BAC Information

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BAC

Clone NameB6Ng01-048D04
Chromosome5 (Build37)3 (Build37)
Map Location 80,557,932 - 80,558,995149,470,191 - 149,470,260
singlet/doubletsingletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384, Lphn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048D04.bB6Ng01-048D04.g
ACCDH872829DH872830
length1,046978
definitionDH872829|Mus musculus domesticus DNA, BAC clone: B6Ng01-048D04, 5' end.DH872830|Mus musculus domesticus DNA, BAC clone: B6Ng01-048D04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,557,932 - 80,558,995)(149,470,191 - 149,470,260)
sequence
gaattcactttcttatttttattctagttttgattcaagtgtgtttttaa
taattaaataaaatataaaaatctaaggaagtgtagaaagaaactgctct
ttgctctcaaaaccaaatcttgtatacaggcacatacatattgattttag
actggatgtgttctgaagtagaaattgtcctgatttatatcttacataaa
aataagagaattaacattgtacatgaacatttcacaatattttgtaggtg
atatatcagttttctttccatattccaaaaatgaaggaatcaaatataga
aaaatgcttggcacttgcaaaattttctatttttccagtttttggctgat
tatatatttttccattaatatgcatacactgtagcaagttagtggcatta
tttttacatgaccatgaatgtaatttgatcataattttactatctattgc
tttaaaaagtccatctcctttcaaattcttacctgtatacctatatatac
ctaaacacatttttttctattttctttatgagagataaaccatttgataa
ttttctaaggatatagatagtttttttttcttaatattctttaattgaaa
atacatttgtttcattaaatgcattcttgaagaaatcacacatgtaacca
tatccaacacttcagaattgaatctaaaatgtcattcaagtaagcattga
aaaaaatgcttacttctgtgtgataggattgcgatgtaaaatactatagt
ttccttttgatcatgatgtttacctaagttgctcaaaattattgaatttc
atttatgaaagctgagatgtccaaatgcacttattttcagaatggttagg
actttttaagggatcgacatttacatagaactataattggacattgacat
ggagttttaataatctttgttttgcaatagcaataaatagttgcatactg
tgattgaaattggattggaatctataaaacttaagcattagcattctacc
acatatctctgacatcaacaatgagctctatgtctggatattatct
gaattcaaatcgatccatacttatctccttgtactaaggtcaaatctaag
tggatcaaggaacttcacataaaaccagagacactgaaacttatagagga
gaaagtggggaaaagccttgaagatatgggcacaggggaaaaattcctga
acagaacagcaatggcttgtgctgtaagatcgagaattgacaaatgggac
ctaatgaaactccaaagtttctgcaaggcaaaaacaccttcaataagaca
aaaagaccaccagcaaattgggaaaggatctttacctatcctaaatcaga
taggggactaatatccaacatatataaagaactcaagaaggtggacttca
gaaaatcaaataaccctattaaaaaatggggctcagacctgaacaaagaa
ttctcacctgaggaagaccaaatggcagagaagcacctgaaaaaatgttc
aacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattcc
acctcacaccagtcagaatggctaagatcaaaaattcaggtgacagcaga
tgctggcgtggatgtggagaaagaggaacactcctccattgttggtggga
ttgcaggcttgtacaaccactctggaaatccgtctggcggttcctcagaa
aattggacatagtactaccggaggatccagcaatacctcttttgggcatt
tatccagaagatgacccaactggtaaggacacatgctccactatcttcat
agcagccttatttacaatagccagaagctggaaagaacccagatgccctc
aacagaggaatggatacagcaaatgtggtacatctaaacaatggagtact
actcagctattaacagaatgaatttatgaattcctagccaaatggatgga
cctggaggcatcatcctgagtgaggtaacacattcacaaagactcacaca
tatgtactcactgatagtgatactagcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_80557932_80558995
seq2: B6Ng01-048D04.b_43_1088 (reverse)

seq1  AGATAATATCCAGACATAGAAGCTTCCAATGTTTGATGGTCAGAGAATAA  50
      ||||||||||||||||||| ||||  || || ||||| ||||||||   |
seq2  AGATAATATCCAGACATAG-AGCT--CATTG-TTGAT-GTCAGAGA--TA  43

seq1  TGTGGTAGAAATGCTTATTGCCTTAAAGTTTTTATAGATT-CAATACAAT  99
      |||||||| |||||| ||   |||||   ||||||||||| |||| ||||
seq2  TGTGGTAG-AATGCTAAT--GCTTAA--GTTTTATAGATTCCAATCCAAT  88

seq1  TTCAATCACAAGTTATGCAAACTATTTTATTGCTATTGCCAAAACAGAGA  149
      ||||||||||   ||||| ||||| ||||||||||||| ||||||| |||
seq2  TTCAATCACA--GTATGC-AACTA-TTTATTGCTATTG-CAAAACAAAGA  133

seq1  TTATTAAAACT-CATGTCAATGTCCAATTATGAGTTTCTATGTAAATGTC  198
      ||||||||||| ||||||||||||||||||| || |||||||||||||||
seq2  TTATTAAAACTCCATGTCAATGTCCAATTAT-AG-TTCTATGTAAATGTC  181

seq1  GATCCCCTTAAAAAGTCCTAACCATTCTGAAAATAAGTGCATTTGGACAT  248
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAT-CCCTTAAAAAGTCCTAACCATTCTGAAAATAAGTGCATTTGGACAT  230

seq1  CTCAGCTTTCATAAATGAAATTCAATAATTTTGAGCAACTTAGGTAAACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTTTCATAAATGAAATTCAATAATTTTGAGCAACTTAGGTAAACA  280

seq1  TCATGATCAAAAGGAAACTATAGTATTTTACATCGCAATCCTATCACACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATCAAAAGGAAACTATAGTATTTTACATCGCAATCCTATCACACA  330

seq1  GAAGTAAGCATTTTTTTCAATGCTTACTTGAATGACATTTTAGATTCAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGCATTTTTTTCAATGCTTACTTGAATGACATTTTAGATTCAAT  380

seq1  TCTGAAGTGTTGGATATGGTTACATGTGTGATTTCTTCAAGAATGCATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGTGTTGGATATGGTTACATGTGTGATTTCTTCAAGAATGCATTT  430

seq1  AATGAAACAAATGTATTTTCAATTAAAGAATATTAAGAAAAAAAAACTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACAAATGTATTTTCAATTAAAGAATATTAAGAAAAAAAAACTAT  480

seq1  CTATATCCTTAGAAAATTATCAAATGGTTTATCTCTCATAAAGAAAATAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCCTTAGAAAATTATCAAATGGTTTATCTCTCATAAAGAAAATAG  530

seq1  AAAAAAATGTGTTTAGGTATATATAGGTATACAGGTAAGAATTTGAAAGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATGTGTTTAGGTATATATAGGTATACAGGTAAGAATTTGAAAGG  580

seq1  AGATGGACTTTTTAAAGCAATAGATAGTAAAATTATGATCAAATTACATT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGACTTTTTAAAGCAATAGATAGTAAAATTATGATCAAATTACATT  630

seq1  CATGGTCATGTAAAAATAATGCCACTAACTTGCTACAGTGTATGCATATT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCATGTAAAAATAATGCCACTAACTTGCTACAGTGTATGCATATT  680

seq1  AATGGAAAAATATATAATCAGCCAAAAACTGGAAAAATAGAAAATTTTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAAAATATATAATCAGCCAAAAACTGGAAAAATAGAAAATTTTGC  730

seq1  AAGTGCCAAGCATTTTTCTATATTTGATTCCTTCATTTTTGGAATATGGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCAAGCATTTTTCTATATTTGATTCCTTCATTTTTGGAATATGGA  780

seq1  AAGAAAACTGATATATCACCTACAAAATATTGTGAAATGTTCATGTACAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAACTGATATATCACCTACAAAATATTGTGAAATGTTCATGTACAA  830

seq1  TGTTAATTCTCTTATTTTTATGTAAGATATAAATCAGGACAATTTCTACT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATTCTCTTATTTTTATGTAAGATATAAATCAGGACAATTTCTACT  880

seq1  TCAGAACACATCCAGTCTAAAATCAATATGTATGTGCCTGTATACAAGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACACATCCAGTCTAAAATCAATATGTATGTGCCTGTATACAAGAT  930

seq1  TTGGTTTTGAGAGCAAAGAGCAGTTTCTTTCTACACTTCCTTAGATTTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGAGAGCAAAGAGCAGTTTCTTTCTACACTTCCTTAGATTTTT  980

seq1  ATATTTTATTTAATTATTAAAAACACACTTGAATCAAAACTAGAATAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTTAATTATTAAAAACACACTTGAATCAAAACTAGAATAAAA  1030

seq1  ATAAGAAAGTGAATTC  1064
      ||||||||||||||||
seq2  ATAAGAAAGTGAATTC  1046

seq1: chr3_149470191_149470260
seq2: B6Ng01-048D04.g_968_1033 (reverse)

seq1  TATCAGTGAGTACATATTGTGTGAGTTCCTTTGTGATTGGGTTACCTCAC  50
      |||||||||||||||| |||||||||  |||||||| || ||||||||||
seq2  TATCAGTGAGTACATA-TGTGTGAGT--CTTTGTGAATGTGTTACCTCAC  47

seq1  TCAGGATGATGCCCTCCAGG  70
      ||||||||||| ||||||||
seq2  TCAGGATGATG-CCTCCAGG  66