BAC Information

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BAC

Clone NameB6Ng01-049D20
Chromosome3 (Build37)
Map Location 126,349,000 - 126,458,797
singlet/doubletdoublet
Overlap geneCamk2d
Upstream geneNdst4, Ugt8a, Arsj
Downstream geneAnk2, LOC100043749, LOC100043361, LOC100043364, Larp7, 4930422G04Rik, Neurog2, Alpk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049D20.bB6Ng01-049D20.g
ACCDH873559DH873560
length1,0501,100
definitionDH873559|Mus musculus domesticus DNA, BAC clone: B6Ng01-049D20, 5' end.DH873560|Mus musculus domesticus DNA, BAC clone: B6Ng01-049D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(126,349,000 - 126,350,068)(126,457,669 - 126,458,797)
sequence
gaattcatcacttttttgtttacatctggatagcctttttcttttcttta
aaaaaaaaaaccttttatttatttacttttacactccagattttctgcac
cctctgactgttgcacatcccatacctcttccctgccccctgtctccatg
cggatgtcccccctcctacaccaccagacctctaaactccctggggcctc
cagtctctcgagggttaggtgcatcttctcagattgaacccagacctgcc
agtcctctgctatatatgtgttggggacctcatatcagctgtgtatgatg
cctggttggtggtccagtgtttgagagatctcggggttccaggttaattg
agactgttgctcctcctacagggtcaccctcctcctcctcagcttctttc
agcttttccctaagtcgaccacaggggtcagcagcttctctccattggtt
gggtataaatatctgcatctgattctttcagctgcttgttgggtctttcg
gagggcagtcatgataggtccctttttgtgagtactccatagcctcagta
atagtatcaggccttgggacctacccttgagctggatcccactttgggcc
tgtcgctgggccttcttttcctcaggctcctctccatctccatccctgta
attctttcaaacaggaacaattatgggtcagaattttgattgtaggatgg
caaccccatccctcacttgatggcctgtctttctgctggaggtgggttct
acaagttccctctccccattgtagggcattttagatgaacatttttttaa
gactaaaaatataccatcgaggcatttcacttcttgtaggaaattccaca
tattattctacttaaatataaatgtagctgtggatgagtagactttatat
cagatacattcaaagtatgtgtgtactatatgtttcatgtattagtagta
gtaaacactgatgactatcagagactacacctgaaaaggaagtatttatt
ctagcatataaatggaggaaagacactagaggctagttatttagcatgct

gaattcttgttattcccaccattttgaatattgcacaaaggtttctagaa
cagtgcactgccaaacttatactgtacaagggataacctgaaacaaagaa
aaacaaaacaaacaacctgggggcatgttgataaattcacacagactaag
tgaaggcaggagaaacaaggaattactcctcagagggtcagagtcccctt
caaggagaaggtgctgttccaggatggccccacagacaggaacagctggc
tgtgcagaaacaactggggaaacaggggtaaaagggaacaaaatgagtag
gattggagtctccaaagtctactactacagagtattctagaagctacttt
ctcccaaacgctatcagcttcccactttctaccaacaatctgtctggtgt
ggacaagtagctgagcttctgtacaaagttcattttcagcaccgtggttc
ctcacttatgtgaataaagaaggcttaagtcgatcaagacattgacagat
ttttttttttattgtagaagttcagagacaatgcttcctgaagaattgcc
tgtggggcaatttcatttttcagtatcaatcaagaggagcacttgtttta
ttcccaagcttttgattcagtcaaaaacaaattagtgatttagttactgt
tgctagaattgacgtttacacatctccaacttttccctgctgcagcctga
gtctgctgccgtccgtttacagtgcacacaatcagaaaatgtatttgttc
acttcagtgacacatgcatgtgcaagcacactacacacacctccttatta
atcgtaaaaaatcatatttcctctggtattttatgacttttactgactat
gaaagctcaatgaatttcaacaaacaaacaaacaaaaagcattgtaataa
tgcttcagtatttcaaatagtgaaaagagatgtgtctgaatgtcgatatt
tctgagtatgatctcttctagaaatgatgcatgacttctttaagtaagtc
atagagagcttatcatctttagaaataaaacgctaccatggataataaga
atcagctgagtacagcagccacatgccattactgtagaattacttcaagc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_126349000_126350068
seq2: B6Ng01-049D20.b_44_1093

seq1  GAATTCATCACTTTTTTGTTTACATCTGGATAGCCTTTTTCTTTTCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACTTTTTTGTTTACATCTGGATAGCCTTTTTCTTTTCTTTA  50

seq1  AAAAAAAAAACCTTTTATTTATTTACTTTTACACTCCAGATTTTCTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACCTTTTATTTATTTACTTTTACACTCCAGATTTTCTGCAC  100

seq1  CCTCTGACTGTTGCACATCCCATACCTCTTCCCTGCCCCCTGTCTCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACTGTTGCACATCCCATACCTCTTCCCTGCCCCCTGTCTCCATG  150

seq1  CGGATGTCCCCCCTCCTACACCACCAGACCTCTAAACTCCCTGGGGCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGTCCCCCCTCCTACACCACCAGACCTCTAAACTCCCTGGGGCCTC  200

seq1  CAGTCTCTCGAGGGTTAGGTGCATCTTCTCAGATTGAACCCAGACCTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTCGAGGGTTAGGTGCATCTTCTCAGATTGAACCCAGACCTGCC  250

seq1  AGTCCTCTGCTATATATGTGTTGGGGACCTCATATCAGCTGTGTATGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCTGCTATATATGTGTTGGGGACCTCATATCAGCTGTGTATGATG  300

seq1  CCTGGTTGGTGGTCCAGTGTTTGAGAGATCTCGGGGTTCCAGGTTAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTGGTGGTCCAGTGTTTGAGAGATCTCGGGGTTCCAGGTTAATTG  350

seq1  AGACTGTTGCTCCTCCTACAGGGTCACCCTCCTCCTCCTCAGCTTCTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTTGCTCCTCCTACAGGGTCACCCTCCTCCTCCTCAGCTTCTTTC  400

seq1  AGCTTTTCCCTAAGTCGACCACAGGGGTCAGCAGCTTCTCTCCATTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTCCCTAAGTCGACCACAGGGGTCAGCAGCTTCTCTCCATTGGTT  450

seq1  GGGTATAAATATCTGCATCTGATTCTTTCAGCTGCTTGTTGGGTCTTTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATAAATATCTGCATCTGATTCTTTCAGCTGCTTGTTGGGTCTTTCG  500

seq1  GAGGGCAGTCATGATAGGTCCCTTTTTGTGAGTACTCCATAGCCTCAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAGTCATGATAGGTCCCTTTTTGTGAGTACTCCATAGCCTCAGTA  550

seq1  ATAGTATCAGGCCTTGGGACCTACCCTTGAGCTGGATCCCACTTTGGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTATCAGGCCTTGGGACCTACCCTTGAGCTGGATCCCACTTTGGGCC  600

seq1  TGTCGCTGGGCCTTCTTTTCCTCAGGCTCCTCTCCATCTCCATCCCTGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCTGGGCCTTCTTTTCCTCAGGCTCCTCTCCATCTCCATCCCTGTA  650

seq1  ATTCTTTCAAACAGGAACAATTATGGGTCAGAATTTTGATTGTAGGATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCAAACAGGAACAATTATGGGTCAGAATTTTGATTGTAGGATGG  700

seq1  CAACCCCATCCCTCACTTGATGGCCTGTCTTTCTGCTGGAGGTGGGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCATCCCTCACTTGATGGCCTGTCTTTCTGCTGGAGGTGGGTTCT  750

seq1  ACAAGTTCCCTCTCCCCATTGTAGGGCATTTTAGATGAACATTTTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTTCCCTCTCCCCATTGTAGGGCATTTTAGATGAACATTTTTTTAA  800

seq1  GACTAAAAATATACCATCGAGGCATGTCACTTCTTGTAGGAAATTCCACA  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||| 
seq2  GACTAAAAATATACCATCGAGGCATTTCACTTCTTGTAGGAAATTCCAC-  849

seq1  ATATTATTCTAACTTAAATATAAATGTAGCTGTGGATGAAGTAGGACTTT  900
      |||||||||| ||||||||||||||||||||||||||| |||| ||||||
seq2  ATATTATTCT-ACTTAAATATAAATGTAGCTGTGGATG-AGTA-GACTTT  896

seq1  ATTATCAGGATACAATTCAAAAGTATGTGTGTTACTATAATTGTTTCATT  950
      | ||||| ||||| |||| |||||||||||| |||||||  ||||||| |
seq2  A-TATCA-GATAC-ATTC-AAAGTATGTGTG-TACTATA--TGTTTCA-T  938

seq1  GTTATTTAGTAGTAGTAAACACTGATGACTATCAGAGACTACACCTGAAA  1000
      ||   |||||||||||||||||||||||||||||||||||||||||||||
seq2  GT--ATTAGTAGTAGTAAACACTGATGACTATCAGAGACTACACCTGAAA  986

seq1  AGGAAAGTATTTATTCTAAGCATATTAAATGGAGAAAAGGACACTAGAGG  1050
      ||| ||||||||||||| |||||| ||||||||| ||| |||||||||||
seq2  AGG-AAGTATTTATTCT-AGCATA-TAAATGGAGGAAA-GACACTAGAGG  1032

seq1  CTAGTTTATATAGCATGCT  1069
      |||| |||| |||||||||
seq2  CTAG-TTATTTAGCATGCT  1050

seq1: chr3_126457669_126458797
seq2: B6Ng01-049D20.g_66_1165 (reverse)

seq1  GCTTGAAGTAAATCCTTAACAGTAATTGGCATGTGGCTTGCTGGTACTCA  50
      ||||||||||| ||    ||||||| ||||||||||| |||| |||||||
seq2  GCTTGAAGTAATTC---TACAGTAA-TGGCATGTGGC-TGCT-GTACTCA  44

seq1  GCTGATTCTTGATTTATCACTGGTAGCCGTTTTAATTTCTAAAGATGATA  100
      ||||||||||   |||||  |||||| |||||| ||||||||||||||| 
seq2  GCTGATTCTT--ATTATCCATGGTAG-CGTTTT-ATTTCTAAAGATGAT-  89

seq1  AAGCTCTCTATGACCTTTAACTTAAAAGAAGTCATGCATCATTTTCTTAG  150
      ||||||||||||||   | |||| ||||||||||||||||||||   |||
seq2  AAGCTCTCTATGAC---TTACTT-AAAGAAGTCATGCATCATTT--CTAG  133

seq1  AAGGAGATCCATAACTCAGAAATATCGACATTCAGACCAACCTTCTCTTT  200
      || ||||| ||| ||||||||||||||||||||||||    | |||||||
seq2  AA-GAGAT-CAT-ACTCAGAAATATCGACATTCAGAC---ACATCTCTTT  177

seq1  TCCAACTAATTTGAAATACTGAAGCATTATTACAATGCTTTTTTGTTTGT  250
      ||  ||| |||||||||||||||||||||||||||||| |||||||||||
seq2  TC--ACT-ATTTGAAATACTGAAGCATTATTACAATGC-TTTTTGTTTGT  223

seq1  TTGTTTGTTTGAAATTCATTGAGCCTTTCATAGTCAGTAAAAGTCATAAA  300
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  TTGTTTG-TTGAAATTCATTGAG-CTTTCATAGTCAGTAAAAGTCATAAA  271

seq1  ATACCAGAGGAAATATGATTTTTTACGATTAATAAGGAGGTGTGTGTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAGAGGAAATATGATTTTTTACGATTAATAAGGAGGTGTGTGTAGT  321

seq1  GTGCTTGCACATGCATGTGTCACTGAAGTGAACAAATACATTTTCTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGCACATGCATGTGTCACTGAAGTGAACAAATACATTTTCTGATT  371

seq1  GTGTGCACTGTAAACGGACGGCAGCAGACTCAGGCTGCAGCAGGGAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCACTGTAAACGGACGGCAGCAGACTCAGGCTGCAGCAGGGAAAAG  421

seq1  TTGGAGATGTGTAAACGTCAATTCTAGCAACAGTAACTAAATCACTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATGTGTAAACGTCAATTCTAGCAACAGTAACTAAATCACTAATT  471

seq1  TGTTTTTGACTGAATCAAAAGCTTGGGAATAAAACAAGTGCTCCTCTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGACTGAATCAAAAGCTTGGGAATAAAACAAGTGCTCCTCTTGA  521

seq1  TTGATACTGAAAAATGAAATTGCCCCACAGGCAATTCTTCAGGAAGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACTGAAAAATGAAATTGCCCCACAGGCAATTCTTCAGGAAGCATT  571

seq1  GTCTCTGAACTTCTACAATAAAAAAAAAAATCTGTCAATGTCTTGATCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTGAACTTCTACAATAAAAAAAAAAATCTGTCAATGTCTTGATCGA  621

seq1  CTTAAGCCTTCTTTATTCACATAAGTGAGGAACCACGGTGCTGAAAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCCTTCTTTATTCACATAAGTGAGGAACCACGGTGCTGAAAATGA  671

seq1  ACTTTGTACAGAAGCTCAGCTACTTGTCCACACCAGACAGATTGTTGGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTACAGAAGCTCAGCTACTTGTCCACACCAGACAGATTGTTGGTA  721

seq1  GAAAGTGGGAAGCTGATAGCGTTTGGGAGAAAGTAGCTTCTAGAATACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGGGAAGCTGATAGCGTTTGGGAGAAAGTAGCTTCTAGAATACTC  771

seq1  TGTAGTAGTAGACTTTGGAGACTCCAATCCTACTCATTTTGTTCCCTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAGTAGACTTTGGAGACTCCAATCCTACTCATTTTGTTCCCTTTT  821

seq1  ACCCCTGTTTCCCCAGTTGTTTCTGCACAGCCAGCTGTTCCTGTCTGTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGTTTCCCCAGTTGTTTCTGCACAGCCAGCTGTTCCTGTCTGTGG  871

seq1  GGCCATCCTGGAACAGCACCTTCTCCTTGAAGGGGACTCTGACCCTCTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATCCTGGAACAGCACCTTCTCCTTGAAGGGGACTCTGACCCTCTGA  921

seq1  GGAGTAATTCCTTGTTTCTCCTGCCTTCACTTAGTCTGTGTGAATTTATC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAATTCCTTGTTTCTCCTGCCTTCACTTAGTCTGTGTGAATTTATC  971

seq1  AACATGCCCCCAGGTTGTTTGTTTTGTTTTTCTTTGTTTCAGGTTATCCC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCCCCCAGGTTGTTTGTTTTGTTTTTCTTTGTTTCAGGTTATCCC  1021

seq1  TTGTACAGTATAAGTTTGGCAGTGCACTGTTCTAGAAACCTTTGTGCAAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGTATAAGTTTGGCAGTGCACTGTTCTAGAAACCTTTGTGCAAT  1071

seq1  ATTCAAAATGGTGGGAATAACAAGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  ATTCAAAATGGTGGGAATAACAAGAATTC  1100