BAC Information

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BAC

Clone NameB6Ng01-049J15
Chromosome3 (Build37)
Map Location 4,991,136 - 5,092,793
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667709, LOC620283
Downstream geneZfhx4, Pxmp3, EG620382, EG667759, LOC100041165
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049J15.bB6Ng01-049J15.g
ACCDH873817DH873818
length9721,022
definitionDH873817|Mus musculus domesticus DNA, BAC clone: B6Ng01-049J15, 5' end.DH873818|Mus musculus domesticus DNA, BAC clone: B6Ng01-049J15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,991,136 - 4,992,101)(5,091,743 - 5,092,793)
sequence
gaattcaactcatgacctctggaagagcagtcagtgctcttaacccctga
accatctcttcagttctagatgttcttatattgtattccaaatttgttct
cagcaaaagaagcatcattgtaagagaagaaaagaaatagtgccttttat
aaaagacaaaggacagatcagggcttatattaccacaagttgtactaaaa
taaagactttaataattcaaacatttaatgaatagaaagcagcatgaaaa
tagtactattagcttattttagagatggtgtagagaaaacttagaagtca
aggcaatgacattcagacgtgttagaaactacataggtcagaaacatatt
aactatgcatggacaggacaggaaagcagataacatttgaaatgtaaata
aacaaaatatcaacttttaaaatgagggagactattagtataaatatagt
tttatccaagagaactctactgtggatcattgggctacacaaagatagcc
tggtttccagttgagctgaggtgctgaacccgggtacccggtggtaattc
acctacatgggacagaaggagttctctcatgtcttctggaactctggctc
ctgcctaagttaccccttcctcagcccccacaagagaagcatggctagaa
gtcagtgcaaagtcccaagcttctaaccttcaggctaaactcctccccag
ttacctagcaacagtaaagataacagcataccttaaaaggagctgtttgg
cccctccttgctctctctcactcctttcactcctctagctcccttgctct
tacccctctctcctctctctctctctcctctctttgtctctcttcctctc
tctcctttcccctttgtttctcttggccatggctggctctttctctctct
tttacgttcccgttcttctgcctttctacataaagctctaaaccatatac
tgtttctgtcatcaaacccact

gaattccatattcccatgaacatttttctataataatgcttttaacagcc
tgtaatttaagtagctacttgttagtgtatctatcattgactagataaga
aggcaagactctgtctcttttagcacaagtaagcctgaatgctaattgaa
tttcaaagaagagcttaaatgtaattattcattataagattagaccagtg
aatgtgtaaatctcctatagtcttttcatttcatatttcactcttttcta
aaagtaagatgtacaccattgagttgttttgctttgcttcagaatcaagg
ttttaaaattacttttggtgtcattgacttggataatccatcaacttgaa
aacaagcatttttctagaaatggaatgaaagataaaaacatagaagctag
aacgtcttggaaatagttataggaataaaataccagtttcctagagaaaa
ccagaatcactgataatagttatgcactttcctctaaaatgcttgcaggt
ttcccatatataaagcagagatgacagattcataaactgtaacataagac
tgtccactcctccagtctgcaggcacttagcggccgtgaagccagtcaaa
gaccccgtgctttaaagatgataacattgttggaatgttaatagtgtaaa
acttcctgaaggaaaatcattcctttatggactgaggaaagagtcagact
ggcttagcccattttgcacctttgtacctgagaatctctgggcttaaact
acagaagcttcagtatttgcctctcaatccattaagccttgagaacatgg
gttttggttcaagacttcacacagaacacagaaaggactgtgtgagcctt
cctcaagtatggtgatctttctcagctgtgatccttcactgcatcatagt
agaaatttttattttagcaaactgtgtcacctttgttcagcaagactccc
ccccttgcaaaaaaaaaaaacaaaatcaaaaaccaaacccttctgcttaa
tatgcatgaaagcagaatgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_4991136_4992101
seq2: B6Ng01-049J15.b_43_1001

seq1  GAATTCAACTCATGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCCCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCATGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCCCTGA  50

seq1  ACCATCTCTTCAGTTCTAGATGTTCTTATATTGTATTCCAAATTTGTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTCTTCAGTTCTAGATGTTCTTATATTGTATTCCAAATTTGTTCT  100

seq1  CAGCAAAAGAAGCATCATTGTAAGAGAAGAAAAGAAATAGTGCCTTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAAGAAGCATCATTGTAAGAGAAGAAAAGAAATAGTGCCTTTTAT  150

seq1  AAAAGACAAAGGACAGATCAGGGCTTATATTACCACAAGTTGTACTAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAAAGGACAGATCAGGGCTTATATTACCACAAGTTGTACTAAAA  200

seq1  TAAAGACTTTAATAATTCAAACATTTAATGAATAGAAAGCAGCATGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGACTTTAATAATTCAAACATTTAATGAATAGAAAGCAGCATGAAAA  250

seq1  TAGTACTATTAGCTTATTTTAGAGATGGTGTAGAGAAAACTTAGAAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTATTAGCTTATTTTAGAGATGGTGTAGAGAAAACTTAGAAGTCA  300

seq1  AGGCAATGACATTCAGACGTGTTAGAAACTACATAGGTCAGAAACATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAATGACATTCAGACGTGTTAGAAACTACATAGGTCAGAAACATATT  350

seq1  AACTATGCATGGACAGGACAGGAAAGCAGATAACATTTGAAATGTAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGCATGGACAGGACAGGAAAGCAGATAACATTTGAAATGTAAATA  400

seq1  AACAAAATATCAACTTTTAAAATGAGGGAGACTATTAGTATAAATATAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAATATCAACTTTTAAAATGAGGGAGACTATTAGTATAAATATAGT  450

seq1  TTTATCCAAGAGAACTCTACTGTGGATCATTGGGCTACACAAAGATAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCAAGAGAACTCTACTGTGGATCATTGGGCTACACAAAGATAGCC  500

seq1  TGGTTTCCAGTTGAGCTGAGGTGCTGAACCCGGGTACCCGGTGGTAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCCAGTTGAGCTGAGGTGCTGAACCCGGGTACCCGGTGGTAATTC  550

seq1  ACCTACATGGGACAGAAGGAGTTCTCTCATGTCTTCTGGAACTCTGGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACATGGGACAGAAGGAGTTCTCTCATGTCTTCTGGAACTCTGGCTC  600

seq1  CTGCCTAAGTTACCCCTTCCTCAGCCCCCACAAGAGAAGCATGGCTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTAAGTTACCCCTTCCTCAGCCCCCACAAGAGAAGCATGGCTAGAA  650

seq1  GTCAGTGCAAAGTCCCAAGCTTCTAACCTTCAGGCTAAACTCCTCCCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTGCAAAGTCCCAAGCTTCTAACCTTCAGGCTAAACTCCTCCCCAG  700

seq1  TTACCTAGCAACAGTAAAGATAACAGCATACCTTAAAAGGAGCTGTTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTAGCAACAGTAAAGATAACAGCATACCTTAAAAGGAGCTGTTTGG  750

seq1  CCCCTCCTTGCTCTCTCTCACTCCTTTCACTCCTCTAGCTCCCTTGCTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCTTGCTCTCTCTCACTCCTTTCACTCCTCTAGCTCCCTTGCTCT  800

seq1  TACCCCTCTCTCCTCTCTCTCTCTCTCCTCTCTTTGTTCTCTCTTCCTCT  850
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TACCCCTCTCTCCTCTCTCTCTCTCTCCTCTCTTTG-TCTCTCTTCCTCT  849

seq1  CTCTCCTTTTCCCCTTTGTTTTCTCTTGGCCATGGCTGGCCTCTTTCTCT  900
      |||||| ||||||||||| |||||||||||||||||||| ||||||||||
seq2  CTCTCC-TTTCCCCTTTG-TTTCTCTTGGCCATGGCTGG-CTCTTTCTCT  896

seq1  CTCTTTTACGTTCCCGTTCTTCCTGCCTTTCTACAATAAAGCTCTAAAAC  950
      ||||||||||||||||||||| |||||||||||| |||||||||| ||||
seq2  CTCTTTTACGTTCCCGTTCTT-CTGCCTTTCTAC-ATAAAGCTCT-AAAC  943

seq1  CATATACTGTCTCTGT  966
      |||||||||| |||||
seq2  CATATACTGTTTCTGT  959


seq1: chr3_5091743_5092793
seq2: B6Ng01-049J15.g_66_1087 (reverse)

seq1  AAGCATTTACTGCTTTTCATGCAATGTATTTATAGCAGAAGGGTTTTTGG  50
      |||||||  |||| |||||||||   ||||   ||||||||||  |||||
seq2  AAGCATT--CTGC-TTTCATGCA---TATT--AAGCAGAAGGG--TTTGG  40

seq1  TTTTTTTGGTTTTTTTGGTTTTTTTTTTTTTTGCAAGGGGGGGAGGTCTT  100
      |||||   | |||     | |||||||||||||||||||||||| ||| |
seq2  TTTTT---GATTT-----TGTTTTTTTTTTTTGCAAGGGGGGGA-GTC-T  80

seq1  TGCTGAAACAAAGGTTGAACACAGGTTTGCTAAAATAAAAATTTCTACTA  150
      ||||| |||||||||   ||||| ||||||||||||||||||||||||||
seq2  TGCTG-AACAAAGGT--GACACA-GTTTGCTAAAATAAAAATTTCTACTA  126

seq1  TGGATGCAAGTGAAGGATCACAGCTGAGAAAAGATCACCATACTTGAGGA  200
      | ||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  T-GATGC-AGTGAAGGATCACAGCTGAG-AAAGATCACCATACTTGAGGA  173

seq1  AGGCTCACACAGTCCTTTCTTGTGTTCTGTGTGAAGTCTTGAACCAAAAC  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGCTCACACAGTCCTTTC-TGTGTTCTGTGTGAAGTCTTGAACCAAAAC  222

seq1  CCATGTTCCTCAAGGCTTAATGGATTGAGAGGCAAATACTGAAGCTTCTG  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTT-CTCAAGGCTTAATGGATTGAGAGGCAAATACTGAAGCTTCTG  271

seq1  TAGTTTAAGCCCAGAGATTCTCAGGTACAAAGGTGCAAAATGGGCTAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTAAGCCCAGAGATTCTCAGGTACAAAGGTGCAAAATGGGCTAAGC  321

seq1  CAGTCTGACTCTTTCCTCAGTCCATAAAGGAATGATTTTCCTTCAGGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGACTCTTTCCTCAGTCCATAAAGGAATGATTTTCCTTCAGGAAG  371

seq1  TTTTACACTATTAACATTCCAACAATGTTATCATCTTTAAAGCACGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACACTATTAACATTCCAACAATGTTATCATCTTTAAAGCACGGGGT  421

seq1  CTTTGACTGGCTTCACGGCCGCTAAGTGCCTGCAGACTGGAGGAGTGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACTGGCTTCACGGCCGCTAAGTGCCTGCAGACTGGAGGAGTGGAC  471

seq1  AGTCTTATGTTACAGTTTATGAATCTGTCATCTCTGCTTTATATATGGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTATGTTACAGTTTATGAATCTGTCATCTCTGCTTTATATATGGGA  521

seq1  AACCTGCAAGCATTTTAGAGGAAAGTGCATAACTATTATCAGTGATTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCAAGCATTTTAGAGGAAAGTGCATAACTATTATCAGTGATTCTG  571

seq1  GTTTTCTCTAGGAAACTGGTATTTTATTCCTATAACTATTTCCAAGACGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCTAGGAAACTGGTATTTTATTCCTATAACTATTTCCAAGACGT  621

seq1  TCTAGCTTCTATGTTTTTATCTTTCATTCCATTTCTAGAAAAATGCTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCTTCTATGTTTTTATCTTTCATTCCATTTCTAGAAAAATGCTTGT  671

seq1  TTTCAAGTTGATGGATTATCCAAGTCAATGACACCAAAAGTAATTTTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTTGATGGATTATCCAAGTCAATGACACCAAAAGTAATTTTAAA  721

seq1  ACCTTGATTCTGAAGCAAAGCAAAACAACTCAATGGTGTACATCTTACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGATTCTGAAGCAAAGCAAAACAACTCAATGGTGTACATCTTACTT  771

seq1  TTAGAAAAGAGTGAAATATGAAATGAAAAGACTATAGGAGATTTACACAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAGAGTGAAATATGAAATGAAAAGACTATAGGAGATTTACACAT  821

seq1  TCACTGGTCTAATCTTATAATGAATAATTACATTTAAGCTCTTCTTTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGTCTAATCTTATAATGAATAATTACATTTAAGCTCTTCTTTGAA  871

seq1  ATTCAATTAGCATTCAGGCTTACTTGTGCTAAAAGAGACAGAGTCTTGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATTAGCATTCAGGCTTACTTGTGCTAAAAGAGACAGAGTCTTGCC  921

seq1  TTCTTATCTAGTCAATGATAGATACACTAACAAGTAGCTACTTAAATTAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATCTAGTCAATGATAGATACACTAACAAGTAGCTACTTAAATTAC  971

seq1  AGGCTGTTAAAAGCATTATTATAGAAAAATGTTCATGGGAATATGGAATT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTTAAAAGCATTATTATAGAAAAATGTTCATGGGAATATGGAATT  1021

seq1  C  1051
      |
seq2  C  1022


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