BAC Information

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BAC

Clone NameB6Ng01-047P04
Chromosome3 (Build37)
Map Location 38,272,201 - 38,367,069
singlet/doubletdoublet
Overlap geneLOC665838, Ankrd50
Upstream geneFgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821, LOC100041366, LOC100040785
Downstream geneLOC100041378, LOC665855, LOC100040824, Fat4, LOC100041432, LOC100040853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047P04.bB6Ng01-047P04.g
ACCDH872667DH872668
length9481,070
definitionDH872667|Mus musculus domesticus DNA, BAC clone: B6Ng01-047P04, 5' end.DH872668|Mus musculus domesticus DNA, BAC clone: B6Ng01-047P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,272,201 - 38,273,159)(38,365,977 - 38,367,069)
sequence
gaattcttcatttttcattcttcttcagttatagttgtaacagcatttca
gccaaaagaaactataatgcattttcattgtttcatatttggttcaattc
tgttttcaaaatagtcttagaaatacttctttcttcctaccagcctcttc
cacgtcccatcactgactacatagcttaatagccaagtatctcctaagct
gaaataagccattattgctttcatctactaccatggcttctcagaagtct
tccccagcatcttgggtaaccagctccttgctcaagactccagaaagact
ctgaaaacaggtgccaacgtgccttactcttcagcaatgcaagtactcct
caaatgtcattctctgtgaactcttcctgtaaaactgactgtgtctcata
cgcaaaaaactcaggcgcacaaggacatacaactcccttttcctctaacc
ctaatcagcacttttaggtgtgtcactccctcacaagactgtagactcca
tgagatgatagaactttctcgtatgttgtgattagcacttattcccagaa
cccgaaacaggacctggcatgttcagattgctcagaaaatatgtagctag
agagagaatgaaagtggacgcctgactcattcacaaaccagctttgcatg
ctgagcacagcaccctgggggttcactttccttgtctgttccccttatcc
atgcatagagagggctgctttgagactgtccaggttgtgaagatgtgggg
accatcttcatcatcaattgttcccccatttaaacatttgaaatactggg
atgatacaatgacaaattcattaggaactccaatgatttttgtatgttgg
acagattcatagtctacactttagaagtaggagtacactgcttatgctgc
agccacatttatctagatctaaatagaaagaaaaatagtatgtgatct
gaattcacttccatggcgatggatgcagagaagctgcaaggtgtgcagct
aagaggctggagacctaggagagctgacctgagtcagggcagtgggtggg
gcaaggtctcatggcaaagctcatttcctaaagacccaaacagatgagtt
tttgaacctgaagagagaagtaaaatgtacttctactcaagcagtcacac
agttagccgtcagctgactgagggagagccaacctttgggaccttaacct
cagaagcgtccagaacagaagaccatgtgtgggcatcctgcggcctaggc
aagttgacacataaagccaaccaccacaagcccacaggagctgagtggaa
gccagaagtgagtcgactgtgctcacatctgggaatgaagacactgttct
ggagttgtgggtatcttattcttgagtgttgtgaggactttatacatttt
ggaaagaaatctttatcaataaattcttcagaaatatattaggccactca
gtcattcacccagcaaacattcataggtgatccttctgaagggtgagcta
ttgggagggcaaaggtcagttcacctaagcatcctttctctttcctaggg
atcaggaaggtagatgccacactaccagttccttggtgacctgactagtc
ccagttgttgagggcttttgagcagtgtgtgtttgcagcaccctccctgt
gccaggttgcagagtaagcagttctatcccaagccctctgtgtgtgtatt
tgagcggagctctggggatagagaagaaagtgagcatgctagcaggcata
tgaggaggattctggcacgagagagagggtctgttcaaaggctcacaagc
aggcccgcagagtcagagggaatgggcaagcagtaatttttggtcagggc
tggaaacagaaacctgtgttggactcagcatgctgcagggcagtgtgact
tgtagcttgagggtatgatgggattgagccttgcagccagtcatgacaag
gctttcttgtcatgactgctcagcattagtgtgtgagagcagtcagctct
cgtgaaactcagacgcccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_38272201_38273159
seq2: B6Ng01-047P04.b_43_990

seq1  GAATTCTTCATTTTTCATTCTTCTTCAGTTATAGTTGTAACAGCATTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTTTTCATTCTTCTTCAGTTATAGTTGTAACAGCATTTCA  50

seq1  GCCAAAAGAAACTATAATGCATTTTCATTGTTTCATATTTGGTTCAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAGAAACTATAATGCATTTTCATTGTTTCATATTTGGTTCAATTC  100

seq1  TGTTTTCAAAATAGTCTTAGAAATACTTCTTTCTTCCTACCAGCCTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCAAAATAGTCTTAGAAATACTTCTTTCTTCCTACCAGCCTCTTC  150

seq1  CACGTCCCATCACTGACTACATAGCTTAATAGCCAAGTATCTCCTAAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCCCATCACTGACTACATAGCTTAATAGCCAAGTATCTCCTAAGCT  200

seq1  GAAATAAGCCATTATTGCTTTCATCTACTACCATGGCTTCTCAGAAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGCCATTATTGCTTTCATCTACTACCATGGCTTCTCAGAAGTCT  250

seq1  TCCCCAGCATCTTGGGTAACCAGCTCCTTGCTCAAGACTCCAGAAAGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGCATCTTGGGTAACCAGCTCCTTGCTCAAGACTCCAGAAAGACT  300

seq1  CTGAAAACAGGTGCCAACGTGCCTTACTCTTCAGCAATGCAAGTACTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAACAGGTGCCAACGTGCCTTACTCTTCAGCAATGCAAGTACTCCT  350

seq1  CAAATGTCATTCTCTGTGAACTCTTCCTGTAAAACTGACTGTGTCTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTCATTCTCTGTGAACTCTTCCTGTAAAACTGACTGTGTCTCATA  400

seq1  CGCAAAAAACTCAGGCGCACAAGGACATACAACTCCCTTTTCCTCTAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAAAAACTCAGGCGCACAAGGACATACAACTCCCTTTTCCTCTAACC  450

seq1  CTAATCAGCACTTTTAGGTGTGTCACTCCCTCACAAGACTGTAGACTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCAGCACTTTTAGGTGTGTCACTCCCTCACAAGACTGTAGACTCCA  500

seq1  TGAGATGATAGAACTTTCTCGTATGTTGTGATTAGCACTTATTCCCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGATAGAACTTTCTCGTATGTTGTGATTAGCACTTATTCCCAGAA  550

seq1  CCCGAAACAGGACCTGGCATGTTCAGATTGCTCAGAAAATATGTAGCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGAAACAGGACCTGGCATGTTCAGATTGCTCAGAAAATATGTAGCTAG  600

seq1  AGAGAGAATGAAAGTGGACGCCTGACTCATTCACAAACCAGCTTTGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAATGAAAGTGGACGCCTGACTCATTCACAAACCAGCTTTGCATG  650

seq1  CTGAGCACAGCACCCTGGGGGTTCACTTTCCTTGTCTGTTCCCCTTATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCACAGCACCCTGGGGGTTCACTTTCCTTGTCTGTTCCCCTTATCC  700

seq1  ATGCATAGAGAGGGCTGCTTTGAGACTGTCCAGGTTGTGAAGATGTGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAGAGAGGGCTGCTTTGAGACTGTCCAGGTTGTGAAGATGTGGGG  750

seq1  ACCATCTTCATCATCAATTGTTCCCCCATTTAAAACATTTGAAATAACTG  800
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  ACCATCTTCATCATCAATTGTTCCCCCATTT-AAACATTTGAAAT-ACTG  798

seq1  GGATGATACAATGACAAATTCATTAGGAACTCCAATGATTTTTGTATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATACAATGACAAATTCATTAGGAACTCCAATGATTTTTGTATGTT  848

seq1  GGACAGATTCATAGTCTACACTTTAGGAAGTAGGAAGTACACTGCTTAAG  900
      ||||||||||||||||||||||||| |||||||| ||||||||||||| |
seq2  GGACAGATTCATAGTCTACACTTTA-GAAGTAGG-AGTACACTGCTTATG  896

seq1  GCTTCCAGCCACATTTATCTAGATCTAAATAAGAAAAGGAAAAAATAAGT  950
         | ||||||||||||||||||||||||| |||||  ||||||   |||
seq2  --CTGCAGCCACATTTATCTAGATCTAAAT-AGAAA--GAAAAA--TAGT  939

seq1  ATGTGATCT  959
      |||||||||
seq2  ATGTGATCT  948

seq1: chr3_38365977_38367069
seq2: B6Ng01-047P04.g_66_1135 (reverse)

seq1  GTGGGCGTCTGAGTTTCACGTAGCAGCTGACTCTGCTCTTCACACACTAA  50
      |||||||||||||||||||| || ||||||  |||||| |||||||||||
seq2  GTGGGCGTCTGAGTTTCACG-AG-AGCTGA--CTGCTC-TCACACACTAA  45

seq1  TGCTGAGCAAGTCATGAAACAGAAAGCCCTTTGTTCATGGACTGGCCTGG  100
      |||||||| |||||||| | ||||||||  ||| |||| |||||| ||| 
seq2  TGCTGAGC-AGTCATGACA-AGAAAGCC--TTG-TCAT-GACTGG-CTG-  87

seq1  CCAGGGCCTTCAATCCCATCATTACCCCTCAAGCTACAAGGTCCACACTG  150
       || |||  |||||||||||||   |||||||||||||||   |||||||
seq2  -CAAGGC--TCAATCCCATCAT--ACCCTCAAGCTACAAG--TCACACTG  130

seq1  CCCTGGCAGCATGCTGAGTCCAACCACAGGTTTCTGTTTCCAGGCCCTGA  200
      |||| |||||||||||||||||| |||||||||||||||||| |||||||
seq2  CCCT-GCAGCATGCTGAGTCCAA-CACAGGTTTCTGTTTCCA-GCCCTGA  177

seq1  CCAATAATTACTGCTTGCCCATTCCCTCTGACTCTGCGGGCCTGCTTGTG  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATTACTGCTTGCCCATTCCCTCTGACTCTGCGGGCCTGCTTGTG  227

seq1  GGCCTTTGAACAGACCCTCTCTCTCGTGCCAGAATCCTCCTCATATGCCT  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTGAACAGACCCTCTCTCTCGTGCCAGAATCCTCCTCATATGCCT  277

seq1  GCTAGCATGCTCACTTTCTTCTCTATCCCCAGAGCTCCGCTCAAATACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCATGCTCACTTTCTTCTCTATCCCCAGAGCTCCGCTCAAATACAC  327

seq1  ACACAGAGGGCTTGGGATAGAACTGCTTACTCTGCAACCTGGCACAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGGGCTTGGGATAGAACTGCTTACTCTGCAACCTGGCACAGGGA  377

seq1  GGGTGCTGCAAACACACACTGCTCAAAAGCCCTCAACAACTGGGACTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTGCAAACACACACTGCTCAAAAGCCCTCAACAACTGGGACTAGT  427

seq1  CAGGTCACCAAGGAACTGGTAGTGTGGCATCTACCTTCCTGATCCCTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCACCAAGGAACTGGTAGTGTGGCATCTACCTTCCTGATCCCTAGG  477

seq1  AAAGAGAAAGGATGCTTAGGTGAACTGACCTTTGCCCTCCCAATAGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAAGGATGCTTAGGTGAACTGACCTTTGCCCTCCCAATAGCTCA  527

seq1  CCCTTCAGAAGGATCACCTATGAATGTTTGCTGGGTGAATGACTGAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAGAAGGATCACCTATGAATGTTTGCTGGGTGAATGACTGAGTGG  577

seq1  CCTAATATATTTCTGAAGAATTTATTGATAAAGATTTCTTTCCAAAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATATTTCTGAAGAATTTATTGATAAAGATTTCTTTCCAAAATGT  627

seq1  ATAAAGTCCTCACAACACTCAAGAATAAGATACCCACAACTCCAGAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTCCTCACAACACTCAAGAATAAGATACCCACAACTCCAGAACAG  677

seq1  TGTCTTCATTCCCAGATGTGAGCACAGTCGACTCACTTCTGGCTTCCACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCATTCCCAGATGTGAGCACAGTCGACTCACTTCTGGCTTCCACT  727

seq1  CAGCTCCTGTGGGCTTGTGGTGGTTGGCTTTATGTGTCAACTTGCCTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTGTGGGCTTGTGGTGGTTGGCTTTATGTGTCAACTTGCCTAGG  777

seq1  CCGCAGGATGCCCACACATGGTCTTCTGTTCTGGACGCTTCTGAGGTTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGGATGCCCACACATGGTCTTCTGTTCTGGACGCTTCTGAGGTTAA  827

seq1  GGTCCCAAAGGTTGGCTCTCCCTCAGTCAGCTGACGGCTAACTGTGTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAAAGGTTGGCTCTCCCTCAGTCAGCTGACGGCTAACTGTGTGAC  877

seq1  TGCTTGAGTAGAAGTACATTTTACTTCTCTCTTCAGGTTCAAAAACTCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGAGTAGAAGTACATTTTACTTCTCTCTTCAGGTTCAAAAACTCAT  927

seq1  CTGTTTGGGTCTTTAGGAAATGAGCTTTGCCATGAGACCTTGCCCCACCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGGGTCTTTAGGAAATGAGCTTTGCCATGAGACCTTGCCCCACCC  977

seq1  ACTGCCCTGACTCAGGTCAGCTCTCCTAGGTCTCCAGCCTCTTAGCTGCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCTGACTCAGGTCAGCTCTCCTAGGTCTCCAGCCTCTTAGCTGCA  1027

seq1  CACCTTGCAGCTTCTCTGCATCCATCGCCATGGAAGTGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGCAGCTTCTCTGCATCCATCGCCATGGAAGTGAATTC  1070