seq1  TCTAGTGCCCAGGGCCCCCTATTTGCCCAACCTGCCCCCTGTAAGGAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGCCCAGGGCCCCCTATTTGCCCAACCTGCCCCCTGTAAGGAGAG  250

seq1  GACGGTCTGCTTCATGAGACTACTTATTTCAGGTGCATTCCTAACTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGTCTGCTTCATGAGACTACTTATTTCAGGTGCATTCCTAACTTCAT  300

seq1  GTCCTCTGGTCAGTTCTCTACCAGGAAAGTGGCAGCTTTGCAAATTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCTGGTCAGTTCTCTACCAGGAAAGTGGCAGCTTTGCAAATTCTCT  350

seq1  CTCCCTAAATTTAATCCTGTCTGTCCACAACCAACACATCATTTCTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTAAATTTAATCCTGTCTGTCCACAACCAACACATCATTTCTCTTT  400

seq1  GAAAAAAAAATCCCACACTTTAATTGGTACAAGTTTCTCCTAAAGCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAATCCCACACTTTAATTGGTACAAGTTTCTCCTAAAGCCATT  450

seq1  GTGTTGGCTCATGGCTGCACTGCTGTGTTTGTGAAATAGGATTAAACCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGGCTCATGGCTGCACTGCTGTGTTTGTGAAATAGGATTAAACCCA  500

seq1  TTACCCTGGAGTCTACAGCAACCATTCATTCATTAATCTCTGTCTCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCTGGAGTCTACAGCAACCATTCATTCATTAATCTCTGTCTCCTTT  550

seq1  ACTTTCTTAAGATTACAACGCCATGGACTGTAGTATTTTCTCCTTAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTAAGATTACAACGCCATGGACTGTAGTATTTTCTCCTTAGTTT  600

seq1  TATTCCTATTAGACATATCTTCAATGTCATCACTGAATTC  640
      ||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTATTAGACATATCTTCAATGTCATCACTGAATTC  640