BAC Information

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BAC

Clone NameB6Ng01-047G09
Chromosome7 (Build37)3 (Build37)
Map Location 84,924,793 - 84,925,7517,220,791 - 7,221,327
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneA330068G13Rik, Ntrk3, Mrpl46
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047G09.bB6Ng01-047G09.g
ACCDH872270DH872271
length938932
definitionDH872270|Mus musculus domesticus DNA, BAC clone: B6Ng01-047G09, 5' end.DH872271|Mus musculus domesticus DNA, BAC clone: B6Ng01-047G09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,924,793 - 84,925,751)(7,220,791 - 7,221,327)
sequence
gaattctctcttaatacagtcctataaaacccaacagagaatcaagcact
caagacagtctagcctgctttgactatcattgaacagaattactaaggtt
ctgaattattcttcaacaatatggccataatcagcagcctcacagttaaa
tttaatttttaaagcaactttaaagtgttcagaatataacaaacctcccc
tctctctatctctctctctctctcactcgttcactcactcactcactcac
tcactcactcactcactcactaactctctctctcactcattcactcactc
actcactcactcactctctctctttcttatgtgtatacatacatctaaat
aagaataatgaaaattataaagtcaattgtagcgttaataatgaaaggac
cttgccagacaaattacagcttcattattgggttcaattatcaagtgaga
ggacaaatataatacagtgcacgtttccaatcttgacttcattaatgcat
tacatacagcacttcacagaaagatagcctattggggcatctaaatggaa
ttagaggtgagaaattgcaggggctgagagttagctggctacatgcagag
agggaaggcagcagcagtgacaaccctttggaaggacagcaacatggacc
ctatcttactcagcatcttctaatgatgtggaacgagaaacacaatgtat
taattaaatttgacaaggatgctaaactgctttagtagagtgaacctgga
gggtttagaaatacagtgaggaaatagaaagaaaaaaaagttggttaaaa
ctgcaaatagtacattctgggagaataagccatgagaacagcagagatct
caaatcagactagacacatttaggaatagagatgaaagtcacacgtgttt
tctttccaagagcatgagcatactacttatgctcccta
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaatcctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatatcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtaccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggtaattctttgaa
tagttcttcttgtttccacttggttgatttcaccctgagttgattattcc
tgcgtctactcctctgggtgatttgcttcttttttctagagctttagatg
tgtgtcagctgctagtatgtgctctctccgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_84924793_84925751
seq2: B6Ng01-047G09.b_45_982 (reverse)

seq1  TAGGGGAAGCATAAGTAGTATTGCTCCATGCTCCCTTTGGGAAAAGAAAA  50
      |||||  ||||||||||||| |||| |||||||   ||||  ||||||||
seq2  TAGGG--AGCATAAGTAGTA-TGCT-CATGCTC---TTGG--AAAGAAAA  41

seq1  CACGTGTGACTTTCCATCTCTATTTCCCTAAATGTGTCCTAGTTCTGATT  100
      ||||||||||||| ||||||||||  ||||||||||| |||| ||||| |
seq2  CACGTGTGACTTT-CATCTCTATT--CCTAAATGTGT-CTAG-TCTGA-T  85

seq1  TTGAGATCTCTGGCTGTTTCTCATGGCTTATTTCTCCCAGAATGTACTAT  150
      ||||||||||| |||| ||||||||||||| |||||||||||||||||||
seq2  TTGAGATCTCT-GCTG-TTCTCATGGCTTA-TTCTCCCAGAATGTACTAT  132

seq1  TTGCAGTTTTTAACCAACTTTTTTTTTCTTTTCTATTTCCTCACTGTATT  200
      |||||| |||||||||||||||||||   |||||||||||||||||||||
seq2  TTGCAG-TTTTAACCAACTTTTTTTT--CTTTCTATTTCCTCACTGTATT  179

seq1  TCTAAACCCTCCAGGTTCACTCTACTAAAGCAGTTTAGCATCCTTGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACCCTCCAGGTTCACTCTACTAAAGCAGTTTAGCATCCTTGTCAA  229

seq1  ATTTAATTAATACATTGTGTTTCTCCTTCCACATCATTAGAAGATGCTGA  300
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTTAATTAATACATTGTGTTTCTCGTTCCACATCATTAGAAGATGCTGA  279

seq1  GTAAGATAGGGTCCATGTTGCTGTCCTTCCAAAGGGTTGTCACTGCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGATAGGGTCCATGTTGCTGTCCTTCCAAAGGGTTGTCACTGCTGCT  329

seq1  GCCTTCCCTCTCTGCATGTAGCCAGCTAACTCTCAGCCCCTGCAATTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCCTCTCTGCATGTAGCCAGCTAACTCTCAGCCCCTGCAATTTCT  379

seq1  CACCTCTAATTCCATTTAGATGCCCCAATAGGCTATCTTTCTGTGAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTAATTCCATTTAGATGCCCCAATAGGCTATCTTTCTGTGAAGTG  429

seq1  CTGTATGTAATGCATTAATGAAGTCAAGATTGGAAACGTGCACTGTATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGTAATGCATTAATGAAGTCAAGATTGGAAACGTGCACTGTATTA  479

seq1  TATTTGTCCTCTCACTTGATAATTGAACCCAATAATGAAGCTGTAATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTCCTCTCACTTGATAATTGAACCCAATAATGAAGCTGTAATTTG  529

seq1  TCTGGCAAGGTCCTTTCATTATTAACGCTACAATTGACTTTATAATTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCAAGGTCCTTTCATTATTAACGCTACAATTGACTTTATAATTTTC  579

seq1  ATTATTCTTATTTAGATGTATGTATACACATAAGAAAGAGAGAGAGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTTATTTAGATGTATGTATACACATAAGAAAGAGAGAGAGTGAG  629

seq1  TGAGTGAGTGAGTGAGTGAATGAGTGAGAGAGAGAGTTAGTGAGTGAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGAGTGAGTGAGTGAATGAGTGAGAGAGAGAGTTAGTGAGTGAGTG  679

seq1  AGTGAGTGAGTGAGTGAGTGAGTGAGTGAACGAGTGAGAGAGAGAGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGTGAGTGAGTGAGTGAGTGAGTGAACGAGTGAGAGAGAGAGAGAG  729

seq1  ATAGAGAGAGGGGAGGTTTGTTATATTCTGAACACTTTAAAGTTGCTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAGAGGGGAGGTTTGTTATATTCTGAACACTTTAAAGTTGCTTTA  779

seq1  AAAATTAAATTTAACTGTGAGGCTGCTGATTATGGCCATATTGTTGAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAATTTAACTGTGAGGCTGCTGATTATGGCCATATTGTTGAAGA  829

seq1  ATAATTCAGAACCTTAGTAATTCTGTTCAATGATAGTCAAAGCAGGCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCAGAACCTTAGTAATTCTGTTCAATGATAGTCAAAGCAGGCTAG  879

seq1  ACTGTCTTGAGTGCTTGATTCTCTGTTGGGTTTTATAGGACTGTATTAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTTGAGTGCTTGATTCTCTGTTGGGTTTTATAGGACTGTATTAAG  929

seq1  AGAGAATTC  959
      |||||||||
seq2  AGAGAATTC  938

seq1: chr3_7220791_7221327
seq2: B6Ng01-047G09.g_65_601 (reverse)

seq1  ATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTTGACCTTCTAAACAGTCCCATATCCCCTAAAGAAATAGAAGCA  50

seq1  GTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTAATAGTCTCCCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAG  100

seq1  TGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAACTCCAGTTCTGCACA  150

seq1  AACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTTCACAAGATAGAAGTAGAAGGTATTCTACCCAACTCATTTTAT  200

seq1  GAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCACTATTACTCTGATACCTAAACCACAGAAAGATCCAACAAAGAT  250

seq1  AGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTTCAGACCAATTTCTCTTATGAACATCGATGCAAAAATCCTTA  300

seq1  ATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTCTCGCTAACCGAATCCAAGAACACATTAAAGCAATCATCCAT  350

seq1  CCTGACCAAGTAGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACG  400
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTGACCAAGTAGGATTTATTCCAGGGATGCAGGGATGGTTTAATATACG  400

seq1  AAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCATCAATGTAATCCATTATATAAACAAACTCAAAGACAAAAACC  450

seq1  ACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATCATCTCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACAC  500

seq1  CCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTC  537
      |||||||||||||||||||||||||||||||||||||
seq2  CCATTCATGATAAAAGTTCTGGAAAGATCAGGAATTC  537