BAC Information

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BAC

Clone NameB6Ng01-048K12
Chromosome3 (Build37)
Map Location 87,465,436 - 87,668,518
singlet/doubletdoublet
Overlap geneArhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc
Upstream geneLrba, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3, EG546801
Downstream geneHdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048K12.bB6Ng01-048K12.g
ACCDH873152DH873153
length1,046858
definitionDH873152|Mus musculus domesticus DNA, BAC clone: B6Ng01-048K12, 5' end.DH873153|Mus musculus domesticus DNA, BAC clone: B6Ng01-048K12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,465,436 - 87,466,506)(87,667,654 - 87,668,518)
sequence
gaattctttaaagtctgtagtgctagatatggaacttgagacctgtgcat
ctaggcaagctctctactacagagccccattcccccacccctcagtttgt
taagataggatttcactatgaagtcttggctggcttcaaactcaagatct
tcttgcctctacctcctgtatgctgggatcacaggtggatgcaccgtatg
gtcataatttaaatgtgaatacagagaaaacaacctttcctgagtttgcg
aaataagtttgttgaaataagttaagaacagatctgtgataaagtagata
ctgagggctcaagccagagaacaaaacatcggtgagacatttccccctgt
ggtgccaggaaatgaacccagggcctcgtgcatgctaggcaagtgcattt
tttcttagttacatccctagcttttgaaagcagtgtttatagaggtgtgt
acttgacactaaactgcttgggttcagctaccagctccgtgttacttact
gggtgcttgtaatcaagacagcctttcatagtcctgcttcctcagcataa
aatagtagaattgcatcccctcaggggacattatgagaattgaataggat
aaaaaagaatgagttgaaagttatggagtgccaggccctggcctgagcat
tttaaaggtgtgttttaaagtaaccccgtcttagagatcctgtgagatgg
tggtgccatcgtcatctctactttatggacaaggaagctgcagcaagaag
ttaaatcagctccttgaggttgcatagtcaataaaggtctggggcgttta
aagctgtggaagaagcctgtgcttatagtatgcttttctttcagtgagtg
cttgaagcagtctagctcctgcttcagcatttctgtgtgtttgacagcat
acgctcggcactgtgggtcggtcagtacaggtattgcagcagatttggct
cttatgttgcttatatagtagtggagatttgttcatatgtgaattaatgc
agctaactcaactcaataaagtatttgtttctgaaagatcattggg
gaattctttggccttttttttttcttttttctttttttcttttctttctt
tttttttttttttttttttttttttttttggagacagggttcctctgtgt
agccctggctgtcctggaactcactctgtaaaccaggctggcctcggaac
tcaaaaatctgcctgcctctgcctcccaagtgctgggattaaaggggtgt
gccaccccccccagcattctttggccttttgaggctcccttactatccac
cctattttctctttcttcatggattctttgggggggaatttgatgggggc
ataccaatccaatgagaaaaaaaagggggaaagaaaactgttgggtagtc
tgtttttgtctgtctttgagggtgaccttgaactcgtgtgtagccaagga
tcaccttgattctcccatttctgcctctagaatgctgagattacacatgt
gtgccatacagggctggggagatgaaccagggcttagtacacacttaacg
taagtacattagtgaatcacatccttctgaaagaatttttagaggagaaa
tcttacagtcccccccccccctttattttttgagacagggtcttgctagg
attctttttgcctcattgggcttaagaggtgggtacaaggttcctgtggg
ctaaacctcgtgggtttgagttttcttcaccattgtgaaaaaagggaagc
aattcccacaagctgttctctgatttctacccgtgtgccctgatctgagt
gggtgttggctttgtctctgtctctctcagtctctcctctcccacccaaa
taaatgcataaaaagaagtgactcaagtgacaccaatcaacagaaaccac
acttctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_87465436_87466506
seq2: B6Ng01-048K12.b_42_1087

seq1  GAATTCTTTAAAGTCTGTAGTGCTAGATATGGAACTTGAGACCTGTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAAGTCTGTAGTGCTAGATATGGAACTTGAGACCTGTGCAT  50

seq1  CTAGGCAAGCTCTCTACTACAGAGCCCCATTCCCCCACCCCTCAGTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAAGCTCTCTACTACAGAGCCCCATTCCCCCACCCCTCAGTTTGT  100

seq1  TAAGATAGGATTTCACTATGAAGTCTTGGCTGGCTTCAAACTCAAGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAGGATTTCACTATGAAGTCTTGGCTGGCTTCAAACTCAAGATCT  150

seq1  TCTTGCCTCTACCTCCTGTATGCTGGGATCACAGGTGGATGCACCGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCTCTACCTCCTGTATGCTGGGATCACAGGTGGATGCACCGTATG  200

seq1  GTCATAATTTAAATGTGAATACAGAGAAAACAACCTTTCCTGAGTTTGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAATTTAAATGTGAATACAGAGAAAACAACCTTTCCTGAGTTTGCG  250

seq1  AAATAAGTTTGTTGAAATAAGTTAAGAACAGATCTGTGATAAAGTAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTTTGTTGAAATAAGTTAAGAACAGATCTGTGATAAAGTAGATA  300

seq1  CTGAGGGCTCAAGCCAGAGAACAAAACATCGGTGAGACATTTCCCCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGCTCAAGCCAGAGAACAAAACATCGGTGAGACATTTCCCCCTGT  350

seq1  GGTGCCAGGAAATGAACCCAGGGCCTCGTGCATGCTAGGCAAGTGCATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAGGAAATGAACCCAGGGCCTCGTGCATGCTAGGCAAGTGCATTT  400

seq1  TTTCTTAGTTACATCCCTAGCTTTTGAAAGCAGTGTTTATAGAGGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGTTACATCCCTAGCTTTTGAAAGCAGTGTTTATAGAGGTGTGT  450

seq1  ACTTGACACTAAACTGCTTGGGTTCAGCTACCAGCTCCGTGTTACTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACACTAAACTGCTTGGGTTCAGCTACCAGCTCCGTGTTACTTACT  500

seq1  GGGTGCTTGTAATCAAGACAGCCTTTCATAGTCCTGCTTCCTCAGCATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCTTGTAATCAAGACAGCCTTTCATAGTCCTGCTTCCTCAGCATAA  550

seq1  AATAGTAGAATTGCATCCCCTCAGGGGACATTATGAGAATTGAATAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTAGAATTGCATCCCCTCAGGGGACATTATGAGAATTGAATAGGAT  600

seq1  AAAAAAGAATGAGTTGAAAGTTATGGAGTGCCAGGCCCTGGCCTGAGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAATGAGTTGAAAGTTATGGAGTGCCAGGCCCTGGCCTGAGCAT  650

seq1  TTTAAAGGTGTGTTTTAAAGTAACCCCGTCTTAGAGATCCTGTGAGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGTGTGTTTTAAAGTAACCCCGTCTTAGAGATCCTGTGAGATGG  700

seq1  TGGTGCCATCGTCATCTCTACTTTATGGACAAGGAAGCTGCAGCAAGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCATCGTCATCTCTACTTTATGGACAAGGAAGCTGCAGCAAGAAG  750

seq1  TTAAATCAGCTCCTTGAGGTTGCATAGTCAATAAAGGTCTGGGGCGTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCAGCTCCTTGAGGTTGCATAGTCAATAAAGGTCTGGGGCGTTTA  800

seq1  AAGCTGTGGAAGAAAGCCTGTGCTTATAGGTATGC-TTTCTTTCAGTGAG  849
      |||||||||||| ||||||||||||||| |||||| ||||||||||||||
seq2  AAGCTGTGGAAG-AAGCCTGTGCTTATA-GTATGCTTTTCTTTCAGTGAG  848

seq1  TGCTTGAAAGCAGTCTAGCTCCTGCTTCAGCATTTCTGTGTGTTTGACAA  899
      |||||| ||||||||||||||||||||||||||||||||||||||||| |
seq2  TGCTTG-AAGCAGTCTAGCTCCTGCTTCAGCATTTCTGTGTGTTTGAC-A  896

seq1  GCATACGCTCGGCACTGTGGGTCGGTCAGTACAGGGTATGGCAGGCAGGA  949
      ||||||||||||||||||||||||||||||||| ||||| ||| ||| ||
seq2  GCATACGCTCGGCACTGTGGGTCGGTCAGTACA-GGTATTGCA-GCA-GA  943

seq1  TTTGGGCTCTTTAATTGTTGCTTATATAGTTAGGTGGAGATATGTTCAAT  999
      ||| |||||||    |||||||||||||||   |||||||| ||||| ||
seq2  TTT-GGCTCTT---ATGTTGCTTATATAGT--AGTGGAGATTTGTTC-AT  986

seq1  ATTGTTGAAATAAATGCAGTATAAACTCAAAACTCAGTAAAAATTAATTT  1049
      | |||   ||| |||||||    |||||  ||||||  | ||| ||  ||
seq2  A-TGT--GAATTAATGCAG--CTAACTC--AACTCA--ATAAAGTA--TT  1025

seq1  TGTTTCTGAAAAGATCACTGGG  1071
      |||||||| |||||||| ||||
seq2  TGTTTCTG-AAAGATCATTGGG  1046

seq1: chr3_87667654_87668518
seq2: B6Ng01-048K12.g_67_924 (reverse)

seq1  TCAGAAGTTTGTTTGTTTTCTGTTTGATTTTGTTGTCACTTTGTGTCACT  50
      ||||||    || || |||||| ||||  ||| |||||| ||| ||||||
seq2  TCAGAA----GTGTGGTTTCTG-TTGA--TTGGTGTCAC-TTGAGTCACT  42

seq1  TCTTTTTTATTGCATTTTATTTGTGTGTGAGA-GAGAGACTGAGAGAGAC  99
      |||||||   |||| |||||||| ||| |||| |||||||||||||||||
seq2  TCTTTTT--ATGCA-TTTATTTGGGTGGGAGAGGAGAGACTGAGAGAGAC  89

seq1  AGAGACAAAGCCAACACACACTCAGATCAAGGCACACGGGTAGAAATCAG  149
      ||||||||||||||||| ||||||||||| ||||||||||||||||||||
seq2  AGAGACAAAGCCAACACCCACTCAGATCAGGGCACACGGGTAGAAATCAG  139

seq1  AGAACAGCTTGTGGGAATTGCTTCCCTTTTTTCACAAT-GTGAGTAAAAC  198
      |||||||||||||||||||||||||||||||||||||| ||||  |||||
seq2  AGAACAGCTTGTGGGAATTGCTTCCCTTTTTTCACAATGGTGAAGAAAAC  189

seq1  TCAAA-CCACGAGGCTTAG-CCACAGGAACCTTGTACCCACCTCCTAAGC  246
      ||||| |||||||| |||| |||||||||||||||||||||||| |||||
seq2  TCAAACCCACGAGGTTTAGCCCACAGGAACCTTGTACCCACCTCTTAAGC  239

seq1  CCAATGAAGCATAAAGAATCCTAGCAAGACCCTGTCTCAAAAAATAAAGG  296
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  CCAATGAGGCAAAAAGAATCCTAGCAAGACCCTGTCTCAAAAAATAAAGG  289

seq1  GGGGGGGGGGACTGTAAGATTTCTCCTCTAAAAATTCTTTCAGGAGGATG  346
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GGGGGGGGGGACTGTAAGATTTCTCCTCTAAAAATTCTTTCAGAAGGATG  339

seq1  TGATTCACTAATGTACTTACGTTAAGTGTGTACTAAGCCCTGGTTCATCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCACTAATGTACTTACGTTAAGTGTGTACTAAGCCCTGGTTCATCT  389

seq1  CCCCAGCCCTGTATGGCACACATGTGTAATCTCAGCATTCTAGAGGCAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCCCTGTATGGCACACATGTGTAATCTCAGCATTCTAGAGGCAGA  439

seq1  AATGGGAGAATCAAGGTGATCCTTGGCTACACACGAGTTCAAGGTCACCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGAATCAAGGTGATCCTTGGCTACACACGAGTTCAAGGTCACCC  489

seq1  TCAAAGACAGACAAAAACAGACTACCCAACAGTTCTCTTTCCACCTTTTC  546
      |||||||||||||||||||||||||||||||||| ||||||| |||||| 
seq2  TCAAAGACAGACAAAAACAGACTACCCAACAGTTTTCTTTCCCCCTTTTT  539

seq1  TTTCTCATTGGATTGGTATGCCACCATCAAATTCCACCCCAAAGAATCCA  596
      |||||||||||||||||||||| |||||||||||| ||||||||||||||
seq2  TTTCTCATTGGATTGGTATGCCCCCATCAAATTCCCCCCCAAAGAATCCA  589

seq1  TGAAGAAAGAGAAAATAGGGTGGATAGTAAGGGAGCCTCAAAAGGCCAAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAGAGAAAATAGGGTGGATAGTAAGGGAGCCTCAAAAGGCCAAA  639

seq1  GAATGCTGGGCGTGGTGGCACACGCCTTTAATCCCAGCACTTGGGAGGCA  696
      |||||||||| | |||||||||| ||||||||||||||||||||||||||
seq2  GAATGCTGGGGGGGGTGGCACACCCCTTTAATCCCAGCACTTGGGAGGCA  689

seq1  GAGGCAGGCAGATTTCTGAGTTCCGAGGCCAGCCTGGTCTACAGAGTGAG  746
      ||||||||||||||| |||||||||||||||||||||| |||||||||||
seq2  GAGGCAGGCAGATTTTTGAGTTCCGAGGCCAGCCTGGTTTACAGAGTGAG  739

seq1  TTCCAGGACAGCCAGGGCTACACAGAGGAACCCTGTCTCCAAAAAAAAAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGCCAGGGCTACACAGAGGAACCCTGTCTCCAAAAAAAAAA  789

seq1  AAAAAAAAAAAAAAAAAAAAAGAAAGAAAAGAAAAAAAGAAAAAAGAAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAGAAAGAAAAGAAAAAAAGAAAAAAGAAAA  839

seq1  AAAAAAGGCCAAAGAATTC  865
      |||||||||||||||||||
seq2  AAAAAAGGCCAAAGAATTC  858