BAC Information

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BAC

Clone NameB6Ng01-049L02
Chromosome3 (Build37)
Map Location 12,334,116 - 12,334,861
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667999
Downstream geneEG621965, LOC100039798, EG668033, LOC668037
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049L02.bB6Ng01-049L02.g
ACCDH873880DH873881
length1,063852
definitionDH873880|Mus musculus domesticus DNA, BAC clone: B6Ng01-049L02, 5' end.DH873881|Mus musculus domesticus DNA, BAC clone: B6Ng01-049L02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcctattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagagcaagccattgctgtt
ctgttcaggaatctttcccctgtacccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtgcaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
cctgtagtaaagctttaggtcaggcatgggtgattccaccagaggttctt
ttatccttgagaagagtttttgctatcctaggttttttgttatccagatg
aatttgcaaattgctcctttctatttcgtttgaagaattgagtttggatt
tttgatggggattgcattgaattctgtgtaatttgctttttggcaaagaa
tagcccatttttacaatgttgatcctgccaatccctggagcatggggagg
atctttccatcttctgaagatcttcttttaatttcttttcttcagagaac
tgaagtttttatcaacagatctttttcttctttagttagagtcacgccaa
gatatttatattatttgtgactatgagacgtgtgtttcctattcttctca
gtctgttatcttgtgtgagaagccatgacttgttgagttattatatccat
cttactcacgaac
gaattcaaaaaaacaaaggaccaaataatacaatttaaaattgaggtaca
gatagaaacagtgagttcctaatagaagaatggctgagaaacatttaaag
aaatgttcagtgtctttagccaataaagaaatgtgttattcagccatcat
cagagaagattcttcttgcagagatagaccaaattacagagggacccaca
ggcagacctacaggcagacagagggtaggggtataatcctggaaaacaga
aaactcaatgagatgtctccatgaaaccacttccctcaaaactcaggaaa
actcaagggaaaggaaacaaaaatggtgtaggaaccagaggggatggggg
acaccaggagaacaaggccctctaatcaacttagctcttatgaactcaga
gactgaagcagcaaacacagggctgagataggtgttcaccaggctcggtg
cttatgtattatatctttcagtataatacttttatgggactcgtgagtgt
gtgaatgagcatgtttcttattttggaactttcttgggacttttatctcc
tattgatttgccttgtctaacttacatgatcttttgttttaccctactta
atttattttgttaatgatttaaaatgcctcctgggtgctctcgagaagaa
caccatggcttaaaatgactaaatgtaaatacaaataaaagtaatccaca
aaacattaagattactatggctctctatatgtagaatttgttccatatca
caatttaatcttttcataaaatttatgctttcatttcttttggtaaactt
tttctttatattaaagtgagtttggtgtgatagtttttatgtgagatgtt
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_12334116_12334861
seq2: B6Ng01-049L02.g_180_917

seq1  TTTAGCCAATAAAGAAATGTGTTATTCAGCCATCATCAGAGAAGATTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCCAATAAAGAAATGTGTTATTCAGCCATCATCAGAGAAGATTCTT  50

seq1  CTTGCAGAGATAGACCAAATTACAGAGGGACCCACAGGCAGACCTACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGAGATAGACCAAATTACAGAGGGACCCACAGGCAGACCTACAGG  100

seq1  CAGACAGAGGGTAGGGGTATAATCCTGGAAAACAGAAAACTCAATGAGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGAGGGTAGGGGTATAATCCTGGAAAACAGAAAACTCAATGAGAT  150

seq1  GTCTCCATGAAACCACTTCCCTCAAAACTCAGGAAAACTCAAGGGAAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATGAAACCACTTCCCTCAAAACTCAGGAAAACTCAAGGGAAAGG  200

seq1  AAACAAAAATGGTGTAGGAACCAGAGGGGATGGGGGACACCAGGAGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAATGGTGTAGGAACCAGAGGGGATGGGGGACACCAGGAGAACA  250

seq1  AGGCCCTCTAATCAACTTAGCTCTTATGAACTCAGAGACTGAAGCAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCTCTAATCAACTTAGCTCTTATGAACTCAGAGACTGAAGCAGCAA  300

seq1  ACACAGGGCTGAGATAGGTGTTCACCAGGCTCGGTGCTTATGTATTATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGGGCTGAGATAGGTGTTCACCAGGCTCGGTGCTTATGTATTATAT  350

seq1  CTTTCAGTATAATACTTTTATGGGACTCGTGAGTGTGTGAATGAGCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGTATAATACTTTTATGGGACTCGTGAGTGTGTGAATGAGCATGT  400

seq1  TTCTTATTTTGGAACTTTCTTGGGACTTTTATCTCCTATTGATTTGCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATTTTGGAACTTTCTTGGGACTTTTATCTCCTATTGATTTGCCTT  450

seq1  GTCTAACTTACATGATCTTTTGTTTTACCCTACTTAATTTATTTTGTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAACTTACATGATCTTTTGTTTTACCCTACTTAATTTATTTTGTTAA  500

seq1  TGATTTAAAATGCCTCCTGGGTGCTCTCGAGAAGAACACCATGGCTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGATTTAAAATGCCTCCTGGGTGCTCTCGAGAAGAACACCATGGCTT-AA  549

seq1  AATGACTAAATGTAAATACAAATAAAAGTAATCCACAAAACATTAAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTAAATGTAAATACAAATAAAAGTAATCCACAAAACATTAAGATT  599

seq1  ACTATGGCTCTCTATATGTAGAATTTGTTCCATATCACAATTTTAATCTT  650
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTATGGCTCTCTATATGTAGAATTTGTTCCATATCACAA-TTTAATCTT  648

seq1  TTCATTAAAATTTTATGCTTTCATTTCTTTTGGTAAAACTTTTTCTTTAT  700
      |||||  ||| ||||||||||||||||||||||| |||||||||||||||
seq2  TTCAT--AAAATTTATGCTTTCATTTCTTTTGGT-AAACTTTTTCTTTAT  695

seq1  TAATTAAAGTGAGTTTGGTGTGATTAGTTTTTATGTGAGATGTTTT  746
        ||||||||||||||||||||| ||||||||||||||||||||||
seq2  --ATTAAAGTGAGTTTGGTGTGA-TAGTTTTTATGTGAGATGTTTT  738