BAC Information

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BAC

Clone NameB6Ng01-049E19
Chromosome3 (Build37)
Map Location 36,762,603 - 36,887,660
singlet/doubletdoublet
Overlap gene4932438A13Rik
Upstream geneLOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2, Bbs7, Trpc3
Downstream geneTenr, LOC652987, Il2, Il21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049E19.bB6Ng01-049E19.g
ACCDH873604DH873605
length968958
definitionDH873604|Mus musculus domesticus DNA, BAC clone: B6Ng01-049E19, 5' end.DH873605|Mus musculus domesticus DNA, BAC clone: B6Ng01-049E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,886,690 - 36,887,660)(36,762,603 - 36,763,583)
sequence
gaattccatactgctttatccaccgacttaaacatttaattttattttgg
aatttctgaaactggggtatattttacaagcaatttcatctgacagcatt
atttcccttgtgatacatatctatggagcgtattcaaacagatgctatcc
tagatttcatgaactatcacaccttctgtgaccattttagaaataaatgg
cacattttgattactttagggaaattttatatccagtaatagaatttttg
tgaagttcttaatttttaaaaaaggtactaaagtgaatactagattataa
atttctatagtggcaatgaggaaaagcaaatattgtacaactttcatttt
tcttgaattttcaaatattagaaacacatttctttcagcaaagcaacatt
aaagtattagaaaagtgttatacctttcattttttccttaagggtgaaac
tgccatggatcctcttcagttctgattccattgtcagaccaccaatatct
gcctctaggtgtgtgcggttcaccatgccaatcccaaacacaattaatgt
tacatgctgaggttcagaggttaccagactacgtttcctctgtgttttag
tcaagctgttgttgtcttgttcattctcaaacacaactctacatgttggc
tctgtaggactccgaacacctttttagtaaatggagatatatggtttgag
atttgaaaaaacacagcacaaagaacattctaaatactgtgctagctttc
ttggtttcaaagtctaaagtagacttttccctcgtagatgactcaattaa
ttttcaacatcttctctaatacctactgaagtaaatgatcaatctagata
cttgaaattaagtttgtctgaatctttaaaagcagtctttgtcaggtcag
gaggaagtatgctgacagaatattctgatgtcagcactattttctctttg
tggatgtaccatttctat
gaattcttgtaaatttcctctgagcagtcatgggttctggaacggagaaa
gtaggtttcaggtggtttcgcgttgctgctttcatcccgtgcatgacaac
gaagcagatttaatctgacaagtataaaagtggatgagttagtcagaata
tttgacttagcaatgactgctatgtgctattttaatatgcgctcatacag
tttgtaacaaaaaggtgaagcctttccccactttgtagctgagaaccttg
gaacagaactgtttcaaacctgactttctcactttatggcccctcagtta
gcatgccaccccccccccattactcaaatgccttaaaagtttgcaaggca
agtgccctgtgataaaatgtgccaggtgcccagagtagagaggaaatgaa
ggcacagttctttccagcagactcggtgtcagtagaaacattctttcaag
gctgcacttttaagtgtgcctcgcaggtagaacgtcaccattagcatcct
gactcctacctcgtggactcctatgtttcttttacatataaagtggttct
taaattattttagtcttatttgaggtgtaggaatgtaacattggaccaaa
tactgaagagtttcctggtgtgtttaaataatttagtttgaaacggttgc
tctaccaacaaagttaggataccttttctaattgattgatatgctggtct
tttcagacttgttaagatgaagcgctgcagaagaccttcagagaggaaga
taaacacattgaagattaaaaactaaacaaataaacaagaatctgtgtaa
gtatttctgcctagattaaaaaaatctaatttcttattaagtcagataga
gaaagtaactttatgcttcatttgtgattcagtcatctgtgaccacaatc
attccatctgcattttggactgctggtacctgatacctgatgatattact
caagtgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_36886690_36887660
seq2: B6Ng01-049E19.b_47_1014 (reverse)

seq1  ATAGAAATTGGTA-GTCACCAAAGAGAAAATAGTGCTGACATTCAG-ATA  48
      ||||||| |||||  ||  |||||||||||||||||||||| |||| |||
seq2  ATAGAAA-TGGTACATCCACAAAGAGAAAATAGTGCTGACA-TCAGAATA  48

seq1  TTCTGTCAGCATACTTCCTCCTTGACCCTGACATAGACTGCTTTTAAAGG  98
      ||||||||||||||||||||| ||| ||||||| |||||||||||||| |
seq2  TTCTGTCAGCATACTTCCTCC-TGA-CCTGACAAAGACTGCTTTTAAA-G  95

seq1  ATTCAGACAAACTTAATTTCAAGTATCTAGATTGATCATTTACTTCAGTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGACAAACTTAATTTCAAGTATCTAGATTGATCATTTACTTCAGTA  145

seq1  GGTATTAGAGAAGATGTTGAAAATTAATTGAGTCATCTACGAGGGAAAAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTAGAGAAGATGTTGAAAATTAATTGAGTCATCTACGAGGGAAAAG  195

seq1  TCTACTTTAGACTTTGAAACCAAGAAAGCTAGCACAGTATTTAGAATGTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTTAGACTTTGAAACCAAGAAAGCTAGCACAGTATTTAGAATGTT  245

seq1  CTTTGTGCTGTGTTTTTTCAAATCTCAAACCATATATCTCCATTTACTAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGCTGTGTTTTTTCAAATCTCAAACCATATATCTCCATTTACTAA  295

seq1  AAAGGTGTTCGGAGTCCTACAGAGCCAACATGTAGAGTTGTGTTTGAGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTTCGGAGTCCTACAGAGCCAACATGTAGAGTTGTGTTTGAGAA  345

seq1  TGAACAAGACAACAACAGCTTGACTAAAACACAGAGGAAACGTAGTCTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAGACAACAACAGCTTGACTAAAACACAGAGGAAACGTAGTCTGG  395

seq1  TAACCTCTGAACCTCAGCATGTAACATTAATTGTGTTTGGGATTGGCATG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTCTGAACCTCAGCATGTAACATTAATTGTGTTTGGGATTGGCATG  445

seq1  GTGAACCGCACACACCTAGAGGCAGATATTGGTGGTCTGACAATGGAATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCGCACACACCTAGAGGCAGATATTGGTGGTCTGACAATGGAATC  495

seq1  AGAACTGAAGAGGATCCATGGCAGTTTCACCCTTAAGGAAAAAATGAAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAAGAGGATCCATGGCAGTTTCACCCTTAAGGAAAAAATGAAAG  545

seq1  GTATAACACTTTTCTAATACTTTAATGTTGCTTTGCTGAAAGAAATGTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAACACTTTTCTAATACTTTAATGTTGCTTTGCTGAAAGAAATGTGT  595

seq1  TTCTAATATTTGAAAATTCAAGAAAAATGAAAGTTGTACAATATTTGCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATATTTGAAAATTCAAGAAAAATGAAAGTTGTACAATATTTGCTT  645

seq1  TTCCTCATTGCCACTATAGAAATTTATAATCTAGTATTCACTTTAGTACC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATTGCCACTATAGAAATTTATAATCTAGTATTCACTTTAGTACC  695

seq1  TTTTTTAAAAATTAAGAACTTCACAAAAATTCTATTACTGGATATAAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAATTAAGAACTTCACAAAAATTCTATTACTGGATATAAAAT  745

seq1  TTCCCTAAAGTAATCAAAATGTGCCATTTATTTCTAAAATGGTCACAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAAAGTAATCAAAATGTGCCATTTATTTCTAAAATGGTCACAGAA  795

seq1  GGTGTGATAGTTCATGAAATCTAGGATAGCATCTGTTTGAATACGCTCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGATAGTTCATGAAATCTAGGATAGCATCTGTTTGAATACGCTCCA  845

seq1  TAGATATGTATCACAAGGGAAATAATGCTGTCAGATGAAATTGCTTGTAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATGTATCACAAGGGAAATAATGCTGTCAGATGAAATTGCTTGTAA  895

seq1  AATATACCCCAGTTTCAGAAATTCCAAAATAAAATTAAATGTTTAAGTCG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACCCCAGTTTCAGAAATTCCAAAATAAAATTAAATGTTTAAGTCG  945

seq1  GTGGATAAAGCAGTATGGAATTC  971
      |||||||||||||||||||||||
seq2  GTGGATAAAGCAGTATGGAATTC  968

seq1: chr3_36762603_36763583
seq2: B6Ng01-049E19.g_69_1026

seq1  GAATTCTTGTAAATTTCCTCTGAGCAGTCATGGGTTCTGGAACGGAGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTAAATTTCCTCTGAGCAGTCATGGGTTCTGGAACGGAGAAA  50

seq1  GTAGGTTTCAGGTGGTTTCGCGTTGCTGCTTTCATCCCGTGCATGACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTTCAGGTGGTTTCGCGTTGCTGCTTTCATCCCGTGCATGACAAC  100

seq1  GAAGCAGATTTAATCTGACAAGTATAAAAGTGGATGAGTTAGTCAGAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGATTTAATCTGACAAGTATAAAAGTGGATGAGTTAGTCAGAATA  150

seq1  TTTGACTTAGCAATGACTGCTATGTGCTATTTTAATATGCGCTCATACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTAGCAATGACTGCTATGTGCTATTTTAATATGCGCTCATACAG  200

seq1  TTTGTAACAAAAAGGTGAAGCCTTTCCCCACTTTGTAGCTGAGAACCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAACAAAAAGGTGAAGCCTTTCCCCACTTTGTAGCTGAGAACCTTG  250

seq1  GAACAGAACTGTTTCAAACCTGACTTTCTCACTTTATGGCCCCTCAGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAACTGTTTCAAACCTGACTTTCTCACTTTATGGCCCCTCAGTTA  300

seq1  GCATGCCACCCCCCCCCCATTACTCAAATGCCTTAAAAGTTTGCAAGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCACCCCCCCCCCATTACTCAAATGCCTTAAAAGTTTGCAAGGCA  350

seq1  AGTGCCCTGTGATAAAATGTGCCAGGTGCCCAGAGTAGAGAGGAAATGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCCTGTGATAAAATGTGCCAGGTGCCCAGAGTAGAGAGGAAATGAA  400

seq1  GGCACAGTTCTTTCCAGCAGACTCGGTGTCAGTAGAAACATTCTTTCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGTTCTTTCCAGCAGACTCGGTGTCAGTAGAAACATTCTTTCAAG  450

seq1  GCTGCACTTTTAAGTGTGCCTCGCAGGTAGAACGTCACCATTAGCATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACTTTTAAGTGTGCCTCGCAGGTAGAACGTCACCATTAGCATCCT  500

seq1  GACTCCTACCTCGTGGACTCCTATGTTTCTTTTACATATAAAGTGGTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTACCTCGTGGACTCCTATGTTTCTTTTACATATAAAGTGGTTCT  550

seq1  TAAATTATTTTAGTCTTATTTGAGGTGTAGGAATGTAACATTGGACCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATTTTAGTCTTATTTGAGGTGTAGGAATGTAACATTGGACCAAA  600

seq1  TACTGAAGAGTTTCCTGGTGTGTTTAAATAATTTAGTTTGAAACGGTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAAGAGTTTCCTGGTGTGTTTAAATAATTTAGTTTGAAACGGTTGC  650

seq1  TCTACCAACAAAGTTAGGATACCTTTTCTAATTGATTGATATGCTGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAACAAAGTTAGGATACCTTTTCTAATTGATTGATATGCTGGTCT  700

seq1  TTTCAGACTTGTTAAGATGAAGCGCTGCAGAAGGACCTTCAGAAGAGGAA  750
      |||||||||||||||||||||||||||||||| ||||||||| ||||| |
seq2  TTTCAGACTTGTTAAGATGAAGCGCTGCAGAA-GACCTTCAG-AGAGG-A  747

seq1  AGATAAACAACATTGAAGATTAAAAAACTAAACAAAATAAAACAAGAAAT  800
      |||||||| |||||||||||| ||||||||||||||   ||||||| |||
seq2  AGATAAAC-ACATTGAAGATT-AAAAACTAAACAAA--TAAACAAG-AAT  792

seq1  CTTGTGTAAGTATTTCTGCCTAAGATTTAAAAAAAATCTAATTTCTTATT  850
      | ||||||||||||||||||| |||||  |||||||||||||||||||||
seq2  C-TGTGTAAGTATTTCTGCCT-AGATT--AAAAAAATCTAATTTCTTATT  838

seq1  AAAGTCCAGATAGAGAAAAGTTAACTTTATGCTTCATTTGTGATTCAGTC  900
       |||| ||||||||||||   |||||||||||||||||||||||||||| 
seq2  -AAGT-CAGATAGAGAAA--GTAACTTTATGCTTCATTTGTGATTCAGT-  883

seq1  CATCTGTGACCCACAAATCATTCCATCTGCATTTTGGACTGCTGATACCT  950
      ||||||||| |||| ||||||||||||||||||||||||||||| |||||
seq2  CATCTGTGA-CCAC-AATCATTCCATCTGCATTTTGGACTGCTGGTACCT  931

seq1  GGATACCTGATTGATAATTAACTCAAGTGCT  981
       ||||||||| |||||  | |||||||||||
seq2  -GATACCTGA-TGATA--TTACTCAAGTGCT  958