BAC Information

Click to search

BAC

Clone NameB6Ng01-047E12
Chromosome3 (Build37)
Map Location 141,845,479 - 141,846,613
singlet/doubletsinglet
Overlap genenone
Upstream genePdha2, Unc5c, LOC100039923, Bmpr1b
Downstream geneGabarapl2-ps3, Pdlim5, Gbp5, Gbp6, Gbp3, Gbp1, Gbp2, EG621605, Ccbl2, Gtf2b, Pkn2, LOC100040053, LOC100039883
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047E12.b
ACCDH872190
length1,112
definitionDH872190|Mus musculus domesticus DNA, BAC clone: B6Ng01-047E12, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttgacagaagtatttacttaacccagttttaaacaatgatta
taagaatgttatcattgcataaaaatggccttgctgtattatcttttcct
acctcaagattgttcaaagacctctctttctttacctaagccctcctctc
cttgacttccctgttcccacctcccacctcttccttcagaacctctatat
atttcaaaattacagttatctactttagcatcactgtttcagacaccccc
tcagtggcccttctattataggaattcctggactccacctttcagagatt
actcaagcgctcactgaggagttactgtgtgcctggtgctgttgtaggta
tatgagctttacaagtagctatgaacgtgtgaagctaatctctgatggct
gggttacctaacaagtgctgacagggagtgaatctgcccattgttttctc
cagagtctagcatacacctggaatgtaattcctcgaatattcattgaata
cagaaaaacccaagcaaaggagaaggcaattacactttaaccttcatggc
ttaaattacattcattaaattaaactcattccaccctcgttgcctcaaat
tcatgtctaggcccagaagaatcaaaagtctctggactcattagaaatag
aaaatctcccgtcctacaacttctaaatctgcatgtcaacaaaatccttc
ggtatttctgtggattacttgatctagactcctttcataaatttaatctt
cttaggctgtacctaagtcttccctaaacccctaaaactcttcctgcacc
caggttcttgcagtatgtaatacaagccaagtgaacgggatcaaggaaga
tggcttgttttcctgctcaagggccagagtctcctctagtagcatcatat
tccgggctggaaaggcttgaaaacactcgtttgtttacacgacacgtgtg
acgtgaggggactgcatatagactctcatgtcatatgacaaagtcattgg
aatcactcatgcagagagtgcacaggtcatattctttcttcttatttgta
caaatatgtacatgtgacctgtgactttatgggggttgagtgccttatat
gttaatagatca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_141845479_141846613
seq2: B6Ng01-047E12.b_46_1157 (reverse)

seq1  TGATCTAATTAACATATAAGGCACTCTACCCACAATAAAAGTCACAGGTC  50
      |||||| ||||||||||||||||||| |||| ||   |||||||||||||
seq2  TGATCT-ATTAACATATAAGGCACTCAACCCCCA--TAAAGTCACAGGTC  47

seq1  ACATGTACATTATTTTGTAACAAATACAGAAGAAAGATATTGAACCCTGT  100
      ||||||||||   ||||| ||||||| ||||||||||   |||  |||||
seq2  ACATGTACAT--ATTTGT-ACAAATA-AGAAGAAAGAATATGA--CCTGT  91

seq1  GCACTCTCTGCAATGAGTGATTTCCAATGACTTTGTCATATGAACCATGA  150
      ||||||||||| |||||||| ||||||||||||||||||||||  |||| 
seq2  GCACTCTCTGC-ATGAGTGA-TTCCAATGACTTTGTCATATGA--CATG-  136

seq1  AGAGTCTATATGCAGTTCCCCTCACGTTCACAACGTGTCCTTGGTAAAAC  200
      ||||||||||||||| |||||||||| |||| ||||||| |  || ||||
seq2  AGAGTCTATATGCAG-TCCCCTCACG-TCAC-ACGTGTCGT--GT-AAAC  180

seq1  AAACGGAGGTGTTTTCAAGCCTTTCCAGCCCGGAATATTGATGCTACTAG  250
      |||||   ||||||||||||||||||||||||||||| ||||||||||||
seq2  AAACG--AGTGTTTTCAAGCCTTTCCAGCCCGGAATA-TGATGCTACTAG  227

seq1  AGGAGACTCTGGCCCTTGAGCAGGAAAACAAGCCATCTTCCTTGATCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTCTGGCCCTTGAGCAGGAAAACAAGCCATCTTCCTTGATCCCG  277

seq1  TTCACTTGGCTTGTATTACATACTGCAAGAACCTGGGTGCAGGAAGAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTGGCTTGTATTACATACTGCAAGAACCTGGGTGCAGGAAGAGTT  327

seq1  TTAGGGGTTTAGGGAAGACTTAGGTACAGCCTAAGAAGATTAAATTTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGGTTTAGGGAAGACTTAGGTACAGCCTAAGAAGATTAAATTTATG  377

seq1  AAAGGAGTCTAGATCAAGTAATCCACAGAAATACCGAAGGATTTTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGTCTAGATCAAGTAATCCACAGAAATACCGAAGGATTTTGTTGA  427

seq1  CATGCAGATTTAGAAGTTGTAGGACGGGAGATTTTCTATTTCTAATGAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGATTTAGAAGTTGTAGGACGGGAGATTTTCTATTTCTAATGAGT  477

seq1  CCAGAGACTTTTGATTCTTCTGGGCCTAGACATGAATTTGAGGCAACGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACTTTTGATTCTTCTGGGCCTAGACATGAATTTGAGGCAACGAG  527

seq1  GGTGGAATGAGTTTAATTTAATGAATGTAATTTAAGCCATGAAGGTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAATGAGTTTAATTTAATGAATGTAATTTAAGCCATGAAGGTTAAA  577

seq1  GTGTAATTGCCTTCTCCTTTGCTTGGGTTTTTCTGTATTCAATGAATATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAATTGCCTTCTCCTTTGCTTGGGTTTTTCTGTATTCAATGAATATT  627

seq1  CGAGGAATTACATTCCAGGTGTATGCTAGACTCTGGAGAAAACAATGGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGAATTACATTCCAGGTGTATGCTAGACTCTGGAGAAAACAATGGGC  677

seq1  AGATTCACTCCCTGTCAGCACTTGTTAGGTAACCCAGCCATCAGAGATTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCACTCCCTGTCAGCACTTGTTAGGTAACCCAGCCATCAGAGATTA  727

seq1  GCTTCACACGTTCATAGCTACTTGTAAAGCTCATATACCTACAACAGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCACACGTTCATAGCTACTTGTAAAGCTCATATACCTACAACAGCAC  777

seq1  CAGGCACACAGTAACTCCTCAGTGAGCGCTTGAGTAATCTCTGAAAGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACACAGTAACTCCTCAGTGAGCGCTTGAGTAATCTCTGAAAGGTG  827

seq1  GAGTCCAGGAATTCCTATAATAGAAGGGCCACTGAGGGGGTGTCTGAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGGAATTCCTATAATAGAAGGGCCACTGAGGGGGTGTCTGAAAC  877

seq1  AGTGATGCTAAAGTAGATAACTGTAATTTTGAAATATATAGAGGTTCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGCTAAAGTAGATAACTGTAATTTTGAAATATATAGAGGTTCTGA  927

seq1  AGGAAGAGGTGGGAGGTGGGAACAGGGAAGTCAAGGAGAGGAGGGCTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGGTGGGAGGTGGGAACAGGGAAGTCAAGGAGAGGAGGGCTTAG  977

seq1  GTAAAGAAAGAGAGGTCTTTGAACAATCTTGAGGTAGGAAAAGATAATAC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGAAAGAGAGGTCTTTGAACAATCTTGAGGTAGGAAAAGATAATAC  1027

seq1  AGCAAGGCCATTTTTATGCAATGATAACATTCTTATAATCATTGTTTAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGGCCATTTTTATGCAATGATAACATTCTTATAATCATTGTTTAAA  1077

seq1  ACTGGGTTAAGTAAATACTTCTGTCAAGTGAATTC  1135
      |||||||||||||||||||||||||||||||||||
seq2  ACTGGGTTAAGTAAATACTTCTGTCAAGTGAATTC  1112