BAC Information

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BAC

Clone NameB6Ng01-048A02
Chromosome3 (Build37)
Map Location 51,171,577 - 51,347,512
singlet/doubletdoublet
Overlap geneA630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7
Upstream geneSlc7a11, EG621304, LOC100039667, Ccrn4l, Elf2
Downstream geneLOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048A02.bB6Ng01-048A02.g
ACCDH872707DH872708
length858291
definitionDH872707|Mus musculus domesticus DNA, BAC clone: B6Ng01-048A02, 5' end.DH872708|Mus musculus domesticus DNA, BAC clone: B6Ng01-048A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,171,577 - 51,172,439)(51,347,222 - 51,347,512)
sequence
gaattctctcttacaggttgtcgtctgatctctaccctcctgaacaagca
aaaaaataaaaataaagaaatgtactttttttttttttaatacaagatct
cattatatagtcctggctagcctgaaattctctttataaaccagattggc
ttcgaacttacagagattcctttgcccttgccacctggatgctaggatta
aaggcatgaaccccactatagccacctaatgtctttttttgtgatgagga
gcagggtcttactatgtaaccctgggtggcctgaaactggctaggtagac
tatgctagatttgaactggaattctgcccatctctgcctctccaatgcta
ggatgaaaggtacacaagatcatagtgctctcctaactgttggatcctct
caccacccctagacaaaagtagtttctaaaagaaggcacacccagaagct
ataaggctattggatggaaaatcccgtatcataagtgaattgcttctgtg
agttgttggcccccgaggctctacatgctgcatacattattggcgctcat
gttggttgtatgccacaactagatgttaagttcccattgcaaaagacagt
acctgctttggcagctgagagtggagaaatctatgagtctgagctggagg
cctcatctcccctgattgaattcctagtccagccggcactggctgcggat
caagctagctgtagacgcttcatctaaccatggactctgtgtgcacacta
ctgtcttatttagggattctataccactctgataaacatcatgaccaaaa
tggactcggaaggaaatggtttatttcatcagactgttcgtagtccatcc
aggcaagt
agtcttagtgccttgaaaataagatgaccagttgcagaagctaggccata
cccgagtgactgaagacccctatgtttgagccattcaagggggtcagtga
gtgctgagggaagcgagggaccatcatgagatgagtgtaatagcagaaat
gccagtgcccggtgtaagctgcgatcctgcctggccatggagacacaggg
aggtgagacttgttctcagcccaacctgtggctttcttcttctctctttc
ctttggcagagaaaaaagtgtgtgtgtgtgggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_51171577_51172439
seq2: B6Ng01-048A02.b_42_899

seq1  GAATTCTCTCTTACAGGTTGTCCTCTGATCTCTACCCTCATGAACAAGCA  50
      |||||||||||||||||||||| |||||||||||||||| ||||||||||
seq2  GAATTCTCTCTTACAGGTTGTCGTCTGATCTCTACCCTCCTGAACAAGCA  50

seq1  AAAAAATAAAAATAAAGAAATGTACTTTTTTTTTTTTAAAGACAAGATCT  100
      ||||||||||||||||||||||||||||||||||||| || |||||||||
seq2  AAAAAATAAAAATAAAGAAATGTACTTTTTTTTTTTTTAATACAAGATCT  100

seq1  CACTATATAGTCCTGGCTAGCCTGAAATTCTCTTTATAAACCAGGTTGGC  150
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CATTATATAGTCCTGGCTAGCCTGAAATTCTCTTTATAAACCAGATTGGC  150

seq1  TTCAAACTTACAGAGATTCATTTGCCCTTGCCACCTGGATGCTAGGATTA  200
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCGAACTTACAGAGATTCCTTTGCCCTTGCCACCTGGATGCTAGGATTA  200

seq1  AAGGCATGAACCCCACTATAGCCACCTAATGTCTTTTTTTGTGATGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATGAACCCCACTATAGCCACCTAATGTCTTTTTTTGTGATGAGGA  250

seq1  GCAGGGTCTTACTATGTAACCCTGGGTGGCCTGGAACTGGCTAGGTAGAC  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GCAGGGTCTTACTATGTAACCCTGGGTGGCCTGAAACTGGCTAGGTAGAC  300

seq1  TAGGCTAGCTTTGAACTGGAATTCTGCCCATCTCTGCCTCTCCAATGCTA  350
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTAGATTTGAACTGGAATTCTGCCCATCTCTGCCTCTCCAATGCTA  350

seq1  GGATGAAAGGTACACAAGATCAGAGTGCTCTCCTAACTGTTGGATCATCT  400
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  GGATGAAAGGTACACAAGATCATAGTGCTCTCCTAACTGTTGGATCCTCT  400

seq1  CACCACCCCTAGACAAAAGTAGTTTCTAAAAGAAGGCACACCCAGAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACCCCTAGACAAAAGTAGTTTCTAAAAGAAGGCACACCCAGAAGCT  450

seq1  ATAAGGCTATTGGATGGAAAATCCCGTATCAGAAGTGAATTGCTTCTGTG  500
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATAAGGCTATTGGATGGAAAATCCCGTATCATAAGTGAATTGCTTCTGTG  500

seq1  AGTTGTTGGCCCCCGAGGCTCTACATGCTGCAGAGATTATTGGCGCTGAT  550
      |||||||||||||||||||||||||||||||| | |||||||||||| ||
seq2  AGTTGTTGGCCCCCGAGGCTCTACATGCTGCATACATTATTGGCGCTCAT  550

seq1  GTTGGTTGTATGCCAGAACTAGATGTTAAGTTCCCATTGCAAAAGACAGT  600
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTGGTTGTATGCCACAACTAGATGTTAAGTTCCCATTGCAAAAGACAGT  600

seq1  ACCTGCTTTGGCAGCAGAGTGTGGAGAAATCCATGAGTCTGAGCTGGAGG  650
      ||||||||||||||| ||| ||||||||||| ||||||||||||||||||
seq2  ACCTGCTTTGGCAGCTGAGAGTGGAGAAATCTATGAGTCTGAGCTGGAGG  650

seq1  CTTCTTCTCCCCTGATTGATTTCCTAGTCCTGCAGGGCACTGGCTGCGGA  700
      | || |||||||||||||| |||||||||| ||  |||||||||||||||
seq2  CCTCATCTCCCCTGATTGAATTCCTAGTCCAGC-CGGCACTGGCTGCGGA  699

seq1  GCAAAGCTGGTTGTTGACAGTCCAGCTCAACAATGGACCCTGTGTGCTAC  750
       | ||||| | ||| |||  | || || ||| |||||| |||||||| ||
seq2  TC-AAGCTAGCTGTAGACGCTTCATCT-AACCATGGACTCTGTGTGC-AC  746

seq1  ACTACTGTCTTATTTAGGGTTTCTATACCACTATGATAAAACATCATGAC  800
      ||||||||||||||||||| |||||||||||| |||| ||||||||||||
seq2  ACTACTGTCTTATTTAGGGATTCTATACCACTCTGAT-AAACATCATGAC  795

seq1  CAAAAAGGACCTGGAAGGAAAGGGTTTATTTCATCAGACAGCTTGTAGTC  850
      ||||| ||||  ||||||||| ||||||||||||||||| | | ||||||
seq2  CAAAATGGACTCGGAAGGAAATGGTTTATTTCATCAGACTGTTCGTAGTC  845

seq1  CATCCAGGAAAGT  863
      |||||||| ||||
seq2  CATCCAGGCAAGT  858

seq1: chr3_51347222_51347512
seq2: B6Ng01-048A02.g_73_363 (reverse)

seq1  CCCCCCCCCCCCACACACACACACTTTTTTCTCTGCCAAAGGAAAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCACACACACACACTTTTTTCTCTGCCAAAGGAAAGAGAG  50

seq1  AAGAAGAAAGCCACAGGTTGGGCTGAGAACAAGTCTCACCTCCCTGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAAAGCCACAGGTTGGGCTGAGAACAAGTCTCACCTCCCTGTGTC  100

seq1  TCCATGGCCAGGCAGGATCGCAGCTTACACCGGGCACTGGCATTTCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGCCAGGCAGGATCGCAGCTTACACCGGGCACTGGCATTTCTGCT  150

seq1  ATTACACTCATCTCATGATGGTCCCTCGCTTCCCTCAGCACTCACTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACACTCATCTCATGATGGTCCCTCGCTTCCCTCAGCACTCACTGACC  200

seq1  CCCTTGAATGGCTCAAACATAGGGGTCTTCAGTCACTCGGGTATGGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGAATGGCTCAAACATAGGGGTCTTCAGTCACTCGGGTATGGCCTA  250

seq1  GCTTCTGCAACTGGTCATCTTATTTTCAAGGCACTAAGACT  291
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTGCAACTGGTCATCTTATTTTCAAGGCACTAAGACT  291