BAC Information

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BAC

Clone NameB6Ng01-049E11
Chromosome3 (Build37)
Map Location 146,805,985 - 146,925,218
singlet/doubletdoublet
Overlap genePpia-ps3_1528.1
Upstream geneMcoln2, Edg7, Ssx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049E11.bB6Ng01-049E11.g
ACCDH873588DH873589
length279949
definitionDH873588|Mus musculus domesticus DNA, BAC clone: B6Ng01-049E11, 5' end.DH873589|Mus musculus domesticus DNA, BAC clone: B6Ng01-049E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,924,940 - 146,925,218)(146,805,985 - 146,806,933)
sequence
tgctctgaatgtgctccccatgccttggaaacgagttctagttaagcttt
ttagaactccagatatgagagctgtctaccttgtttctcccccacctcct
ccccatccagctatttccatgttcctcactcccttctaagttcatgacct
cttcttatttctgtcaagactaccagaaacctcaatgaggatgcgtttat
tcacagttcagatagtttgtctgcctcacagagcaagatttgataagtgg
caatctatgaggaggtgggggagggggag
gaattcaggagggagaaattggtcatttccatccccactcaactgataag
gggcggtcagtgagacacaatatgccccagatgattacaggtttgggctt
cgctggccacatgactcaacgaggccacaatttctgatcatctctcccct
caggggtagagagaaggaactgggaagcagttagtctggccctaattctg
aaacacaaggggaaattggttgatgatgtggagtgattgaatccctgggg
aaagtgtctttgccatgtcatcttccagcatcaagcacaaatgacaagac
agcccagtggcagtgatgtcctctgagcttcaggaggactggggtttaaa
aggggtggagaccagactgacatactcctacagcaagattctcaagggga
aaggtttaggaaaactggaatacaatgaaacctagcaatggtttgggttt
cactacgtggctttaaatgatctgagagagtaacaaaatgattacatggt
atcaagggtaattcagagaacaggaacttcagacaacctccgatttttta
aaaagagcgctttacaaccttttcaataaaagaagcctaatctatccaag
taatgttttcctcccagggatggtaacatttgtttagtcagagccccctg
cattgtttattctacattggttattttacagaatgaagcttgagattcag
agtgctaagcagaaggttaaatggtcgtagtgacacactcccacaccacc
acccttcaaattttggccactggctgtttttatattattggtgtctggga
agcattgattgatgttatgggcaggccttcttacatcccaactctcccct
actttcagccagaaaacttctcatggttataaacatgaggacatgtggtc
tttttacttctaaggtaattctactagaatgttgaccacgaaagtaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_146924940_146925218
seq2: B6Ng01-049E11.b_53_331 (reverse)

seq1  CTCCCCCTCCCCCACCTCCTCATAGATTGCCACTTATCAAATCTTGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCTCCCCCACCTCCTCATAGATTGCCACTTATCAAATCTTGCTCT  50

seq1  GTGAGGCAGACAAACTATCTGAACTGTGAATAAACGCATCCTCATTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGCAGACAAACTATCTGAACTGTGAATAAACGCATCCTCATTGAGG  100

seq1  TTTCTGGTAGTCTTGACAGAAATAAGAAGAGGTCATGAACTTAGAAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGTAGTCTTGACAGAAATAAGAAGAGGTCATGAACTTAGAAGGGA  150

seq1  GTGAGGAACATGGAAATAGCTGGATGGGGAGGAGGTGGGGGAGAAACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAACATGGAAATAGCTGGATGGGGAGGAGGTGGGGGAGAAACAAG  200

seq1  GTAGACAGCTCTCATATCTGGAGTTCTAAAAAGCTTAACTAGAACTCGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAGCTCTCATATCTGGAGTTCTAAAAAGCTTAACTAGAACTCGTT  250

seq1  TCCAAGGCATGGGGAGCACATTCAGAGCA  279
      |||||||||||||||||||||||||||||
seq2  TCCAAGGCATGGGGAGCACATTCAGAGCA  279

seq1: chr3_146805985_146806933
seq2: B6Ng01-049E11.g_67_1015

seq1  GAATTCAGGAGGGAGAAATTGGTCATTTCCATCCCCACTCAACTGATAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAGGGAGAAATTGGTCATTTCCATCCCCACTCAACTGATAAG  50

seq1  GGGCGGTCAGTGAGACACAATATGCCCCAGATGATTACAGGTTTGGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGGTCAGTGAGACACAATATGCCCCAGATGATTACAGGTTTGGGCTT  100

seq1  CGCTGGCCACATGACTCAACGAGGCCACAATTTCTGATCATCTCTCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGCCACATGACTCAACGAGGCCACAATTTCTGATCATCTCTCCCCT  150

seq1  CAGGGGTAGAGAGAAGGAACTGGGAAGCAGTTAGTCTGGCCCTAATTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTAGAGAGAAGGAACTGGGAAGCAGTTAGTCTGGCCCTAATTCTG  200

seq1  AAACACAAGGGGAAATTGGTTGATGATGTGGAGTGATTGAATCCCTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAGGGGAAATTGGTTGATGATGTGGAGTGATTGAATCCCTGGGG  250

seq1  AAAGTGTCTTTGCCATGTCATCTTCCAGCATCAAGCACAAATGACAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTCTTTGCCATGTCATCTTCCAGCATCAAGCACAAATGACAAGAC  300

seq1  AGCCCAGTGGCAGTGATGTCCTCTGAGCTTCAGGAGGACTGGGGTTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGTGGCAGTGATGTCCTCTGAGCTTCAGGAGGACTGGGGTTTAAA  350

seq1  AGGGGTGGAGACCAGACTGACATACTCCTACAGCAAGATTCTCAAGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGGAGACCAGACTGACATACTCCTACAGCAAGATTCTCAAGGGGA  400

seq1  AAGGTTTAGGAAAACTGGAATACAATGAAACCTAGCAATGGTTTGGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTAGGAAAACTGGAATACAATGAAACCTAGCAATGGTTTGGGTTT  450

seq1  CACTACGTGGCTTTAAATGATCTGAGAGAGTAACAAAATGATTACATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACGTGGCTTTAAATGATCTGAGAGAGTAACAAAATGATTACATGGT  500

seq1  ATCAAGGGTAATTCAGAGAACAGGAACTTCAGACAACCTCCGA-TTTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATCAAGGGTAATTCAGAGAACAGGAACTTCAGACAACCTCCGATTTTTTA  550

seq1  AAAAGAGCGC-TTACAACC-TTTCAATAAAAGAAGCCTAATCTATCCAAG  597
      |||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  AAAAGAGCGCTTTACAACCTTTTCAATAAAAGAAGCCTAATCTATCCAAG  600

seq1  TAAATGTTTCCTCC--AGGATGGTAACATTTGTTTAGTCAGAGCCCCCTG  645
      |||   ||||||||   |||||||||||||||||||||||||||||||||
seq2  TAATGTTTTCCTCCCAGGGATGGTAACATTTGTTTAGTCAGAGCCCCCTG  650

seq1  CATTGTTTATTCTACATTGGTTATTTTACAGAATGAAGCTTGAGATTCAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTATTCTACATTGGTTATTTTACAGAATGAAGCTTGAGATTCAG  700

seq1  AGTGCTAAGCAGAAGGTTAAAT-GTCGTAGTGACACACTCCCACACCACC  744
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGTGCTAAGCAGAAGGTTAAATGGTCGTAGTGACACACTCCCACACCACC  750

seq1  A-CCTTCAAATTTTGGCCACTTGCTGGTTTTATATAATTGGTGTCTGGTA  793
      | ||||||||||||||||||| |||| |||||||| |||||||||||| |
seq2  ACCCTTCAAATTTTGGCCACTGGCTGTTTTTATATTATTGGTGTCTGGGA  800

seq1  AGCATTGATTGATGTTATGGGCAGGCCCTTCTTACATCCCAACTCTCCCC  843
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGCATTGATTGATGTTATGGGCAGG-CCTTCTTACATCCCAACTCTCCCC  849

seq1  TACTTTCAGCCAAGAAGAACTCTCCATGGTTTATAAACATGAGGACCATG  893
      ||||||||||| |||| ||||   ||||| ||||||||||||||| ||||
seq2  TACTTTCAGCC-AGAA-AACTTCTCATGG-TTATAAACATGAGGA-CATG  895

seq1  T-GTCTTTTAACTTCTAAAGGTAATTCTACTAAGATGTTTGACCACCAGA  942
      | ||||||| |||||| |||||||||||||||  ||| |||||||| | |
seq2  TGGTCTTTTTACTTCT-AAGGTAATTCTACTAGAATG-TTGACCACGA-A  942

seq1  AGTACCC  949
      |||||||
seq2  AGTACCC  949