BAC Information

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BAC

Clone NameB6Ng01-047C01
Chromosome3 (Build37)
Map Location 146,644,620 - 146,686,532
singlet/doubletdoublet
Overlap genenone
Upstream geneSyde2, Wdr63, Mcoln3, Mcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
Downstream genePpia-ps3_1528.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047C01.bB6Ng01-047C01.g
ACCDH872074DH872075
length992725
definitionDH872074|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C01, 5' end.DH872075|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,644,620 - 146,645,623)(146,685,812 - 146,686,532)
sequence
gaattctcaccctagaaacacacattaaaagctaagagtaaatggaaata
gaaagactgccaagcatttgtgaaaggccattatttccttatctatccaa
gcaaggccttgttttgagcactggaatttcattgcctacattttcctgtt
gggacaagttgggtagggtgaagtggtgcaggaagctgtgtgctcattat
ttatgtgcattacctggggtgctgtggactgtggttgtcatagcaccatc
ccctaatgagcagccacgggaagacatgataatgaaccgtggaagtctca
ggaggccacagacaggtagtaggggtatagaatattccttagcttttatc
aatttcttatgcttatgcttaaaacacatctgcagcagagacagtgtaaa
tctttaatagaagagaaggaaaattccagaagctagttaatttcaccagg
gtgtttgtttgtttgtttgtttgtttgtttgtttgtttttccttagaatg
gattttggtttacctacaaggaaaggaatgagtatagacctgcagtatag
atggctgtttggttcatggccaggtagaaatgcttccccaaactaagata
cagatgtcaccccaattgtctaagtagtaacttgcttgttagtttgtcct
cacccacaaacagaatctaaaggaacagtttagttttcactcgagtaagc
cagcctttgaaggtttgaatctggtaaaagaccctgttgcaatatgagta
ttaagttgtatatggagcacagggaagcaacttcgttgtctgtaaatgct
agggtttgcctagattagatgaagttttttgtacttgtctctaaagttca
aacaaacaaaaccaaagccttttctttcactgctatttatgcatacatag
agaaaagtgcctcccagacatcaggaaaatgatttcttcgaatctctcgt
agcttgatagtaatgagactgggatctagcgatggaattgta
gaattctttacctagtgaggatcattggcatacatggtgatgatattggt
tcaccctttaatggaagtcctcctagttgtaaagaggaggcccctgtgac
gagggaagggaagcagggttgcaccagctgatgcactgatatctcaaccc
tgtgtgccttacacgttttccatctccaccttgctgggttccagtgtctc
ccctgtgcctgacaatgctactgtagttgttgggattcttccttactgaa
cgccagccttgagcacctggaaacagctctttggtagtctctccgcaaag
ggttctattttgatgaagtctaatgacctgtttttttcttgctgcagttt
tggttatcacatcattaaacagtcatttgaaagacatttgtgtggaccca
ggcatgatggcacactcctacagtcccaaaactccagaagattaatgtga
gagtatcatcattttaaagcttgcctgggttacagagagagaggcccctt
aaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaggaaataa
ggaagggagagagaggggggagaatgaaagaaagaaagaaggaaagaaag
aaaggaaggaaggaaggaaggaaggaaggaaggaaggaagaaagaaagaa
agaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaag
aaagaaagaaagagggggagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_146644620_146645623
seq2: B6Ng01-047C01.b_44_1035

seq1  GAATTCTCACCCTAGAAACACACATTAAAAGCTAAGAGTAAATGGAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCCTAGAAACACACATTAAAAGCTAAGAGTAAATGGAAATA  50

seq1  GAAAGACTGCCAAGCATTTGTGAAAGGCCATTATTTCCTTATCTATCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACTGCCAAGCATTTGTGAAAGGCCATTATTTCCTTATCTATCCAA  100

seq1  GCAAGGCCTTGTTTTGAGCACTGGAATTTCATTGCCTACATTTTCCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCCTTGTTTTGAGCACTGGAATTTCATTGCCTACATTTTCCTGTT  150

seq1  GGGACAAGTTGGGTAGGGTGAAGTGGTGCAGGAAGCTGTGTGCTCATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAGTTGGGTAGGGTGAAGTGGTGCAGGAAGCTGTGTGCTCATTAT  200

seq1  TTATGTGCATTACCTGGGGTGCTGTGGACTGTGGTTGTCATAGCACCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGCATTACCTGGGGTGCTGTGGACTGTGGTTGTCATAGCACCATC  250

seq1  CCCTAATGAGCAGCCACGGGAAGACATGATAATGAACCGTGGAAGTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAATGAGCAGCCACGGGAAGACATGATAATGAACCGTGGAAGTCTCA  300

seq1  GGAGGCCACAGACAGGTAGTAGGGGTATAGAATATTCCTTAGCTTTTATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCCACAGACAGGTAGTAGGGGTATAGAATATTCCTTAGCTTTTATC  350

seq1  AATTTCTTATGCTTATGCTTAAAACACATCTGCAGCAGAGACAGTGTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTATGCTTATGCTTAAAACACATCTGCAGCAGAGACAGTGTAAA  400

seq1  TCTTTAATAGAAGAGAAGGAAAATTCCAGAAGCTAGTTAATTTCACCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATAGAAGAGAAGGAAAATTCCAGAAGCTAGTTAATTTCACCAGG  450

seq1  GTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTCCTTAGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTCCTTAGAATG  500

seq1  GATTTTGGTTTACCTACAAGGAAAGGAATGAGTATAGACCTGCAGTATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGGTTTACCTACAAGGAAAGGAATGAGTATAGACCTGCAGTATAG  550

seq1  ATGGCTGTTTGGTTCATGGCCAGGTAGAAATGCTTCCCCAAACTAAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGTTTGGTTCATGGCCAGGTAGAAATGCTTCCCCAAACTAAGATA  600

seq1  CAGATGTCACCCCAATTGTCTAAGTAGTAACTTGCTTGTTAGTTTGTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTCACCCCAATTGTCTAAGTAGTAACTTGCTTGTTAGTTTGTCCT  650

seq1  CACCCACAAACAGAATCTAAAGGAACAGTTTAGTTTTCACTCGAGTAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCACAAACAGAATCTAAAGGAACAGTTTAGTTTTCACTCGAGTAAGC  700

seq1  CAGCC-TTGAAGGTTTGAATCTGGTAAAAGACCCTGTTGCAATATGAGTA  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTTGAAGGTTTGAATCTGGTAAAAGACCCTGTTGCAATATGAGTA  750

seq1  TTAAGTTGTATATGGAGCACAGGGGAAGCAACTCCGTTGTCTGTAAAATG  799
      ||||||||||||||||||||| ||||||||||| |||||||||| |||||
seq2  TTAAGTTGTATATGGAGCACA-GGGAAGCAACTTCGTTGTCTGT-AAATG  798

seq1  CCAGGGTTTGCCTAGATTAGATGAAGTTTTTGTTACTTGTCTCTAAAGTT  849
      | |||||||||||||||||||||||||||||  |||||||||||||||||
seq2  CTAGGGTTTGCCTAGATTAGATGAAGTTTTTTGTACTTGTCTCTAAAGTT  848

seq1  CAAACCAAACCAAAACCAAAGCCCTTTCTTTCACCTGCTATTTATGCATA  899
      |||||  || ||||||||||||| ||||||||| ||||||||||||||||
seq2  CAAAC--AAACAAAACCAAAGCCTTTTCTTTCA-CTGCTATTTATGCATA  895

seq1  CATAGAGAACAAGTGCCTCCCAGACATCAGGAAAATGATTTTCTTCAAAT  949
      ||||||||| |||||||||||||||||||||||||||| ||||||| || 
seq2  CATAGAGAA-AAGTGCCTCCCAGACATCAGGAAAATGA-TTTCTTCGAA-  942

seq1  TCTCTCGTTAGCTTGGATAGTAGATGAGACTGGGATCATGCGATGTGAAA  999
      ||||||| |||||| ||||||| ||||||||||||||  ||||  || ||
seq2  TCTCTCG-TAGCTT-GATAGTA-ATGAGACTGGGATCTAGCGA--TGGAA  987

seq1  TTGTA  1004
      |||||
seq2  TTGTA  992

seq1: chr3_146685812_146686532
seq2: B6Ng01-047C01.g_67_791 (reverse)

seq1  CCTCCCTCCCCC----TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  46
      ||||||||||||    ||||||||||||||||||||||||||||||||||
seq2  CCTCCCTCCCCCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  50

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTT  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTT  100

seq1  CCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCCTTCTTTCTTTCTTTC  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCCTTCTTTCTTTCTTTC  150

seq1  ATTCTCCCCCCTCTCTCTCCCTTCCTTATTTCCTTCCTTCCTTCCTTCCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCCCCCTCTCTCTCCCTTCCTTATTTCCTTCCTTCCTTCCTTCCT  200

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTAAGGGGCCTCTCTCTCTGTAACCCA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTCCTTCCTTCCTTAAGGGGCCTCTCTCTCTGTAACCCA  250

seq1  GGCAAGCTTTAAAATGATGATACTCTCACATTAATCTTCTGGAGTTTTGG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCTTTAAAATGATGATACTCTCACATTAATCTTCTGGAGTTTTGG  300

seq1  GACTGTAGGAGTGTGCCATCATGCCTGGGTCCACACAAATGTCTTTCAAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAGGAGTGTGCCATCATGCCTGGGTCCACACAAATGTCTTTCAAA  350

seq1  TGACTGTTTAATGATGTGATAACCAAAACTGCAGCAAGAAAAAAACAGGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTTAATGATGTGATAACCAAAACTGCAGCAAGAAAAAAACAGGT  400

seq1  CATTAGACTTCATCAAAATAGAACCCTTTGCGGAGAGACTACCAAAGAGC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGACTTCATCAAAATAGAACCCTTTGCGGAGAGACTACCAAAGAGC  450

seq1  TGTTTCCAGGTGCTCAAGGCTGGCGTTCAGTAAGGAAGAATCCCAACAAC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCCAGGTGCTCAAGGCTGGCGTTCAGTAAGGAAGAATCCCAACAAC  500

seq1  TACAGTAGCATTGTCAGGCACAGGGGAGACACTGGAACCCAGCAAGGTGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAGCATTGTCAGGCACAGGGGAGACACTGGAACCCAGCAAGGTGG  550

seq1  AGATGGAAAACGTGTAAGGCACACAGGGTTGAGATATCAGTGCATCAGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAAAACGTGTAAGGCACACAGGGTTGAGATATCAGTGCATCAGCT  600

seq1  GGTGCAACCCTGCTTCCCTTCCCTCGTCACAGGGGCCTCCTCTTTACAAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAACCCTGCTTCCCTTCCCTCGTCACAGGGGCCTCCTCTTTACAAC  650

seq1  TAGGAGGACTTCCATTAAAGGGTGAACCAATATCATCACCATGTATGCCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGGACTTCCATTAAAGGGTGAACCAATATCATCACCATGTATGCCA  700

seq1  ATGATCCTCACTAGGTAAAGAATTC  721
      |||||||||||||||||||||||||
seq2  ATGATCCTCACTAGGTAAAGAATTC  725