BAC Information

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BAC

Clone NameB6Ng01-049H07
Chromosome3 (Build37)
Map Location 13,829,527 - 13,954,828
singlet/doubletdoublet
Overlap gene0710005M24Rik
Upstream geneEG668033, LOC668037, LOC100039823, LOC100039861, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049H07.bB6Ng01-049H07.g
ACCDH873713DH873714
length1,013906
definitionDH873713|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H07, 5' end.DH873714|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,829,527 - 13,830,547)(13,953,920 - 13,954,828)
sequence
gaattctttctgtagaataagtgggtctcaaactcagatatctgcctcat
tcctcctcctgagtactgggattaaaggattgtactactatttcctgtct
aactgtagttttgagaagttagcagcatctaggattcaagccctttactt
tttgaagcatagtgaaatgagttgtgttaaattactttcaatcaatctca
gtccaggaatatacatcataaatgtagacaatggaaaatgggtttatcag
ctagcactgcttttatagaacttccaccagctacacttctgccaacctat
gtttttaaaggtatgtttttgataatattacctgtttgacaggtatggga
aatgatataaaatttattggcaaatatcatggttttctgtgtttgtaaca
atgaatctgtgtgctatctctagcttcaaaatggaaatatttatttcagt
acaagtgaatcttattaaaacaatcttgtttgtgaagatttctgtgatta
aataaaagtacaatgattattaaaatgttttgcaaaatttgaaagcatta
taaattataaatatttactaatggctttaaaatcatctacctaaaaatag
actttcctagaacttttcttgaagacataattaagctagaggagtttgaa
aaacccaacattcctaaaataaataataaaagctctaatagtatttatga
actttattcttcaacaaatgcctatagagtaatatgacaagcatccatct
acacctcatgccacagacatctgtatggtttcaacctttaacttgaaaga
cactaactgctgtagtgtggaatacacttgaaagatgaagagcagaaatg
acaaacccatgcctgctacccctccattcaattacttttgtgaatcagat
cacattcatacgaagttaaatgaaagttctgtttctcggaaccatcagcg
gatgatgctccatgaacaccaatatatctatgattgcagcatagcagtgc
tacttgaatcacg
gaattctagacatatttctgacattaagcagacattacataagtgggata
gaaaacaagcatatatcagtgtaccaacatatttaccacagaaataatcc
acatatttatggttaacagattttgacaaaggtgccaagaacacacaaat
gatagaggacaatttctttaataaacaatgttaggaaaactgaatttatg
tcaaaaatgaaacaagatatttatgtcttgagacttttatcatttaacat
aaaaaaagatcatgtcaagtaagttagaaagtccagtgtaagatctgaat
ttttaaaactagaagaaaacagaagagaaagatttcttgttattgttcag
ttatagattcttaggttgaccacgaaattacagacaatagaagcaaacca
gaaaaatgagattgcccttagttaaaaaacaaaaattaaataaatccatg
aagaaaaagataaatataaggtgggagaagatatttctgaatgacaaatt
atagcttactaaagatttgaaatgatttctgtatttgccaacaatctcgt
ttgccatgtgtttagcttgtttcatgtgcataatttgctcttagtaaata
cacacgcatactattctaactataatattcattgaataaataagttacat
tctgtggagactttgtacctgaacacttgaggaaagagccaatgtcatga
ttttcatgcaaatttattagtgcagaacattgttttaggacatacaaaat
ttaaagaagacgttgagtgagatttgggttgtttgtggataagagagagg
agaaaactacaaatgcaaaaaatgctttattctacaaaggggtcttttgt
gaagcatagttcaacagagagagaagagaaaggagggaggggagagtgtg
ggaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13829527_13830547
seq2: B6Ng01-049H07.b_40_1052

seq1  GAATTCTTTCTGTAGAATAAGTGGGTCTCAAACTCAGATATCTGCCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGTAGAATAAGTGGGTCTCAAACTCAGATATCTGCCTCAT  50

seq1  TCCTCCTCCTGAGTACTGGGATTAAAGGATTGTACTACTATTTCCTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTGAGTACTGGGATTAAAGGATTGTACTACTATTTCCTGTCT  100

seq1  AACTGTAGTTTTGAGAAGTTAGCAGCATCTAGGATTCAAGCCCTTTACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAGTTTTGAGAAGTTAGCAGCATCTAGGATTCAAGCCCTTTACTT  150

seq1  TTTGAAGCATAGTGAAATGAGTTGTGTTAAATTACTTTCAATCAATCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCATAGTGAAATGAGTTGTGTTAAATTACTTTCAATCAATCTCA  200

seq1  GTCCAGGAATATACATCATAAATGTAGACAATGGAAAATGGGTTTATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGGAATATACATCATAAATGTAGACAATGGAAAATGGGTTTATCAG  250

seq1  CTAGCACTGCTTTTATAGAACTTCCACCAGCTACACTTCTGCCAACCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCACTGCTTTTATAGAACTTCCACCAGCTACACTTCTGCCAACCTAT  300

seq1  GTTTTTAAAGGTATGTTTTTGATAATATTACCTGTTTGACAGGTATGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAAAGGTATGTTTTTGATAATATTACCTGTTTGACAGGTATGGGA  350

seq1  AATGATATAAAATTTATTGGCAAATATCATGGTTTTCTGTGTTTGTAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATAAAATTTATTGGCAAATATCATGGTTTTCTGTGTTTGTAACA  400

seq1  ATGAATCTGTGTGCTATCTCTAGCTTCAAAATGGAAATATTTATTTCAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATCTGTGTGCTATCTCTAGCTTCAAAATGGAAATATTTATTTCAGT  450

seq1  ACAAGTGAATCTTATTAAAACAATCTTGTTTGTGAAGATTTCTGTGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTGAATCTTATTAAAACAATCTTGTTTGTGAAGATTTCTGTGATTA  500

seq1  AATAAAAGTACAATGATTATTAAAATGTTTTGCAAAATTTGAAAGCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGTACAATGATTATTAAAATGTTTTGCAAAATTTGAAAGCATTA  550

seq1  TAAATTATAAATATTTACTAATGGCTTTAAAATCATCTACCTAAAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATAAATATTTACTAATGGCTTTAAAATCATCTACCTAAAAATAG  600

seq1  ACTTTCCTAGAACTTTTCTTGAAGACATAATTAAGCTAGAGGAGTTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCTAGAACTTTTCTTGAAGACATAATTAAGCTAGAGGAGTTTGAA  650

seq1  AAACCCAACATTCCTAAAATAAATAATAAAAGCTCTAATAGTATTTATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAACATTCCTAAAATAAATAATAAAAGCTCTAATAGTATTTATGA  700

seq1  ACTTTATTCTTCAACAAATGCCTATAGAGTAATATGACAAGCATCCATCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTATTCTTCAACAAATGCCTATAGAGTAATATGACAAGCATCCATCT  750

seq1  ACACCTCATGCCACAGACATCTGTATGGTTTCAACCTTTAACTTGAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCATGCCACAGACATCTGTATGGTTTCAACCTTTAACTTGAAAGA  800

seq1  CACTAACTGCTGTAGTGTGGAATACACTTGAAAGATGAAGAGCAGAAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACTAACTGCTGTAGTGTGGAATACACTTGAAAGATGAAGAGCAG-AAAT  849

seq1  GACAAACCCATGCCTGCTACCCCTCCATTCAAATTACTTTTTGTGAATCA  900
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  GACAAACCCATGCCTGCTACCCCTCCATTC-AATTAC-TTTTGTGAATCA  897

seq1  GATCACAATCATACGAGGTTTAAATGAAAGTCTTGTTTTCTCGAAACCAT  950
      ||||||| |||||||| | ||||||||||||  || ||||||| ||||||
seq2  GATCACATTCATACGAAG-TTAAATGAAAGTTCTG-TTTCTCGGAACCAT  945

seq1  CAGCGGATGATGCT-CATGAACACAAAATATAATCTATGGATTGCAGCAT  999
      |||||||||||||| |||||||||  ||||| |||||| |||||||||||
seq2  CAGCGGATGATGCTCCATGAACAC-CAATAT-ATCTAT-GATTGCAGCAT  992

seq1  AGCAGTGCTACTTGAATTCACG  1021
      |||||||||||||||| |||||
seq2  AGCAGTGCTACTTGAA-TCACG  1013

seq1: chr3_13953920_13954828
seq2: B6Ng01-049H07.g_67_972 (reverse)

seq1  CCTTCCCACACTCTCCCCTCCCTCCTTTCTCTTTCTCTCTCTGTTGAACT  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTTCCCACACTCTCCCCTCCCTCCTTTCTC-TTCTCTCTCTGTTGAACT  49

seq1  ATGCTTCACAAAAGACCCCTTTTGTAGAATAAAGCATTTTTTGCATTTGT  100
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGCTTCACAAAAGACCCC-TTTGTAGAATAAAGCATTTTTTGCATTTGT  98

seq1  AGTTTTTCTCCTCTCTCTTATCCACAAACAACCCAAATCTCACTCAACGT  150
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-TTTTCTCCTCTCTCTTATCCACAAACAACCCAAATCTCACTCAACGT  147

seq1  CTTCTTTAAATTTTGTATGTCCTAAAACAATGTTCTGCACTAATAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTAAATTTTGTATGTCCTAAAACAATGTTCTGCACTAATAAATTT  197

seq1  GCATGAAAATCATGACATTGGCTCTTTCCTCAAGTGTTCAGGTACAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAAATCATGACATTGGCTCTTTCCTCAAGTGTTCAGGTACAAAGT  247

seq1  CTCCACAGAATGTAACTTATTTATTCAATGAATATTATAGTTAGAATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACAGAATGTAACTTATTTATTCAATGAATATTATAGTTAGAATAGT  297

seq1  ATGCGTGTGTATTTACTAAGAGCAAATTATGCACATGAAACAAGCTAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTGTGTATTTACTAAGAGCAAATTATGCACATGAAACAAGCTAAAC  347

seq1  ACATGGCAAACGAGATTGTTGGCAAATACAGAAATCATTTCAAATCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCAAACGAGATTGTTGGCAAATACAGAAATCATTTCAAATCTTTA  397

seq1  GTAAGCTATAATTTGTCATTCAGAAATATCTTCTCCCACCTTATATTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTATAATTTGTCATTCAGAAATATCTTCTCCCACCTTATATTTAT  447

seq1  CTTTTTCTTCATGGATTTATTTAATTTTTGTTTTTTAACTAAGGGCAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTTCATGGATTTATTTAATTTTTGTTTTTTAACTAAGGGCAATC  497

seq1  TCATTTTTCTGGTTTGCTTCTATTGTCTGTAATTTCGTGGTCAACCTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTCTGGTTTGCTTCTATTGTCTGTAATTTCGTGGTCAACCTAAG  547

seq1  AATCTATAACTGAACAATAACAAGAAATCTTTCTCTTCTGTTTTCTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATAACTGAACAATAACAAGAAATCTTTCTCTTCTGTTTTCTTCTA  597

seq1  GTTTTAAAAATTCAGATCTTACACTGGACTTTCTAACTTACTTGACATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAAATTCAGATCTTACACTGGACTTTCTAACTTACTTGACATGA  647

seq1  TCTTTTTTTATGTTAAATGATAAAAGTCTCAAGACATAAATATCTTGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTATGTTAAATGATAAAAGTCTCAAGACATAAATATCTTGTTT  697

seq1  CATTTTTGACATAAATTCAGTTTTCCTAACATTGTTTATTAAAGAAATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGACATAAATTCAGTTTTCCTAACATTGTTTATTAAAGAAATTG  747

seq1  TCCTCTATCATTTGTGTGTTCTTGGCACCTTTGTCAAAATCTGTTAACCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTATCATTTGTGTGTTCTTGGCACCTTTGTCAAAATCTGTTAACCA  797

seq1  TAAATATGTGGATTATTTCTGTGGTAAATATGTTGGTACACTGATATATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATGTGGATTATTTCTGTGGTAAATATGTTGGTACACTGATATATG  847

seq1  CTTGTTTTCTATCCCACTTATGTAATGTCTGCTTAATGTCAGAAATATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTTCTATCCCACTTATGTAATGTCTGCTTAATGTCAGAAATATGT  897

seq1  CTAGAATTC  909
      |||||||||
seq2  CTAGAATTC  906