BAC Information

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BAC

Clone NameB6Ng01-049J03
Chromosome3 (Build37)
Map Location 39,843,925 - 39,951,730
singlet/doubletdoublet
Overlap genenone
Upstream geneFat4, LOC100041432, LOC100040853, LOC100041443, LOC100041458
Downstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049J03.bB6Ng01-049J03.g
ACCDH873793DH873794
length9211,065
definitionDH873793|Mus musculus domesticus DNA, BAC clone: B6Ng01-049J03, 5' end.DH873794|Mus musculus domesticus DNA, BAC clone: B6Ng01-049J03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,843,925 - 39,844,850)(39,950,654 - 39,951,730)
sequence
gaattcttttaatctttgaagtggttaactttactctccttacaatgtag
tagaagagttcagtcatgattttgtgtgtaaatcttttggagcatgacaa
ttattacttttacccaataataaatttaaaagtctaatagcaagtactgt
gtagaaaatcaagataagatttaagaaataataagtaccctaaatatagg
catcatggaaggtttctgaaatgatcttcatgcctttagattcccactat
acaatgagggaaagataggcattgaggaatagaccacaatggcatccatg
taagattctgtcagatcccagctcctgcaatcagcttggcaaacaatgaa
tttgactgtgaatgaatttgactgtggttcatctcacattgcaccaagag
tccttaacccactgtcaatcctaaccaaagccaccttccagataagcaac
catttagttaaactctccatattacccatagccccagatgattagcactt
ttcttcaatttttctgctattctgagcaatactatcaccctcattaagat
catatgagtatgtgagttcacagtagaatcaagtcaaagggcactgtaca
atggctgccttctaactttgcctgaacacatattctacattcaatgttcc
ttaaaacttgcataggcacttaaatgataagtggtcaaagtcgcttgcag
attaaactgttgtgtgcttagtcatcttttcctgatggcatctttttatt
taaggcatttgttgaaatgtctcatgtcactctcctcagctccaatgata
ggaaagatgtgtttttcattgaatatgttctctttaagtcaaggatgtca
taccttctaacttcagaggagagaaacctcacaccaggtagcaatgggac
cactgcagagcctgcaacagg
gaattccaaaaataggtagagtggaacaaccagggctccttgagtcaggg
gtggatggtcttggccctcagctgcacatctttaagcaccccagggtgtt
ttctgcatgattgtgcattcctgttccagacacatgggagtttccaaaca
caaaacgaggttagaagtccttgcaataatctgtaaacagagagaagagt
cagttctaagttacactttcaagggcaaaggacaattcactccagaagcc
aggcttagtccccagatttccagtcctgaaactatggttggcttcaaaat
gtttttttctgaagccttgcatggacttaaaagtcagggggatttgccta
ggtagggagaagctagattgttttttgttttctgctatccataattaggt
gaaaaacaagatgttcttaaaaagaatccccagaattctaaaggcagcac
aaaatacaatgtgtttggaccttcatgctaaggattgaaatatttcacat
ttatttcttcctttatctttataaatcaagaaggactgtgtaactaagat
ggtcatttaatgagtaaggaaagcagtagaaagcaatccccaactctgct
gttacagacagcccaattagaagggaggacgggtccttggagcttctgcc
tcatccatggttttctttgtgtgtttagtatttgttgcttggaggcacat
cactccagcagcttcttagatattcacaatgtttgactagttgtcctttc
tagctaacgatgttatgatgcgtcgtggtactcttatctcatttattcca
tttccttctggaatttgacatttgttcagctacaggagtaacctttccaa
ttgtgccttgtatacaagactggagccctgctaaaccgctgccttccctg
tgtctgtgtacaagatatgaaccatgttacatgaaaattccacagaccta
tagcctgtttagtgtgtgtgtttgtgccagatatgggactgcttttgatg
ttaattgattttttttctatttaccgtgtatgtagcttagtaggttcctc
agattggaactctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_39843925_39844850
seq2: B6Ng01-049J03.b_45_965

seq1  GAATTCTTTTAATCTTTGAAGTGGTTAACTTTACTCTCCTTACAATGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAATCTTTGAAGTGGTTAACTTTACTCTCCTTACAATGTAG  50

seq1  TAGAAGAGTTCAGTCATGATTTTGTGTGTAAATCTTTTGGAGCATGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGTTCAGTCATGATTTTGTGTGTAAATCTTTTGGAGCATGACAA  100

seq1  TTATTACTTTTACCCAATAATAAATTTAAAAGTCTAATAGCAAGTACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTACTTTTACCCAATAATAAATTTAAAAGTCTAATAGCAAGTACTGT  150

seq1  GTAGAAAATCAAGATAAGATTTAAGAAATAATAAGTACCCTAAATATAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAATCAAGATAAGATTTAAGAAATAATAAGTACCCTAAATATAGG  200

seq1  CATCATGGAAGGTTTCTGAAATGATCTTCATGCCTTTAGATTCCCACTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGGAAGGTTTCTGAAATGATCTTCATGCCTTTAGATTCCCACTAT  250

seq1  ACAATGAGGGAAAGATAGGCATTGAGGAATAGACCACAATGGCATCCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGGGAAAGATAGGCATTGAGGAATAGACCACAATGGCATCCATG  300

seq1  TAAGATTCTGTCAGATCCCAGCTCCTGCAATCAGCTTGGCAAACAATGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTCTGTCAGATCCCAGCTCCTGCAATCAGCTTGGCAAACAATGAA  350

seq1  TTTGACTGTGAATGAATTTGACTGTGGTTCATCTCACATTGCACCAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTGTGAATGAATTTGACTGTGGTTCATCTCACATTGCACCAAGAG  400

seq1  TCCTTAACCCACTGTCAATCCTAACCAAAGCCACCTTCCAGATAAGCAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAACCCACTGTCAATCCTAACCAAAGCCACCTTCCAGATAAGCAAC  450

seq1  CATTTAGTTAAACTCTCCATATTACCCATAGCCCCAGATGATTAGCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTTAAACTCTCCATATTACCCATAGCCCCAGATGATTAGCACTT  500

seq1  TTCTTCAATTTTTCTGCTATTCTGAGCAATACTATCACCCTCATTAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCAATTTTTCTGCTATTCTGAGCAATACTATCACCCTCATTAAGAT  550

seq1  CATATGAGTATGTGAGTTCACAGTAGAATCAAGTCAAAGGGCACTGTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGAGTATGTGAGTTCACAGTAGAATCAAGTCAAAGGGCACTGTACA  600

seq1  ATGGCTGCCTTCTAACTTTGCCTGAACACATATTCTACATTCAATGTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGCCTTCTAACTTTGCCTGAACACATATTCTACATTCAATGTTCC  650

seq1  TTAAAACTTGCATAGGCACTTAAATGATAAGTGGTCAAAGTCGCTTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACTTGCATAGGCACTTAAATGATAAGTGGTCAAAGTCGCTTGCAG  700

seq1  ATTAAACTGTTGTGTGCTTAGTCATCTTTTCCTGATGGCATCTTTTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACTGTTGTGTGCTTAGTCATCTTTTCCTGATGGCATCTTTTTATT  750

seq1  TAAGGCATTTGTTGAAAATGTCTCATGTCACTCTCCTCAGCTCCAATGAT  800
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TAAGGCATTTGTTG-AAATGTCTCATGTCACTCTCCTCAGCTCCAATGAT  799

seq1  AGGAAAAGATGTGTTTTTCATTGAATATGTTC-CCTTAAGTCAAAGAATG  849
      ||| |||||||||||||||||||||||||||| | ||||||| ||| |||
seq2  AGG-AAAGATGTGTTTTTCATTGAATATGTTCTCTTTAAGTC-AAGGATG  847

seq1  TCATACCTTCTAACTTCAGGAGGAGAGAAACCTCAACACCAGGTAGCAAA  899
      |||||||||||||||||| ||||||||||||||| |||||||||||| ||
seq2  TCATACCTTCTAACTTCA-GAGGAGAGAAACCTC-ACACCAGGTAGC-AA  894

seq1  TGGGACCACTGCAGAGCCTGCAACAGG  926
      |||||||||||||||||||||||||||
seq2  TGGGACCACTGCAGAGCCTGCAACAGG  921

seq1: chr3_39950654_39951730
seq2: B6Ng01-049J03.g_65_1129 (reverse)

seq1  CCAGAGTTTCAA-CTGAGGGAACCTACTAAGCTACATACACTGTTATAAT  49
      |||||||| ||| |||| ||||||||||||||||||||||| |   ||| 
seq2  CCAGAGTTCCAATCTGA-GGAACCTACTAAGCTACATACACGG---TAAA  46

seq1  TAGAAAAAAAATTCAATTAACATTCAAAACCAGT-CCATATCTTTGCAAC  98
      ||||||||||| |||||||||| |||||| |||| |||||||  ||  ||
seq2  TAGAAAAAAAA-TCAATTAACA-TCAAAAGCAGTCCCATATC--TGGCAC  92

seq1  AAACACACCACACTAAACAGGCTATAGGTCTGTGGAATTTTTCATGTAAC  148
      ||||||| ||||||||||||||||||||||||||||| ||||||||||||
seq2  AAACACA-CACACTAAACAGGCTATAGGTCTGTGGAA-TTTTCATGTAAC  140

seq1  ATGGTTCAATATCCTTGTACACAGAACACAGTGAAGGCAGCGGTTTAGCA  198
      ||||||| |||| ||||||||||| |||||| ||||||||||||||||||
seq2  ATGGTTC-ATAT-CTTGTACACAG-ACACAGGGAAGGCAGCGGTTTAGCA  187

seq1  GGGCTCCAGTCTTGTATAACAAGGCACAATTGGAAAGGTTACTCCTGTAG  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GGGCTCCAGTCTTGTAT-ACAAGGCACAATTGGAAAGGTTACTCCTGTAG  236

seq1  CTGAACAAATGTCAAATTCCAGAAGGAAATGGAATAAATGAGATAAGAGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACAAATGTCAAATTCCAGAAGGAAATGGAATAAATGAGATAAGAGT  286

seq1  ACCACGACGCATCATAACATCGTTAGCTAGAAAGGACAACTAGTCAAACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACGACGCATCATAACATCGTTAGCTAGAAAGGACAACTAGTCAAACA  336

seq1  TTGTGAATATCTAAGAAGCTGCTGGAGTGATGTGCCTCCAAGCAACAAAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATATCTAAGAAGCTGCTGGAGTGATGTGCCTCCAAGCAACAAAT  386

seq1  ACTAAACACACAAAGAAAACCATGGATGAGGCAGAAGCTCCAAGGACCCG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACACACAAAGAAAACCATGGATGAGGCAGAAGCTCCAAGGACCCG  436

seq1  TCCTCCCTTCTAATTGGGCTGTCTGTAACAGCAGAGTTGGGGATTGCTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCCTTCTAATTGGGCTGTCTGTAACAGCAGAGTTGGGGATTGCTTT  486

seq1  CTACTGCTTTCCTTACTCATTAAATGACCATCTTAGTTACACAGTCCTTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGCTTTCCTTACTCATTAAATGACCATCTTAGTTACACAGTCCTTC  536

seq1  TTGATTTATAAAGATAAAGGAAGAAATAAATGTGAAATATTTCAATCCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTATAAAGATAAAGGAAGAAATAAATGTGAAATATTTCAATCCTT  586

seq1  AGCATGAAGGTCCAAACACATTGTATTTTGTGCTGCCTTTAGAATTCTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAAGGTCCAAACACATTGTATTTTGTGCTGCCTTTAGAATTCTGG  636

seq1  GGATTCTTTTTAAGAACATCTTGTTTTTCACCTAATTATGGATAGCAGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCTTTTTAAGAACATCTTGTTTTTCACCTAATTATGGATAGCAGAA  686

seq1  AACAAAAAACAATCTAGCTTCTCCCTACCTAGGCAAATCCCCCTGACTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAACAATCTAGCTTCTCCCTACCTAGGCAAATCCCCCTGACTTT  736

seq1  TAAGTCCATGCAAGGCTTCAGAAAAAAACATTTTGAAGCCAACCATAGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCATGCAAGGCTTCAGAAAAAAACATTTTGAAGCCAACCATAGTT  786

seq1  TCAGGACTGGAAATCTGGGGACTAAGCCTGGCTTCTGGAGTGAATTGTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGACTGGAAATCTGGGGACTAAGCCTGGCTTCTGGAGTGAATTGTCC  836

seq1  TTTGCCCTTGAAAGTGTAACTTAGAACTGACTCTTCTCTCTGTTTACAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCTTGAAAGTGTAACTTAGAACTGACTCTTCTCTCTGTTTACAGA  886

seq1  TTATTGCAAGGACTTCTAACCTCGTTTTGTGTTTGGAAACTCCCATGTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGCAAGGACTTCTAACCTCGTTTTGTGTTTGGAAACTCCCATGTGT  936

seq1  CTGGAACAGGAATGCACAATCATGCAGAAAACACCCTGGGGTGCTTAAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACAGGAATGCACAATCATGCAGAAAACACCCTGGGGTGCTTAAAG  986

seq1  ATGTGCAGCTGAGGGCCAAGACCATCCACCCCTGACTCAAGGAGCCCTGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGCTGAGGGCCAAGACCATCCACCCCTGACTCAAGGAGCCCTGG  1036

seq1  TTGTTCCACTCTACCTATTTTTGGAATTC  1077
      |||||||||||||||||||||||||||||
seq2  TTGTTCCACTCTACCTATTTTTGGAATTC  1065