BAC Information

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BAC

Clone NameB6Ng01-049C20
Chromosome3 (Build37)
Map Location 94,202,127 - 94,340,574
singlet/doubletdoublet
Overlap geneRorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27
Upstream geneRptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659
Downstream geneLOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049C20.bB6Ng01-049C20.g
ACCDH873515DH873516
length984941
definitionDH873515|Mus musculus domesticus DNA, BAC clone: B6Ng01-049C20, 5' end.DH873516|Mus musculus domesticus DNA, BAC clone: B6Ng01-049C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,202,127 - 94,203,125)(94,339,614 - 94,340,574)
sequence
gaattcatcccagctccagctgtcctctgtccctaagagaagcagaggac
cggatactaaccagccggaaaacccaaggaccagcacccgggaagatgcc
cttgacttcagtctctacgctatgaggaaggaaggcagcgccatcccctg
ctctgtacctgtgtgctgctgactccacatgatggagagactaggaacag
gacagggacctgtttctcctccatagtcttgctcagaatttctctcagtt
ttgtaaagctgcagactctcctaggaggtataagcagcagatgagaggga
gggaggttttttttttttttttttttttttttctctcaaaggaagggttt
agccaagtaaacataaatcccaacttgtgccattctttataaaacgattt
caaaggctggaagtgtatcgtgcctgcgtgcttgtacaagggtgcagggc
acacatgtcgggtgttgggagacttgaatgtgactgcctaggatacatgc
ttgccctgcagttttgtttctgtgtcaagccagcaatttatcttttttta
taagaattttagcacacacacatacacacacacaccgcccaagattctcc
ctcagctaagcaatccaccagggagactggtgctcagatacctgacacaa
gagaaatggcaagctaaactgaaggaaggtattctagactaagacttcca
acaaatgatacccacaggcccgttagatttagaaattgcacagaattgcc
ctgcatctaaaagactagaggctgtggaagcggtgtcccggaagctctct
agctccccagaaggaaccaggatgtcaaaaactctctcaagctttcccag
ttggcctcgtagcagaccctgctccagccctgggtccctcttcagtctcc
ccgaatcgatctcatccgaagtggcgctgctgcagccttctgttgcttta
ttatttatttgcacaacagggtgctgcaactcat
gaattctaggccagcctgggctgtagtgtgagaccccatctcaaaaaaaa
aaaaaaaaaaagaatgaaaaaaaaaaaagctaggagagttttggttgcta
acacttgggaggcaatgcaggtcaatttgagtttgggaccaaactatgta
caagttccaagctagtggctggcctcagactcatagagaactacctgtct
ctgcctccaagtgtccagtgctagcattaaaggtgtgtatctcccagctg
aaagatacttttataggatacagaactatgtatagtttaatgtttttctt
aattttttttttaaattataagaatgccacaccagcgttgggcgtgatga
tgcacgcctttaatcccagcattctggaggcagaggcaggcggatttctg
agtttgaggacagcctggtctacaaagtgagtttcaggacagccagggct
acacagagaaaccctatctagaaaaaacaaaagaaaaagaaagaaagaaa
gaaagaaagagagagagagagagagagagagagagagagagaaagaaagc
cagccagccagccacatcatgggctggtgagactggctcaaggggtaaat
gtgctcactgccaaacctgacacctgagtacaatacacagtttccacagg
gtagaagaagagaactgaatcctgaatgttgtcctttgaacctccctgca
catggctgcacatgtgtgtgcgcacacaaaccacacacacatatggctgc
acatgtgtgctcacacacaaccacacacacacgtagacttttgggtttac
atagtttgtgatgaaaagtttgctccgttattttttggtttttataaaat
atttaactccctctggctgtcttcagttttttctaatcttgattatgtag
tctagatggttttccagtatttatctgttaaggagctgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94202127_94203125
seq2: B6Ng01-049C20.b_41_1024

seq1  GAATTCATCCCAGCTCCAGCTGTCCTCTGTCCCTAAGAGAAGCAGAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCAGCTCCAGCTGTCCTCTGTCCCTAAGAGAAGCAGAGGAC  50

seq1  CGGATACTAACCAGCCGGAAAACCCAAGGACCAGCACCCGGGAAGATGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATACTAACCAGCCGGAAAACCCAAGGACCAGCACCCGGGAAGATGCC  100

seq1  CTTGACTTCAGTCTCTACGCTATGAGGAAGGAAGGCAGCGCCATCCCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTTCAGTCTCTACGCTATGAGGAAGGAAGGCAGCGCCATCCCCTG  150

seq1  CTCTGTACCTGTGTGCTGCTGACTCCACATGATGGAGAGACTAGGAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACCTGTGTGCTGCTGACTCCACATGATGGAGAGACTAGGAACAG  200

seq1  GACAGGGACCTGTTTCTCCTCCATAGTCTTGCTCAGAATTTCTCTCAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGGACCTGTTTCTCCTCCATAGTCTTGCTCAGAATTTCTCTCAGTT  250

seq1  TTGTAAAGCTGCAGACTCTCCTAGGAGGTATAAGCAGCAGATGAGAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAGCTGCAGACTCTCCTAGGAGGTATAAGCAGCAGATGAGAGGGA  300

seq1  GGGAGG-TTTTTTTTTTTTTTTTTTTTTTTTTCTCTCAGAGGAAGGGTTT  349
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  GGGAGGTTTTTTTTTTTTTTTTTTTTTTTTTTCTCTCAAAGGAAGGGTTT  350

seq1  AGCCAAGTAAACATAAATCCCAACTTGTGCCATTCTTTATAAAACGATTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGTAAACATAAATCCCAACTTGTGCCATTCTTTATAAAACGATTT  400

seq1  CAAAGGCTGGAAGTGTATCGTGCCTGCGTGCTTGTACAAGGGTGCAGGGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGCTGGAAGTGTATCGTGCCTGCGTGCTTGTACAAGGGTGCAGGGC  450

seq1  ACACATGTCGGGTGTTGGGAGACTTGAATGTGACTGCCTAGGATACATGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTCGGGTGTTGGGAGACTTGAATGTGACTGCCTAGGATACATGC  500

seq1  TTGCCCTGCAGTTTTGTTTCTGTGTCAAGCCAGCAATTTATC-TGTTTTA  548
      |||||||||||||||||||||||||||||||||||||||||| | |||||
seq2  TTGCCCTGCAGTTTTGTTTCTGTGTCAAGCCAGCAATTTATCTTTTTTTA  550

seq1  TAAGAATTTTAGCACACACACATACACACACACACCGCCCAAGATTCTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAATTTTAGCACACACACATACACACACACACCGCCCAAGATTCTCC  600

seq1  CTCAGCTAAGCAATCCACCAGGGAGACTGGTGCTCAGATACCTGACACAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTAAGCAATCCACCAGGGAGACTGGTGCTCAGATACCTGACACAA  650

seq1  GAGAAATGGCAAGCTAAACTGAAGGAAGGTATTCTAGACTAAGAACTTCC  698
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GAGAAATGGCAAGCTAAACTGAAGGAAGGTATTCTAGACTAAG-ACTTCC  699

seq1  AACAAATGATACCCACAGGCCCGTTTAGATTTAGAAATTGCACAGAATTG  748
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AACAAATGATACCCACAGGCCCG-TTAGATTTAGAAATTGCACAGAATTG  748

seq1  CCCTGCATCTAAAAGACTAGAGGCTGTGGAAGCGGTGTCCCGGGAGCTCT  798
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCCTGCATCTAAAAGACTAGAGGCTGTGGAAGCGGTGTCCCGGAAGCTCT  798

seq1  CTAGCTCCCCAGGAGGAACCAGGATGTC-AAAACTCTCTCAAGCTTCCCA  847
      |||||||||||| ||||||||||||||| ||||||||||||||||| || 
seq2  CTAGCTCCCCAGAAGGAACCAGGATGTCAAAAACTCTCTCAAGCTTTCCC  848

seq1  GGCTGTCTCCGTAGCAGACCCTGCCCCAGCCCTGGGTCCCCTCTTCAGTT  897
       | || |  ||||||||||||||| |||||||||||| ||||||||||| 
seq2  AGTTGGCCTCGTAGCAGACCCTGCTCCAGCCCTGGGT-CCCTCTTCAGT-  896

seq1  CCTCCCCCGATTCGATTCGTCATCCCGTAGTGGCGCTTGCTGCAGCCCTC  947
       || |||||| |||||   |||| ||| |||||||| |||||||||| ||
seq2  -CT-CCCCGAATCGAT--CTCAT-CCGAAGTGGCGC-TGCTGCAGCCTTC  940

seq1  CCTGGTTGCTTTATTTATTTATTTTGCACCAACAGGGTTGCTGCAGACTC  997
          ||||||||| ||||||| |||||| |||||||| ||||||| ||||
seq2  ---TGTTGCTTTA-TTATTTA-TTTGCA-CAACAGGG-TGCTGCA-ACTC  982

seq1  AT  999
      ||
seq2  AT  984

seq1: chr3_94339614_94340574
seq2: B6Ng01-049C20.g_66_1006 (reverse)

seq1  AATCAGCTTCCCTAAACAGGATAAATACTGAGAAAAACCATCTTAAGACT  50
      ||||||||  ||| |||| ||||||||||  | ||||||||||  |||| 
seq2  AATCAGCT--CCTTAACA-GATAAATACT--GGAAAACCATCT--AGAC-  42

seq1  TACATAAATCAAAGATTAAGAAAAAAACCTTGAAGACAGCCAGAGGGAGT  100
      ||||| |||| |||||| ||||||||    ||||||||||||||||||||
seq2  TACAT-AATC-AAGATT-AGAAAAAA---CTGAAGACAGCCAGAGGGAGT  86

seq1  TAAAATATTATATAAAAAAGACCAAAAAATAAACGGAGCAAACTTCTCAT  150
      | ||||||| |||||||   |||||||||| |||||||||||||| ||||
seq2  T-AAATATTTTATAAAA---ACCAAAAAAT-AACGGAGCAAACTTTTCAT  131

seq1  CACAAACTATGTAAA-CCAAAAGTCTACGTTGTGTGTGTGGTTTGTGTGT  199
      ||||||||||||||| ||||||||||||| ||||||||||| ||||||||
seq2  CACAAACTATGTAAACCCAAAAGTCTACG-TGTGTGTGTGG-TTGTGTGT  179

seq1  GAGCACACATGTGCAGCCATATGTGTGTGTGGTTTGTGTGCGCACACACA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACACATGTGCAGCCATATGTGTGTGTGGTTTGTGTGCGCACACACA  229

seq1  TGTGCAGCCATGTGCAGGGAGGTTCAAAGGACAACATTCAGGATTCAGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGCCATGTGCAGGGAGGTTCAAAGGACAACATTCAGGATTCAGTT  279

seq1  CTCTTCTTCTACCCTGTGGAAACTGTGTATTGTACTCAGGTGTCAGGTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTTCTACCCTGTGGAAACTGTGTATTGTACTCAGGTGTCAGGTTT  329

seq1  GGCAGTGAGCACATTTACCCCTTGAGCCAGTCTCACCAGCCCATGATGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGAGCACATTTACCCCTTGAGCCAGTCTCACCAGCCCATGATGTG  379

seq1  GCTGGCTGGCTGGCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGGCTGGCTTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  429

seq1  TCTCTTTCTTTCTTTCTTTCTTTCTTTTTCTTTTGTTTTTTCTAGATAGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTCTTTCTTTCTTTCTTTCTTTTTCTTTTGTTTTTTCTAGATAGG  479

seq1  GTTTCTCTGTGTAGCCCTGGCTGTCCTGAAACTCACTTTGTAGACCAGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTGTAGCCCTGGCTGTCCTGAAACTCACTTTGTAGACCAGGC  529

seq1  TGTCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCAGAATGCTGGGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCAGAATGCTGGGAT  579

seq1  TAAAGGCGTGCATCATCACGCCCAACGCTGGTGTGGCATTCTTATAATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCGTGCATCATCACGCCCAACGCTGGTGTGGCATTCTTATAATTT  629

seq1  AAAAAAAAAATTAAGAAAAACATTAAACTATACATAGTTCTGTATCCTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATTAAGAAAAACATTAAACTATACATAGTTCTGTATCCTAT  679

seq1  AAAAGTATCTTTCAGCTGGGAGATACACACCTTTAATGCTAGCACTGGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTATCTTTCAGCTGGGAGATACACACCTTTAATGCTAGCACTGGAC  729

seq1  ACTTGGAGGCAGAGACAGGTAGTTCTCTATGAGTCTGAGGCCAGCCACTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGGCAGAGACAGGTAGTTCTCTATGAGTCTGAGGCCAGCCACTA  779

seq1  GCTTGGAACTTGTACATAGTTTGGTCCCAAACTCAAATTGACCTGCATTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGAACTTGTACATAGTTTGGTCCCAAACTCAAATTGACCTGCATTG  829

seq1  CCTCCCAAGTGTTAGCAACCAAAACTCTCCTAGCTTTTTTTTTTTTCATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCAAGTGTTAGCAACCAAAACTCTCCTAGCTTTTTTTTTTTTCATT  879

seq1  CTTTTTTTTTTTTTTTTTTTGAGATGGGGTCTCACACTACAGCCCAGGCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTTTTTTTGAGATGGGGTCTCACACTACAGCCCAGGCT  929

seq1  GGCCTAGAATTC  961
      ||||||||||||
seq2  GGCCTAGAATTC  941