BAC Information

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BAC

Clone NameB6Ng01-048L21
Chromosome3 (Build37)
Map Location 5,966,366 - 5,967,139
singlet/doubletsinglet
Overlap genenone
Upstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165
Downstream geneLOC100041193, EG620570, LOC100041214, LOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048L21.bB6Ng01-048L21.g
ACCDH873212DH873213
length1,173777
definitionDH873212|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L21, 5' end.DH873213|Mus musculus domesticus DNA, BAC clone: B6Ng01-048L21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
agcccaaacctaaacacaataaaagcaatctacaaaaaaccagtagccaa
tatcaaagtaactggtgagaagtttgaagccatctcactaaaatcaggga
ctagacaaagctgctactttctccctacctattctacatagtacttgaag
tcctagccagagcaattcaacaacaatagacataaagtggatacaaattg
ggaaggaagacatcaaaatatctctgtttgtagatgatatgatagtatat
ataagtgaccctaaaaattctaccagagaactcctaaacctgataaacaa
cttcagtgaggtagctggatataaagttaagtcaaacaagtcaattgcct
ttctcgacacaaaggataaacaggctgagaaagaaactagggaaacaact
cccttcacaagattcacaaataatataaaataccttggcgtgaatccaac
taaggaagtgaatgatctgtatgataagaacttcaagtctctaaagaaag
aaattaaagaagatctaagaagatggaaagatctgctaacctcatggatt
ggcaggatcaatatagtaaaaatggctgtcttacaaaagcaatctactgt
ttcaatgcaatccccatcaaaattccaactcaattcttcaacaaattaga
aagggcaatttgcaaattcatctggaataacagaaaacctagaatagtaa
actcttctcaaggataaaagaacctctggtggaatcgccatggctgacct
aaagctgtactacagagcaattgtaataaaaactgcattgtactggtata
acaacagaaaagtagcctaatggaattgaattgaaggcccagaaatgaac
ccacacacttatgatcactggatatttgacagggagctaaaccattcaat
ggaaaaagacagcatttcacaaatggtgctgggacactcatggctatcat
gcagagatgcgatgatcatctatctctgtactagtcagtatagagataga
ctcacataaaccagagaactgaagtatagagtgaagtgggaaaagctcga
aaatgccaggaaaatctgatagagacatgctggctgtaatggaatggaaa
tgactctaatgcaagctcgaagtcagactcaagacaggccctgcatggaa
gactttcatctatcgaagtgagc
gaattctttgtttagctctgagtcccaggggagcgggtgggggagcgtgt
gggggacttttgggatagcattggaaatgtaaatgaaataaatacctaat
taaaaaaaatactgatcatgtatcagagtgtgtacattttgagctaacat
tgcagccttcattatcatgattcagttttgcagaagcatttgagagctct
aatatttaggatgctgcttactgatttaattgtcatgagccgctggtaca
aactctcaggttttggctaattagtattaagttaagatctagtagtacca
atgccttgtcagcctacattcagtcttcatcacaagaacacgtgtaactc
aatgagctcatttacactcttttcaactataacatttatttaggcttctt
aagctacagacattttaaaatatttcttgagctacctttccagtagactt
ttacccatcatcatgctctttgttccttgaaaatccaaatggaaaaagtc
atcccattgtgatttattgtttgatatgtattatttgtttattagtgctt
aatatttgattatattttattggggtcttccattattttgctctttgagt
aaatgagatcttgaatttatgaaattagattttcttcagattcttgactg
ttccacaattttgtaatatgctgttgattatattttgtatggatagagat
tgatatgggagttctctgggcctttcaaagttcattgcttttcagaatta
tgtttattttacaatttgtgaaataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_5966366_5967139
seq2: B6Ng01-048L21.g_68_844 (reverse)

seq1  TTTATATCACAAATTGT-AAATAAACATAATTCTGAAAAAGCATTGAATC  49
      ||||| ||||||||||| ||||||||||||||||| ||||||| |||| |
seq2  TTTATTTCACAAATTGTAAAATAAACATAATTCTG-AAAAGCAATGAA-C  48

seq1  TTTGTAAAGCCCAGAGAACTACCATATCAATCTCTAT-CATACAAAATAT  98
      |||| || |||||||||||| |||||||||||||||| ||||||||||||
seq2  TTTGAAAGGCCCAGAGAACTCCCATATCAATCTCTATCCATACAAAATAT  98

seq1  AATCAACAGCATATTACAAAATTGTGGAACAGTCAAGAATCTGAAG-AAA  147
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AATCAACAGCATATTACAAAATTGTGGAACAGTCAAGAATCTGAAGAAAA  148

seq1  TCTAATTTCATAAATTCAAGATCTCATTTACTCAAAGAGCAAAATAATGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTCATAAATTCAAGATCTCATTTACTCAAAGAGCAAAATAATGG  198

seq1  AAGA-CCCAAT-AAATATAATCAAATATTAAGCACTAATAAACAAATAAT  245
      |||| |||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCCAATAAAATATAATCAAATATTAAGCACTAATAAACAAATAAT  248

seq1  ACATATCAAACAATAAATCACAATGGGATGACTTTTTCCATTTGGATTTT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATCAAACAATAAATCACAATGGGATGACTTTTTCCATTTGGATTTT  298

seq1  CAAGGAACAAAGAGCATGATGATGGGTAAAAGTCTACTGGAAAGGTAGCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAACAAAGAGCATGATGATGGGTAAAAGTCTACTGGAAAGGTAGCT  348

seq1  CAAGAAATATTTTAAAATGTCTGTAGCTTAAGAAGCCTAAATAAATGTTA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATATTTTAAAATGTCTGTAGCTTAAGAAGCCTAAATAAATGTTA  398

seq1  TAGTTGAAAAGAGTGTAAATGAGCTCATTGAGTTACACGTGTTCTTGTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGAAAAGAGTGTAAATGAGCTCATTGAGTTACACGTGTTCTTGTGA  448

seq1  TGAAGACTGAATGTAGGCTGACAAGGCATTGGTACTACTAGATCTTAACT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGACTGAATGTAGGCTGACAAGGCATTGGTACTACTAGATCTTAACT  498

seq1  TAATACTAATTAGCCAAAACCTGAGAGTTTGTACCAGCGGCTCATGACAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTAATTAGCCAAAACCTGAGAGTTTGTACCAGCGGCTCATGACAA  548

seq1  TTAAATCAGTAAGCAGCATCCTAAATATTAGAGCTCTCAAATGCTTCTGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATCAGTAAGCAGCATCCTAAATATTAGAGCTCTCAAATGCTTCTGC  598

seq1  AAAACTGAATCATGATAATGAAGGCTGCAATGTTAGCTCAAAATGTACAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAATCATGATAATGAAGGCTGCAATGTTAGCTCAAAATGTACAC  648

seq1  ACTCTGATACATGATCAGTATTTTTTTTAATTAGGTATTTATTTCATTTA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGATACATGATCAGTATTTTTTTTAATTAGGTATTTATTTCATTTA  698

seq1  CATTTCCAATGCTATCCCAAAAGTCCCCCACACGCTCCCCCACCCGCTCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCAATGCTATCCCAAAAGTCCCCCACACGCTCCCCCACCCGCTCC  748

seq1  CCTGGGACTCAGAGCTAAACAAAGAATTC  774
      |||||||||||||||||||||||||||||
seq2  CCTGGGACTCAGAGCTAAACAAAGAATTC  777