BAC Information

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BAC

Clone NameB6Ng01-048N11
Chromosome3 (Build37)
Map Location 149,578,359 - 149,711,376
singlet/doubletdoublet
Overlap genenone
Upstream geneLphn2, LOC100040368, LOC668893, EG381483, LOC100040620
Downstream geneLOC100040633, LOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048N11.bB6Ng01-048N11.g
ACCDH873280DH873281
length1,073875
definitionDH873280|Mus musculus domesticus DNA, BAC clone: B6Ng01-048N11, 5' end.DH873281|Mus musculus domesticus DNA, BAC clone: B6Ng01-048N11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,578,359 - 149,579,457)(149,710,861 - 149,711,376)
sequence
gaattctttaatctcatgtattcattatctttaaagaaatttcaactgtg
cccatctgtgtttcagtggtattcattaaatatcatatattcaaacataa
gattattatttatatatctaaatccaaattaaaccctcttcagatttgtt
tgtaactttgctcaagtcaaccaatacaccgaacattagtttcctaattt
cttttgaaagtggaaatagcatgacaaatacaaggtcacagggatttatg
tggcatatgagtaactctctgttgagctagtcacttgacttgtatgcctt
ggttatcagtatttcttctgatatataaataatatatgcgtaatagacaa
tataatattatgtgcacatatatttaatatagactatatatacatatatt
ataactcataaatgagagatggttgataagagaaatcagagaggaaatct
ggccagagatatttttatagcaattaaggagttacacaacagggagaaaa
attatcatctccatataacaaatttcaacattcagagaagaaaatgaata
atttgagactaaggattcagagcacaggatggagataattaaatagtctc
caatttttttttggcttatttgtaaaaaatataattggtaggatccaggg
aatttggttttctgtctaatattgttatcagttttatagaattgttttat
ttataaaattctttattgcattatagcaagatccgtgaatctcatgaaca
ccacaagtggatcttatacttccttctgtgagctgtgagaaattttctgg
gtatgaaatccatgattgtctcttctcaagtgcatggtcataattataac
tccaggagtcaaagtttgtttttctcacgatggtgcattttaagaaagtt
tatgaaataaaacacctcacatgctctgctttcttttactgtagagctat
atcacacagagtaaatctgatttttttttaagatttgactgaaaattatc
tgacatcaaatgatgtgccatttgatctgctacacagagtatctttatca
tacgtgagttctgaagcatcttg
gaattcttttttaatcaatttatttatttactcacatgacatacagattt
gctgctcgcctcccagatgcccctcacccagtcactctcctcactcctat
cttttcctctgagagtagagacatccacagtatacccccaccctggctca
tcaagtctgtggaaggctaggtacatcctctcccactgagtctggacaat
gcagagtatgttccatagataggcaactgtttttaggaatagcccctgct
ccagttgttagggaattcacatgaagatcaaggatacacataagctgtaa
aagcagggcatgggggggtacatcctgcccatgtatgctttttggttggt
ggtttagtctctgagaactcccaagggtcctgggtagttgactttgttgg
tattcctgtggattccctatgtcctttatggcgttcaatcctccccacaa
ctcttcaacaagacccttccaagctctatccaaaatttggctgtgggtct
cagtatttgtctgagtcatctgctgggtggagaatctcagaagacagcca
tgctagactcttatctgcaagcatagcagaaaaccattaatagtgtcagg
gatgggtgtttgcccatgggatgggtctcaagttgggctggccattggtt
ggccatttactcagtctctgttccttttcctgtctctgcatctcttggta
caggtcaaatttgtggtggaagttttaaagaatgagttggtgtatttatc
aatccaatgtggtttcctgtgtggctacaagaagtagccttttcaggttc
tatattcacactgccttgagtctcagcttaagttacctcattgattcctg
ggaaccttcttcctgccaaagtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_149578359_149579457
seq2: B6Ng01-048N11.b_48_1120

seq1  GAATTCTTTAATCTCATGTATTCATTATCTTTAAAGAAATTTCAACTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAATCTCATGTATTCATTATCTTTAAAGAAATTTCAACTGTG  50

seq1  CCCATCTGTGTTTCAGTGGTATTCATTAAATATCATATATTCAAACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCTGTGTTTCAGTGGTATTCATTAAATATCATATATTCAAACATAA  100

seq1  GATTATTATTTATATATCTAAATCCAAATTAAACCCTCTTCAGATTTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTATTTATATATCTAAATCCAAATTAAACCCTCTTCAGATTTGTT  150

seq1  TGTAACTTTGCTCAAGTCAACCAATACACCGAACATTAGTTTCCTAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTTGCTCAAGTCAACCAATACACCGAACATTAGTTTCCTAATTT  200

seq1  CTTTTGAAAGTGGAAATAGCATGACAAATACAAGGTCACAGGGATTTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAAAGTGGAAATAGCATGACAAATACAAGGTCACAGGGATTTATG  250

seq1  TGGCATATGAGTAACTCTCTGTTGAGCTAGTCACTTGACTTGTATGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATATGAGTAACTCTCTGTTGAGCTAGTCACTTGACTTGTATGCCTT  300

seq1  GGTTATCAGTATTTCTTCTGATATATAAATAATATATGCGTAATAGACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATCAGTATTTCTTCTGATATATAAATAATATATGCGTAATAGACAA  350

seq1  TATAATATTATGTGCACATATATTTAATATAGACTATATATACATATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATATTATGTGCACATATATTTAATATAGACTATATATACATATATT  400

seq1  ATAACTCATAAATGAGAGATGGTTGATAAGAGAAATCAGAGAGGAAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTCATAAATGAGAGATGGTTGATAAGAGAAATCAGAGAGGAAATCT  450

seq1  GGCCAGAGATATTTTTATAGCAATTAAGGAGTTACACAACAGGGAGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGATATTTTTATAGCAATTAAGGAGTTACACAACAGGGAGAAAA  500

seq1  ATTATCATCTCCATATAACAAATTTCAACATTCAGAGAAGAAAATGAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATCTCCATATAACAAATTTCAACATTCAGAGAAGAAAATGAATA  550

seq1  ATTTGAGACTAAGGATTCAGAGCACAGGATGGAGATAATTAAATAGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAGACTAAGGATTCAGAGCACAGGATGGAGATAATTAAATAGTCTC  600

seq1  CAATTTTTTTTTGGCTTATTTGTAAAAAATATAATTGGTAGGATCCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTTTTTGGCTTATTTGTAAAAAATATAATTGGTAGGATCCAGGG  650

seq1  AATTTGGTTTTCTGTCTAATATTGTTATCAGTTTTATAGAATTGTTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTTTTCTGTCTAATATTGTTATCAGTTTTATAGAATTGTTTTAT  700

seq1  TTATAAAATTCTTTATTGCATTATAGCAAGATCCGTGAATCTCATGAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAATTCTTTATTGCATTATAGCAAGATCCGTGAATCTCATGAACA  750

seq1  CCACAAGTGGATCTTATACTTCCTTCTGTGAGCTGTGAGAAATTTTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGTGGATCTTATACTTCCTTCTGTGAGCTGTGAGAAATTTTCTGG  800

seq1  GTATGAAATCCATGATTGTCTCTTCTCAAGTGCATGGTCATAATTATAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAATCCATGATTGTCTCTTCTCAAGTGCATGGTCATAATTATAAC  850

seq1  TCCAGGAGTCAAAGTTTGTTTTTCTCACGATGGTGCATTTTAAGAAAGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGTCAAAGTTTGTTTTTCTCACGATGGTGCATTTTAAGAAAGTT  900

seq1  TATGAAATAAAACACCTCACATGCTCTGCTTCCTTTTTACTGTAAGAGCC  950
      ||||||||||||||||||||||||||||||| | ||||||||| |||| |
seq2  TATGAAATAAAACACCTCACATGCTCTGCTTTC-TTTTACTGT-AGAG-C  947

seq1  TATATCACACAGGAGTAAATCTTGATTTTTTTTTTAAAGATTTTGACTGA  1000
      ||||||||||| ||||||||| ||||||||||||  |||| |||||||||
seq2  TATATCACACA-GAGTAAATC-TGATTTTTTTTT--AAGA-TTTGACTGA  992

seq1  AAAATTTATCCTGACATTCCAAATGATGTGCCATTTTGAATTCTGCTAAA  1050
      |||  |||| |||||||  |||||||||||||| |||||  ||||||| |
seq2  AAA--TTAT-CTGACAT--CAAATGATGTGCCA-TTTGA--TCTGCTACA  1034

seq1  CACAAGAGGTATTCTTTATCAATACGGGTGAAGTTCTGAAGGCATCTTG  1099
      || |    ||| |||||||| ||||| |   ||||||||| ||||||||
seq2  CAGA----GTA-TCTTTATC-ATACGTG---AGTTCTGAA-GCATCTTG  1073

seq1: chr3_149710861_149711376
seq2: B6Ng01-048N11.g_68_583 (reverse)

seq1  ACTCAGACAAATACTGAGACCCACAGCCAAATTTTGGATAGAGCTTGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGACAAATACTGAGACCCACAGCCAAATTTTGGATAGAGCTTGGAA  50

seq1  GGGTCTTGTTGAAGAGTTGTGGGGAGGATTGAACGCCATAAAGGACATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTGTTGAAGAGTTGTGGGGAGGATTGAACGCCATAAAGGACATAG  100

seq1  GGAATCCACAGGAATACCAACAAAGTCAACTACCCAGGACCCTTGGGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCACAGGAATACCAACAAAGTCAACTACCCAGGACCCTTGGGAGT  150

seq1  TCTCAGAGACTAAACCACCAACCAAAAAGCATACATGGGCAGGATGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAGACTAAACCACCAACCAAAAAGCATACATGGGCAGGATGTACC  200

seq1  CCCCCATGCCCTGCTTTTACAGCTTATGTGTATCCTTGATCTTCATGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATGCCCTGCTTTTACAGCTTATGTGTATCCTTGATCTTCATGTGA  250

seq1  ATTCCCTAACAACTGGAGCAGGGGCTATTCCTAAAAACAGTTGCCTATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTAACAACTGGAGCAGGGGCTATTCCTAAAAACAGTTGCCTATCT  300

seq1  ATGGAACATACTCTGCATTGTCCAGACTCAGTGGGAGAGGATGTACCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACATACTCTGCATTGTCCAGACTCAGTGGGAGAGGATGTACCTAG  350

seq1  CCTTCCACAGACTTGATGAGCCAGGGTGGGGGTATACTGTGGATGTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCACAGACTTGATGAGCCAGGGTGGGGGTATACTGTGGATGTCTCT  400

seq1  ACTCTCAGAGGAAAAGATAGGAGTGAGGAGAGTGACTGGGTGAGGGGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAGAGGAAAAGATAGGAGTGAGGAGAGTGACTGGGTGAGGGGCAT  450

seq1  CTGGGAGGCGAGCAGCAAATCTGTATGTCATGTGAGTAAATAAATAAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGGCGAGCAGCAAATCTGTATGTCATGTGAGTAAATAAATAAATT  500

seq1  GATTAAAAAAGAATTC  516
      ||||||||||||||||
seq2  GATTAAAAAAGAATTC  516