BAC Information

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BAC

Clone NameB6Ng01-048B13
Chromosome3 (Build37)
Map Location 48,740,426 - 48,741,552
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666202, LOC666208, 1700018B24Rik, LOC100039404
Downstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048B13.bB6Ng01-048B13.g
ACCDH872761DH872762
length1,1371,153
definitionDH872761|Mus musculus domesticus DNA, BAC clone: B6Ng01-048B13, 5' end.DH872762|Mus musculus domesticus DNA, BAC clone: B6Ng01-048B13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaaaggcagaggacaggtaccataggatgaggagatgagtggact
ggggtgtatgatgtgaaactgataaagaatcaattaaaaagttttttaat
agacagattaataaaataagggtaaacccaggaaccatccatctgtaaca
accaagaaacatctcaacatcaaggaaagacaaaagcccagcgtaaagaa
ttgaataaagatattccaagcaaacacacctaagaaacaaggtggcatag
ctatattttaagatctaacaaaatagacttcgaaattaattaaaagagtt
agagcaagacagtacagttttctttttcatcaaaggaaaaaaaatcacca
agatggtatttcaagcttgtgtggtgggaggtgtctttactcctagaact
tgggaggtataggcacacagattttctaattccatgccagcctggtctga
agagtgagttacaggatagtcagggatgctcagaaaaaaacaaacaagca
aaaacaaaaaacaaaaaacaaaaacaaaaacctgccctaggaggggggaa
gacaacatttcaattctttatatatatgacccaaatacaaggagatccat
gttgctaaaacaaacaaacaacaaactaaaccaaaacaaaacaaaataat
aaaaccctggtttaccttaaatcatatactgaccatcacacactgacagt
ggagtcttcaatacctattcttactagtggacaggccatcaagacaaaaa
cataaacagaaaaaggctggagctatttgatattagaaatgaaatgaaat
gaaatgaaatgagatgaaatgaaatgaaatgaaatgaaatgaaatgaaca
gatatttttagatgattctatccaaacacacaaaaaaaaggtaccttctt
ctaatcactcatggaactttctccaaattgatcaagggaattgagttaaa
gactagacacaaatctacatacacatgaacactagaattttataagaagt
agaaataagactgaaaagacagctttcaaatgtcacaggtcaaactgatg
tctaaatgttagattgcaaatagagcaacttattttctgcaaaatactca
gtctaagtgggtcaaagaatctcaaccaaacagatac
gaattctcacctgaggaatacggaatggcagagaagtacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatgtctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatccgtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagtcccaacaggtaagaaggacacatgctccactat
gttcgtagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaacatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcgtttgagactaggctggggcctagcaaca
cagaagtggatgctcacagtcagctaatggatggatcacagggctcccat
gaggagctagagaagtacccagagctaaggatctgcaccctataggtgga
tcacattatgactacagtacccgagctctgactctagctgcaatgtatca
aagatggcctagtcgcatccctgaaagaaggccattgacacgcaacttta
tggtccagagacgggaacgccaggccaaaaggggataggtggtggtaggg
att
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48740426_48741552
seq2: B6Ng01-048B13.b_77_1181

seq1  TGAGGAGATGAGTGGACTGGGGTGTATGATGTGAAACTGATAAAGAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGATGAGTGGACTGGGGTGTATGATGTGAAACTGATAAAGAATCA  50

seq1  ATTAAAAAGTTTTTTAATAGACAGATTAATAAAATAAGGGTAAACCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAGTTTTTTAATAGACAGATTAATAAAATAAGGGTAAACCCAGG  100

seq1  AACCATCCATCTGTAACAACCAAGAAACATCTCAACATCAAGGAAAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCCATCTGTAACAACCAAGAAACATCTCAACATCAAGGAAAGACA  150

seq1  AAAGCCCAGCGTAAAGAATTGAATAAAGATATTCCAAGCAAACACACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAGCGTAAAGAATTGAATAAAGATATTCCAAGCAAACACACCTA  200

seq1  AGAAACAAGGTGGCATAGCTATATTTTAAGATCTAACAAAATAGACTTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAAGGTGGCATAGCTATATTTTAAGATCTAACAAAATAGACTTCG  250

seq1  AAATTAATTAAAAGAGTTAGAGCAAGACAGTACAGTTTTCTTTTTCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATTAAAAGAGTTAGAGCAAGACAGTACAGTTTTCTTTTTCATCA  300

seq1  AAGGAAAAAAAATCACCAAGATGGTATTTCAAGCTTGTGTGGTGGGAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAAAAATCACCAAGATGGTATTTCAAGCTTGTGTGGTGGGAGGT  350

seq1  GTCTTTACTCCTAGAACTTGGGAGGTATAGGCACACAGATTTTCTAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTACTCCTAGAACTTGGGAGGTATAGGCACACAGATTTTCTAATTC  400

seq1  CATGCCAGCCTGGTCTGAAGAGTGAGTTACAGGATAGTCAGGGATGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCAGCCTGGTCTGAAGAGTGAGTTACAGGATAGTCAGGGATGCTCA  450

seq1  GAAAAAAACAAACAAGCAAAAACAAAAAACAAAAAACAAAAACAAAAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAACAAACAAGCAAAAACAAAAAACAAAAAACAAAAACAAAAACC  500

seq1  TGCCCTAGGAGGGGGGAAGACAACATTTCAATTCTTTATATATATGACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTAGGAGGGGGGAAGACAACATTTCAATTCTTTATATATATGACCC  550

seq1  AAATACAAGGAGATCCATGTTGCTAAAACAAACAAACAACAAACTAAACC  600
      |||||||||                  |||||||||||||||||||||||
seq2  AAATACAAGNNNNNNNNNNNNNNNNNNACAAACAAACAACAAACTAAACC  600

seq1  AAAACAAAACAAAATAATAAAACCCTGGTTTACCTTAAATCATATACTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAACAAAATAATAAAACCCTGGTTTACCTTAAATCATATACTGA  650

seq1  CCATCACACACTGACAGTGGGAGTCTTCAATACCTATTCTTACTAGTGGA  700
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCATCACACACTGACAGT-GGAGTCTTCAATACCTATTCTTACTAGTGGA  699

seq1  CAGGCCATCAAGACAAAAACATAAACAGAAAAAGGCTGGAGCTATTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCATCAAGACAAAAACATAAACAGAAAAAGGCTGGAGCTATTTGAT  749

seq1  ATTAGAAATGAAATGAAATGAAATGAAATGAGATGAAATGAAATGAAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAATGAAATGAAATGAAATGAAATGAGATGAAATGAAATGAAATG  799

seq1  AAATGAAATGAAATGAACAGATATTTTTAGATGATTCTATCCAAACACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAATGAAATGAACAGATATTTTTAGATGATTCTATCCAAACACAC  849

seq1  AAAAAAAAGGTACCTTCTTCTAATCACCTCATGGAACTTTCTCCAAAATT  900
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  AAAAAAAAGGTACCTTCTTCTAATCA-CTCATGGAACTTTCTCC-AAATT  897

seq1  GATCAAGGGAATTGAGTTAAAGACTAAGACACAAATCTACATACACATGA  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GATCAAGGGAATTGAGTTAAAGACT-AGACACAAATCTACATACACATGA  946

seq1  ACACTAGAATTTTATAAAGAAGTAAGAAATACAGACTGGAAAAAGGACAG  1000
      ||||||||||||||| ||||||| ||||||| ||||||   ||| |||||
seq2  ACACTAGAATTTTAT-AAGAAGT-AGAAATA-AGACTG---AAAAGACAG  990

seq1  CTTTTCAAAAATGTCACAGGTCAAACTGGATGTCTACATGTATAGGAATG  1050
      ||||    ||||||||||||||||||| |||||||| |||| || || ||
seq2  CTTT---CAAATGTCACAGGTCAAACT-GATGTCTAAATGT-TA-GATTG  1034

seq1  CAAATAGAGCCATACTTATTTCCCTGCAAAATACTCAAGTCTAAGTGGGT  1100
      ||||||||||   ||||||||  ||||||||||||| |||||||||||||
seq2  CAAATAGAGC--AACTTATTT-TCTGCAAAATACTC-AGTCTAAGTGGGT  1080

seq1  CAAAG-ATCTCAACACAAAACCAGATAC  1127
      ||||| |||||||| ||||  |||||||
seq2  CAAAGAATCTCAAC-CAAA--CAGATAC  1105