BAC Information

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BAC

Clone NameB6Ng01-049F24
Chromosome3 (Build37)12 (Build37)
Map Location 41,059,126 - 41,059,73763,640,021 - 63,641,064
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049F24.bB6Ng01-049F24.g
ACCDH873656DH873657
length9551,055
definitionDH873656|Mus musculus domesticus DNA, BAC clone: B6Ng01-049F24, 5' end.DH873657|Mus musculus domesticus DNA, BAC clone: B6Ng01-049F24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,126 - 41,059,737)(63,640,021 - 63,641,064)
sequence
gaattctttgtttagctcttagccccatttttaatggggttatttgattt
tctggagtccaccctcttgagttctttatatatattggatattattcctc
tatctgatttagtataggtaaagatcctttcccaatctgttgttggcctt
tttgtcttattgatggtgtcttttgccttgcagaagctttgcagtttcat
gaggtcccatttgtcaattctcgatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatcttcgaggctttccccactt
tctcctctataattttcagtgtctctggttttatgtggcgttccttgatc
cacttagatttgaccttagtacaaggagataggaatggatcgattcacat
tcttctacaagataaccaccagttgtgccaacaccatttgttgaaaatgc
tgtctttcttccactggatggttttagctcccttgtcgaagatcaagtga
ccatagttgagtgggttcatttctgggtcttcagttctattccattggtc
tacttgtctgtcactataccagtaccatgcagtttttatcacaattgctc
tgtagtaaagctacattttttttgttgtttttttaatgacaatagaaaag
tcataggtaaaccccatttcctcataaaattgaaattaatatataatatt
aaaatgtgaataattgaaaaccatattattactgcaagtatggtcataaa
gaatgaatttagtgtataaataataaataaactgagatcatttatttttt
tataatatgaagacacattgttgattcttttaaagagattttacaagaga
atgttacacatatctttcaaaaagtcaaagagataattttaaaactaatt
gtaacctacttctactaccatagatacatagataccaaagctagacataa
tttac
gaattctccttaatagggacggggtttcgttctctctctctcttgcttct
tgcactctggctcctgaagatgtaagcaataaagctttgccgcagaagat
tctggtttgttgcgtctttcctggccggtcgtgagaacgcgtctaataac
agatgcagctagcctggccttaaatttctatttacagatacttttgagta
attagaattacaggcagaagctagcatgcccaaggttaaggacaatcagg
tttaaacacaatgaaggctcatgaacctagcaccacaactgccatcagac
accatactgtgatttttattttatttttcttattcaaatgtaacttatat
tctttttggttccaggataatttcttaaccatcatgaggaaaatgtcagt
ttttcaattccagaaatgcaatgcctgacagttacggtcaattctagaaa
ttttagttttataatcttgctagttttctcagtaatttcgttgtaagaag
aaactattcaagtatttatgactatttgttacttccatgagtgatagatt
tattcaatgaaaatattttaacattttaactgtatatatatatatatata
tatatatatatatatatatattacattaaaatgtacatacttatatttga
aataacctataagtatcttagggcaaaagcatattaacctctttattatg
aaattttttattaattttatggtagggtttgtaatgtaaattacatcact
tttccatttttttaatttaatttaatttttaatttatttttttacacccc
gtattccatttccctttttccgcatccaccctcctaatgctttacattcc
acatctcctcctcaccgcacgctgtctccacatggaaacccccatctgcc
atcccacctgacctctaaacttccttggggcctccaggtcccttgagggt
taggtgcatcatccactgagtgaacacagacccggaagtccatctactgt
atgtggtattggaaagccctcaaacacttggtgatatgctgtcctagttt
gatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059126_41059737
seq2: B6Ng01-049F24.b_44_654 (reverse)

seq1  AGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGT  50

seq1  GACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCC  100
      |||||||||| ||||||||||||||||| ||||||| |||||| ||| ||
seq2  GACAGACAAGTAGACCAATGGAATAGAACTGAAGACCCAGAAATGAACCC  100

seq1  ACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGT  150
      || || ||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAACTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGT  150

seq1  GGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTA  200
      |||| |||||||||||||||||||||||||| ||||||||||||| ||||
seq2  GGAAGAAAGACAGCATTTTCAACAAATGGTGTTGGCACAACTGGTGGTTA  200

seq1  TCATGTAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGT  250
      || |||||||||||| |||| |||||| ||||||||||||||||||||||
seq2  TCTTGTAGAAGAATGTGAATCGATCCATTCCTATCTCCTTGTACTAAGGT  250

seq1  CAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAAATCTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAAA  300

seq1  TTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAA  350
      |||||||||||||||||||| ||||||| |||||||||| ||||||||||
seq2  TTATAGAGGAGAAAGTGGGG-AAAGCCTCGAAGATATGGGCACAGGGGAA  349

seq1  AAATTCCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGA  400
      ||||||||| |||||||||||||||||||||||||||||| |||||| ||
seq2  AAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATTGA  399

seq1  CAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCA  449

seq1  TCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTAT  499
      ||||||||||||||||| || |||||||||||||||||||||||||||||
seq2  TCAATAAGACAAAAAGGCCAACAACAGATTGGGAAAGGATCTTTACCTAT  499

seq1  CCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAA  549
       ||||||||||||| ||| ||||||||||||||||| |||||||||||| 
seq2  ACTAAATCAGATAGAGGAATAATATCCAATATATATAAAGAACTCAAGAG  549

seq1  GGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGC  599
      |||||| |||||||||||||||||||||||| |||||||||||| |||||
seq2  GGTGGACTCCAGAAAATCAAATAACCCCATT-AAAAATGGGGCTAAGAGC  598

seq1  TAAACAAAGAATT  612
      |||||||||||||
seq2  TAAACAAAGAATT  611

seq1: chr12_63640021_63641064
seq2: B6Ng01-049F24.g_67_1121

seq1  GAATTCTCCTTAATAGGGACGGGGTTTCGTTCTCTCTCTCTCTTGCTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTAATAGGGACGGGGTTTCGTTCTCTCTCTCTCTTGCTTCT  50

seq1  TGCACTCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTGCCGCAGAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCTGGCTCCTGAAGATGTAAGCAATAAAGCTTTGCCGCAGAAGAT  100

seq1  TCTGGTTTGTTGCGTCTTTCCTGGCCGGTCGTGAGAACGCGTCTAATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTTGTTGCGTCTTTCCTGGCCGGTCGTGAGAACGCGTCTAATAAC  150

seq1  AGATGCAGCTAGCCTGGCCTTAAATTTCTATTTACAGATACTTTTGAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCAGCTAGCCTGGCCTTAAATTTCTATTTACAGATACTTTTGAGTA  200

seq1  ATTAGAATTACAGGCAGAAGCTAGCATGCCCAAGGTTAAGGACAATCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATTACAGGCAGAAGCTAGCATGCCCAAGGTTAAGGACAATCAGG  250

seq1  TTTAAACACAATGAAGGCTCATGAACCTAGCACCACAACTGCCATCAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACACAATGAAGGCTCATGAACCTAGCACCACAACTGCCATCAGAC  300

seq1  ACCATACTGTGATTTTTATTTTATTTTTCTTATTCAAATGTAACTTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACTGTGATTTTTATTTTATTTTTCTTATTCAAATGTAACTTATAT  350

seq1  TCTTTTTGGTTCCAGGATAATTTCTTAACCATCATGAGGAAAATGTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGGTTCCAGGATAATTTCTTAACCATCATGAGGAAAATGTCAGT  400

seq1  TTTTCAATTCCAGAAATGCAATGCCTGACAGTTACGGTCAATTCTAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATTCCAGAAATGCAATGCCTGACAGTTACGGTCAATTCTAGAAA  450

seq1  TTTTAGTTTTATAATCTTGCTAGTTTTCTCAGTAATTTCGTTGTAAGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTTTATAATCTTGCTAGTTTTCTCAGTAATTTCGTTGTAAGAAG  500

seq1  AAACTATTCAAGTATTTATGACTATTTGTTACTTCCATGAGTGATAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTCAAGTATTTATGACTATTTGTTACTTCCATGAGTGATAGATT  550

seq1  TATTCAATGAAAATATTTTAACATTTTAACTGTATATATATATATATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATGAAAATATTTTAACATTTTAACTGTATATATATATATATATA  600

seq1  TATATATATATATATATATATTACATTAAAATGTACATACTTATATTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATATATTACATTAAAATGTACATACTTATATTTGA  650

seq1  AATAACCTATAAGTATCTTAGGGCAAAAGCATATTAACCTCTTTATTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCTATAAGTATCTTAGGGCAAAAGCATATTAACCTCTTTATTATG  700

seq1  AAATTTTTTATTAATTTTATGGTAGGGTTTGTAATGT-AATTACATCACT  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAATTTTTTATTAATTTTATGGTAGGGTTTGTAATGTAAATTACATCACT  750

seq1  TTTCCATTTTTTTAATTTAATTTAATTTTTAATTTATTTTTTTACACCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTTTTTTAATTTAATTTAATTTTTAATTTATTTTTTTACACCCC  800

seq1  GTATTCCATTTCCC-TTTTCCGCATCCACCCTCCTAATGCTTTACATTCC  848
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GTATTCCATTTCCCTTTTTCCGCATCCACCCTCCTAATGCTTTACATTCC  850

seq1  ACATCTCCTCCTCACCGCACGCTGTCTCCACATGGATACCCCCATCTGCC  898
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACATCTCCTCCTCACCGCACGCTGTCTCCACATGGAAACCCCCATCTGCC  900

seq1  ATCCCACCTGACCTCTAAAC-TCCTTGGGGCCTCCA-GTCCCTTGAGGGT  946
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  ATCCCACCTGACCTCTAAACTTCCTTGGGGCCTCCAGGTCCCTTGAGGGT  950

seq1  TAGGTGCATCAT-CACTGAGTGAACACAGACCCGGAAGT-CATCTACTGT  994
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  TAGGTGCATCATCCACTGAGTGAACACAGACCCGGAAGTCCATCTACTGT  1000

seq1  ATGT-GTATTGGAA--GCCTCAAATCAGCTGGTG-TATGCTGTC--TGTT  1038
      |||| |||||||||   ||||||| ||  ||||| |||||||||   |||
seq2  ATGTGGTATTGGAAAGCCCTCAAA-CACTTGGTGATATGCTGTCCTAGTT  1049

seq1  TGATGG  1044
      ||||||
seq2  TGATGG  1055