BAC Information

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BAC

Clone NameB6Ng01-048P17
Chromosome3 (Build37)
Map Location 16,723,133 - 16,869,536
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100038947, LOC622425, LOC664795, LOC381484, Ythdf3, LOC100040034
Downstream geneLOC100040059, EG383936, LOC622737, ENSMUSG00000074674, LOC100040120, Cypt12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048P17.bB6Ng01-048P17.g
ACCDH873377DH873378
length1381,039
definitionDH873377|Mus musculus domesticus DNA, BAC clone: B6Ng01-048P17, 5' end.DH873378|Mus musculus domesticus DNA, BAC clone: B6Ng01-048P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,869,399 - 16,869,536)(16,723,133 - 16,724,200)
sequence
attattgctgtagaagtttcatggaaattagaaaaatagtatggtagatt
tcagataaaatattattctctacatttgtaatttttaaaaaattatttgt
atgtatgtttatatgtgtgtgtgtgtgtgtgtgtgtat
gaattcccacttttagagaagtctggagggaaaattaattctggagtttt
atttttgtacactttttatttattttttttgtcttgaaattatttttttt
actagttaagtaaaaaaagggccatgataatcttctctgtatagttccaa
ttttagtatatgtgctgccaaagcaagcatgaaaatatttttcaaatatt
ctttactttgaaattttcatgtattatattttggtcatagtcacaccctc
gcacaactccccacagatctccctccttttcatacacacctaactttgta
tttctagaaacattttcctatatgaagttccctcttaagaaataatgtta
gcttttttcaaggtgacataaaacttcacagcataatgaacatgcacgtg
gaggacagaggataactttgtggtcactgtttccttcctttgaaacaggg
tatcttgctgatctggatctcaccaatcaaactagactggctgagcagtg
agttccaggaatttacctgataggtattataatttcttgtatatttgctc
gggtttaggaaatcatattcaggtcgtcttggctggaacagaagcactct
attaacccatcattcccttttcccttcatatcatcatcccttcattttct
catcttttcaaacacttcataccttcatttcccttcacctcatcccttca
tctcttcgtctctttgtctccttataacttcattctcatcttatcatcaa
attatttctggattattattctgatggaaaatttaaaatgtttgcaacta
tttttttgatgggaagaatatagaaatattttctttagaaaatatgtgga
attctgtgacttttcagtcatagcgctgtgtgagtatgagatggaggcta
cctgactcagtctggctgcatcagatggatctgagagtagaaagtaagcg
ttacagcaaacatgatggacacagataagtgctgcatttcactgagacca
tcacacctcatttccaaattttctgcaatttcatgctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_16869399_16869536
seq2: B6Ng01-048P17.b_52_189 (reverse)

seq1  ATACACACACACACACACACACACATATAAACATACATACAAATAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACACACACACACACATATAAACATACATACAAATAATTTT  50

seq1  TTAAAAATTACAAATGTAGAGAATAATATTTTATCTGAAATCTACCATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTACAAATGTAGAGAATAATATTTTATCTGAAATCTACCATAC  100

seq1  TATTTTTCTAATTTCCATGAAACTTCTACAGCAATAAT  138
      ||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTAATTTCCATGAAACTTCTACAGCAATAAT  138

seq1: chr3_16723133_16724200
seq2: B6Ng01-048P17.g_68_1106

seq1  GAATTCCCACTTTTAGAGAAGTCTGGAGGGAAAATTAATTCTGGAGTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACTTTTAGAGAAGTCTGGAGGGAAAATTAATTCTGGAGTTTT  50

seq1  ATTTTTGTACACTTTTTATTTATTTTTTTTGTCTTGAAATTATTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTACACTTTTTATTTATTTTTTTTGTCTTGAAATTATTTTTTTT  100

seq1  ACTAGTTAAGTAAAAAAAGGGCCATGATAATCTTCTCTGTATAGTTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTAAGTAAAAAAAGGGCCATGATAATCTTCTCTGTATAGTTCCAA  150

seq1  TTTTAGTATATGTGCTGCCAAAGCAAGCATGAAAATATTTTTCAAATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTATATGTGCTGCCAAAGCAAGCATGAAAATATTTTTCAAATATT  200

seq1  CTTTACTTTGAAATTTTCATGTATTATATTTTGGTCATAGTCACACCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACTTTGAAATTTTCATGTATTATATTTTGGTCATAGTCACACCCTC  250

seq1  GCACAACTCCCCACAGATCTCCCTCCTTTTCATACACACCTAACTTTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAACTCCCCACAGATCTCCCTCCTTTTCATACACACCTAACTTTGTA  300

seq1  TTTCTAGAAACATTTTCCTATATGAAGTTCCCTCTTAAGAAATAATGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGAAACATTTTCCTATATGAAGTTCCCTCTTAAGAAATAATGTTA  350

seq1  GCTTTTTTCAAGGTGACATAAAACTTCACAGCATAATGAACATGCACGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTTCAAGGTGACATAAAACTTCACAGCATAATGAACATGCACGTG  400

seq1  GAGGACAGAGGATAACTTTGTGGTCACTGTTTCCTTCCTTTGAAACAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAGAGGATAACTTTGTGGTCACTGTTTCCTTCCTTTGAAACAGGG  450

seq1  TATCTTGCTGATCTGGATCTCACCAATCAAACTAGACTGGCTGAGCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGCTGATCTGGATCTCACCAATCAAACTAGACTGGCTGAGCAGTG  500

seq1  AGTTCCAGGAATTTACCTGATAGGTATTATAATTTCTTGTATATTTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGAATTTACCTGATAGGTATTATAATTTCTTGTATATTTGCTC  550

seq1  GGGTTTAGGAAATCATATTCAGGTCGTCTTGGCTGGAACAGAAGCACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTAGGAAATCATATTCAGGTCGTCTTGGCTGGAACAGAAGCACTCT  600

seq1  ATTAACCCATCATTCCCTTTTCCCTTCATATCATCATCCCTTCATTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCCATCATTCCCTTTTCCCTTCATATCATCATCCCTTCATTTTCT  650

seq1  CATCTTTTCAAACACTTCATACCTTCATTTCCCTTCACCTCATCCCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTCAAACACTTCATACCTTCATTTCCCTTCACCTCATCCCTTCA  700

seq1  TCTCTTCGTCTCTTTGTCTCCTTATAACTTCATTCTCATCTTATCATCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCGTCTCTTTGTCTCCTTATAACTTCATTCTCATCTTATCATCAA  750

seq1  ATTATTTCTGGATTATTATTCTGATGGAAAATTTAAAATGTTTGCAACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTCTGGATTATTATTCTGATGGAAAATTTAAAATGTTTGCAACTA  800

seq1  TTTTTTTGATGGGAAGAATATAGAAATA-TTTCTTTAGAAAATATGTGGA  849
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTTTTTGATGGGAAGAATATAGAAATATTTTCTTTAGAAAATATGTGGA  850

seq1  ATTCTGTGACTTTTCAGTCATAGCGCTGTGTGAGTTATGAGAATGGAGGC  899
      |||||||||||||||||||||||||||||||||| |||||| ||||||||
seq2  ATTCTGTGACTTTTCAGTCATAGCGCTGTGTGAG-TATGAG-ATGGAGGC  898

seq1  TTACCTGACCTCAGTCTTGGCTGCATCAAGATGGATCTGGAGGAGTAAGA  949
       ||||||| ||||||| |||||||||| |||||||||||   |||| |||
seq2  -TACCTGA-CTCAGTC-TGGCTGCATC-AGATGGATCTG--AGAGT-AGA  941

seq1  AAGGTTAAAAGCGTTTACAGGCCAAACCATGATGGACACAGATATAGTGC  999
      |||     ||||| ||||||  |||| ||||||||||||||||| |||||
seq2  AAG----TAAGCG-TTACAG--CAAA-CATGATGGACACAGATA-AGTGC  982

seq1  TGCATTTCACACTGAAGACACAATCACACCCTCATTTCCAAAATATTTTT  1049
      ||||||||||      || || |||||| |||||||||||||    ||||
seq2  TGCATTTCAC-----TGAGACCATCACA-CCTCATTTCCAAA----TTTT  1022

seq1  CTTGCATTTTTCATGCTCA  1068
      | ||||  |||||||||||
seq2  C-TGCA-ATTTCATGCTCA  1039