BAC Information

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BAC

Clone NameB6Ng01-047L05
Chromosome16 (Build37)3 (Build37)
Map Location 50,679,094 - 50,680,163127,391,119 - 127,391,224
singlet/doubletsingletsinglet
Overlap geneLOC672778
Upstream geneIft57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54
Downstream gene5330426P16Rik, EG639820, LOC627543
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047L05.bB6Ng01-047L05.g
ACCDH872491DH872492
length1,067777
definitionDH872491|Mus musculus domesticus DNA, BAC clone: B6Ng01-047L05, 5' end.DH872492|Mus musculus domesticus DNA, BAC clone: B6Ng01-047L05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(50,679,094 - 50,680,163)(127,391,119 - 127,391,224)
sequence
gaattcctacctggatagttttgtctcttacagatcaggataattgaatt
cctactctactggcctttattgtgctgagcaggaatgatggaagccgtgt
tttactgttgcgctgtatctaaagcattatctttcactaataagcatgac
gtcagctagagtctatggattttattgcttttattgattcaaagaccagt
ttttaacccggtaagagagttttcatctattcctagaacgaggaaaggtt
tttgtttttaatttcttgaatcatgaagtgatgatgcttactaaatattc
ttttcctgaatctattcatatcatgtagtgtcagagtttagataccacaa
cagatacgttcatttctcaagatggtccttggccattgttcagacattgc
tgtatacaatatgctaagggtttggtttggtttggtttggattggtttga
tttctgagacagggccttgttgtacaagacaggaaggcaataagcttact
ttgcagcccaggctggatttgaactcatgattcattggccctagtctcca
aagtgctggaattactgaacacaccaccacatccaactttatcagttgat
agttcatctaggatttttgtgttgacgtttaggagtcaggaacttgaaag
aatttctcgtcttctctgtctagcattggtccagtaagcatgttggtctc
atgaatgcatgtggggaggccttttgtgattctcttttgagaaagaggat
gtagcattgataatcatttttcttcaaatatgccaggaaaaatctctgaa
ccacatttttaaaattagaaatccaatttgtgtcaaagtggtgagtctac
ctagaatgcgtgttttatcttccgtgagcaacagcagctgctcgtgcttg
tggcttgggtgagctttgtgctgttgaattaatgtgtaactgctcttcca
cggtgctcctcattaacgtggatctaagtgacaaactccttagtcccaga
gtgatagtttggtgtttttctcagctatcctcttggaaagtaaaaaaaaa
atggtggtgtgtggtgt
gaattctaatccaaggaagagtaccactcatggtcggagggtattcctac
ctcaattaatttaattaagacaatcccaaacaggaatggcaaaggcttgt
ctttcaggtaactctggattctgtcaaactgacaattaacattagccatc
tcaactactaagtaaaagatgccatctgacatataaatctaagacaacaa
caacaacaacaaaaaaaaattagtggttcctggggtttaaggtagggcca
acaaagctcacagattttttgggggcaattaaaatacttcatataatgta
gtaagaacattagacatttgcccaaattcttaaaatgcacaacaccaatc
gctaatctaagtccacctaaaaactttgagtgatggtaatgtgttaaatg
tagtaagtttatcactttcagcaaacttacccctcaagggccctaatcca
atataacttgaatcctctaaagaggaagagacactagcaatgacttcaca
aagagagtccatgtacaagagaacaaaaggtctaagaagacaactaaaat
aaccttgaccttagccttcaaacattcagagttgtaagggaatacagttc
tgttttgaagtcatgcagtccatggattttgttatgatggtcctgaaaaa
ttaacagagctgttacctaaggctgtagttagaaagaaagaaagagagag
agagagagagagagagagagagagagagagagagagagagagatggaagg
aacgaacgaaggaatgaaagaaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_50679094_50680163
seq2: B6Ng01-047L05.b_44_1110

seq1  GAATTCCTACCTGGATAGTTTTGTCTCTTACAGATCAGGATAATTGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTACCTGGATAGTTTTGTCTCTTACAGATCAGGATAATTGAATT  50

seq1  CCTACTCTACTGGCCTTTATTGTGCTGAGCAGGAATGATGGAAGCCGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCTACTGGCCTTTATTGTGCTGAGCAGGAATGATGGAAGCCGTGT  100

seq1  TTTACTGTTGCGCTGTATCTAAAGCATTATCTTTCACTAATAAGCATGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTTGCGCTGTATCTAAAGCATTATCTTTCACTAATAAGCATGAC  150

seq1  GTCAGCTAGAGTCTATGGATTTTATTGCTTTTATTGATTCAAAGACCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTAGAGTCTATGGATTTTATTGCTTTTATTGATTCAAAGACCAGT  200

seq1  TTTTAACCCGGTAAGAGAGTTTTCATCTATTCCTAGAACGAGGAAAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAACCCGGTAAGAGAGTTTTCATCTATTCCTAGAACGAGGAAAGGTT  250

seq1  TTTGTTTTTAATTTCTTGAATCATGAAGTGATGATGCTTACTAAATATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTAATTTCTTGAATCATGAAGTGATGATGCTTACTAAATATTC  300

seq1  TTTTCCTGAATCTATTCATATCATGTAGTGTCAGAGTTTAGATACCACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTGAATCTATTCATATCATGTAGTGTCAGAGTTTAGATACCACAA  350

seq1  CAGATACGTTCATTTCTCAAGATGGTCCTTGGCCATTGTTCAGACATTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACGTTCATTTCTCAAGATGGTCCTTGGCCATTGTTCAGACATTGC  400

seq1  TGTATACAATATGCTAAGGGTTTGGTTTGGTTTGGTTTGGATTGGTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACAATATGCTAAGGGTTTGGTTTGGTTTGGTTTGGATTGGTTTGA  450

seq1  TTTCTGAGACAGGGCCTTGTTGTACAAGACAGGAAGGCAATAAGCTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGACAGGGCCTTGTTGTACAAGACAGGAAGGCAATAAGCTTACT  500

seq1  TTGCAGCCCAGGCTGGATTTGAACTCATGATTCATTGGCCCTAGTCTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCCCAGGCTGGATTTGAACTCATGATTCATTGGCCCTAGTCTCCA  550

seq1  AAGTGCTGGAATTACTGAACACACCACCACATCCAACTTTATCAGTTGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGAATTACTGAACACACCACCACATCCAACTTTATCAGTTGAT  600

seq1  AGTTCATCTAGGATTTTTGTGTTGACGTTTAGGAGTCAGGAACTTGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCTAGGATTTTTGTGTTGACGTTTAGGAGTCAGGAACTTGAAAG  650

seq1  AATTTCTCGTCTTCTCTGTCTAGCATTGGTCCAGTAAGCATGTTGGTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCGTCTTCTCTGTCTAGCATTGGTCCAGTAAGCATGTTGGTCTC  700

seq1  ATGAATGCATGTGGGGAGGCCTTTTGTGATTCTCTTTTGAGAAAGAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGCATGTGGGGAGGCCTTTTGTGATTCTCTTTTGAGAAAGAGGAT  750

seq1  GTAGCATTGATAATCATTTTTCTTCAAATATGCCAGGAAAAATCTCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCATTGATAATCATTTTTCTTCAAATATGCCAGGAAAAATCTCTGAA  800

seq1  CCACATTTTTAAAATTAGAAATCCAATTTGTGTCAAAGTGGTGAGTCTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTTTAAAATTAGAAATCCAATTTGTGTCAAAGTGGTGAGTCTAC  850

seq1  CTAGAATGCGTGTTTTATCTTCGGTGAGCACCAGCAGCTGCTCGTGCTTG  900
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  CTAGAATGCGTGTTTTATCTTCCGTGAGCAACAGCAGCTGCTCGTGCTTG  900

seq1  TGGCTTGGGTGAGCCTTGTGCTGTTGAGTTAATGTGTAACTGCTCTTCCA  950
      |||||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  TGGCTTGGGTGAGCTTTGTGCTGTTGAATTAATGTGTAACTGCTCTTCCA  950

seq1  CGGTGCTCCTCATTAACGTTGGATCTAAGTGACAAACTCCTTCAGTCCCA  1000
      |||||||||||||||||| ||||||||||||||||||||||| |||||| 
seq2  CGGTGCTCCTCATTAACG-TGGATCTAAGTGACAAACTCCTT-AGTCCC-  997

seq1  AGAGTGATAGTTT-GTGTTTTTCTCAGCCTATCCTCTTTGGTAATGTAAA  1049
      ||||||||||||| ||||||||||||| ||||||||||  | || |||||
seq2  AGAGTGATAGTTTGGTGTTTTTCTCAG-CTATCCTCTT--GGAAAGTAAA  1044

seq1  AAAAAAAATGT-GTGTGT-GTGT  1070
      |||||||  || |||||| ||||
seq2  AAAAAAATGGTGGTGTGTGGTGT  1067

seq1: chr3_127391119_127391224
seq2: B6Ng01-047L05.g_746_842 (reverse)

seq1  CTTCCTTCCTTCCTTCCTTCCTTCCCTCCCTCCCTCCCTCCTCTCTCTCT  50
      | |||||| ||| ||||||| |||  ||| |||          |||||||
seq2  CATCCTTCTTTCATTCCTTCGTTCGTTCCTTCC---------ATCTCTCT  41

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTTT  91

seq1  CTTTCT  106
      ||||||
seq2  CTTTCT  97