BAC Information

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BAC

Clone NameB6Ng01-049M11
Chromosome3 (Build37)
Map Location 120,369,493 - 120,498,463
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043278, Ptbp2
Downstream gene2510027J23Rik, LOC435752, Tmem56, LOC668778, LOC668780, Alg14, Ppia-ps3_1234.1, Cnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049M11.bB6Ng01-049M11.g
ACCDH873942DH873943
length1,025481
definitionDH873942|Mus musculus domesticus DNA, BAC clone: B6Ng01-049M11, 5' end.DH873943|Mus musculus domesticus DNA, BAC clone: B6Ng01-049M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,369,493 - 120,370,524)(120,497,977 - 120,498,463)
sequence
gaattccagcgatggaatcatttaccgtcagcttggtagtaagtttcttt
acctgatgagccatgttttagctctgctctctgtttataaacagggaaat
aacgctagaaatagacatccatatcagaagtaattatagtcaaggtttcc
atcagttgtgtactttttatggatgagaaagtgaattatggaagagggaa
actagcaagttggatacagtcaaggaaatttgccacaacattcatatata
ctggtgttctgcagaaaaatactgtaagctcattgacacttgagggaaac
attgaccacaaccaacatgggagaggaaaaatacttttttcatcttagat
tagatatgagattcttatttgatccaaacttcccattagcttgtagtagt
gactgtaactcctacattattattctctgtgtgtaatatacagaagaaat
ccaacattccttattttgtaaggacaaaagtcatcagaagattgcctctt
catcagtacctctggaagcatgagggttacccctgaagctcagctgaccc
caaggaaacagatcctgagtgtcatagccccttctactatggcacttctt
catttcccttaccagtacaagaaagagaatgagaaaggtgaagctgtgga
catctgataattctctttaagtgggtttttataatctttggagtgtttct
ggtaccagagtgctttaccataaatatttccaagtggatacaagcctttt
caactcttggatgccaagagtaccatcttatgtgcatgtgtttatacctg
gcagaataggatgacagaaacaattttatccagcaactacatgacagcaa
agaacagtaccctaatcacaaggaaaaagcaccctagaccaaagagctgc
ctctgtttagactattagtgaagtatagcagagttgggacctgccgcaga
gctcatctgcatgccaaatgaaatcaccagtgcttccggtatctaagtaa
cggctggaagtcacacagtttccct
attgttgttaaaaaaaagtacttgttttcttttttttaagaacggagggg
ctaaggtcataaaatgctgattcatgggataataaaaaaggaaactggga
aaaagattgaattgatatgaaagtagaagactgggctttggtctgcaaga
gctaagctatctaaataagctatctggagagctgtcttgggcagaacatg
gttgattttgagttgttctttcaccatggccaaacacctctgaccaagcc
agggctgatccttggcatagtatacttattaagcatacaaaatcttcaat
ttttaaatatatggccatataattgcatatatatatatatgtatatatat
atatatatatatatagtaagtttactttctttttcaatttaacactacgt
aatgatcttttaaaatctactttgtctaatattatagtgtttattgggca
tggtttgtgtgtgtgtgtggcaggggtgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_120369493_120370524
seq2: B6Ng01-049M11.b_44_1065

seq1  GAATTCCAGCGATGGAATCATTTACCGTCAGCTTGGTAGTAAGTTTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCGATGGAATCATTTACCGTCAGCTTGGTAGTAAGTTTCTTT  50

seq1  ACCTGATGAGCCATGTTTTAGCTCTGCTCTCTGTTTATAAACAGGGAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGATGAGCCATGTTTTAGCTCTGCTCTCTGTTTATAAACAGGGAAAT  100

seq1  AACGCTAGAAATAGACATCCATATCAGAAGTAATTATAGTCAAGGTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTAGAAATAGACATCCATATCAGAAGTAATTATAGTCAAGGTTTCC  150

seq1  ATCAGTTGTGTACTTTTTATGGATGAGAAAGTGAATTATGGAAGAGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTGTGTACTTTTTATGGATGAGAAAGTGAATTATGGAAGAGGGAA  200

seq1  ACTAGCAAGTTGGATACAGTCAAGGAAATTTGCCACAACATTCATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCAAGTTGGATACAGTCAAGGAAATTTGCCACAACATTCATATATA  250

seq1  CTGGTGTTCTGCAGAAAAATACTGTAAGCTCATTGACACTTGAGGGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTTCTGCAGAAAAATACTGTAAGCTCATTGACACTTGAGGGAAAC  300

seq1  ATTGACAACAACCAACATGGGAGAGGAAAAATACTTTTTTCATCTTAGAT  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCACAACCAACATGGGAGAGGAAAAATACTTTTTTCATCTTAGAT  350

seq1  TAGATATGAGATTCTTATTTGATCCAAACTTCCCATTAGCTTGTAGTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATGAGATTCTTATTTGATCCAAACTTCCCATTAGCTTGTAGTAGT  400

seq1  GACTGTAACTCCTACATTATTATTCTCTGTGTGTAATATACAGAAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTAACTCCTACATTATTATTCTCTGTGTGTAATATACAGAAGAAAT  450

seq1  CCAACATTCCTTATTTTGTAAGGACAAAAGTCATCAGAAGATTGCCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATTCCTTATTTTGTAAGGACAAAAGTCATCAGAAGATTGCCTCTT  500

seq1  CATCAGTACCTCTGGAAGCATGAGGGTTACCCCTGAAGCTCAGCTGACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTACCTCTGGAAGCATGAGGGTTACCCCTGAAGCTCAGCTGACCC  550

seq1  CAAGGAAACAGATCCTGAGTGTCATAGCCCCTTCTACTATGGCACTTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAACAGATCCTGAGTGTCATAGCCCCTTCTACTATGGCACTTCTT  600

seq1  CATTTCCCTTACCAGTACAAGAAAGAGAATGAGAAAGGTGAAGCTGTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCCCTTACCAGTACAAGAAAGAGAATGAGAAAGGTGAAGCTGTGGA  650

seq1  CAATCTGATAATTCTCTTTAAGTGGGTTTTTATAATCTTTGGAGTGTTTC  700
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-ATCTGATAATTCTCTTTAAGTGGGTTTTTATAATCTTTGGAGTGTTTC  699

seq1  TGGTACCAGAGTGCTTTACCATAAATATTTCCAAGTGGATACAAGCCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACCAGAGTGCTTTACCATAAATATTTCCAAGTGGATACAAGCCTTT  749

seq1  TCAACTCTTGGATGCCAAGAGTACCATCTTATGTGCATGTGTTTATACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCTTGGATGCCAAGAGTACCATCTTATGTGCATGTGTTTATACCT  799

seq1  GGCAGAATAGGATGACAGAAACAATTTTATCCAGCAACTACATGACAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGCAGAATAGGATGACAGAAACAATTTTATCCAGCAACTACATGACA-GC  848

seq1  AAAGAACAGTACCCTAATCACAAGGAAAAAGCACCCTAGACCAAAGAGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAGTACCCTAATCACAAGGAAAAAGCACCCTAGACCAAAGAGCT  898

seq1  GCCTCTGTTTTAGACTATTAGGTGAAGTATAGCAGAGTTGGGACCTGCCG  950
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  GCCTCTG-TTTAGACTATTA-GTGAAGTATAGCAGAGTTGGGACCTGCCG  946

seq1  CAGAGCTCCATCTGCATGCCAAAATGAAATCACCAGTGCTTCCCGGTATC  1000
      ||||||| |||||||||||| |||||||||||||||||||| ||||||||
seq2  CAGAGCT-CATCTGCATGCC-AAATGAAATCACCAGTGCTT-CCGGTATC  993

seq1  TAAGGTAACGGTCTGTAAGTCACACCAGTTTC  1032
      ||| ||||||| ||| |||||||| |||||||
seq2  TAA-GTAACGG-CTGGAAGTCACA-CAGTTTC  1022

seq1: chr3_120497977_120498463
seq2: B6Ng01-049M11.g_68_554 (reverse)

seq1  ACCCACCCCTGCCACACACACACACAAACCATGCCCAATAAACACTATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCCTGCCACACACACACACAAACCATGCCCAATAAACACTATAA  50

seq1  TATTAGACAAAGTAGATTTTAAAAGATCATTACGTAGTGTTAAATTGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGACAAAGTAGATTTTAAAAGATCATTACGTAGTGTTAAATTGAAA  100

seq1  AAGAAAGTAAACTTACTATATATATATATATATATATATACATATATATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTAAACTTACTATATATATATATATATATATATACATATATATA  150

seq1  TATATGCAATTATATGGCCATATATTTAAAAATTGAAGATTTTGTATGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGCAATTATATGGCCATATATTTAAAAATTGAAGATTTTGTATGCT  200

seq1  TAATAAGTATACTATGCCAAGGATCAGCCCTGGCTTGGTCAGAGGTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGTATACTATGCCAAGGATCAGCCCTGGCTTGGTCAGAGGTGTTT  250

seq1  GGCCATGGTGAAAGAACAACTCAAAATCAACCATGTTCTGCCCAAGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGGTGAAAGAACAACTCAAAATCAACCATGTTCTGCCCAAGACAG  300

seq1  CTCTCCAGATAGCTTATTTAGATAGCTTAGCTCTTGCAGACCAAAGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAGATAGCTTATTTAGATAGCTTAGCTCTTGCAGACCAAAGCCCA  350

seq1  GTCTTCTACTTTCATATCAATTCAATCTTTTTCCCAGTTTCCTTTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTACTTTCATATCAATTCAATCTTTTTCCCAGTTTCCTTTTTTAT  400

seq1  TATCCCATGAATCAGCATTTTATGACCTTAGCCCCTCCGTTCTTAAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCATGAATCAGCATTTTATGACCTTAGCCCCTCCGTTCTTAAAAAA  450

seq1  AAGAAAACAAGTACTTTTTTTTAACAGCAATGAATTC  487
      |||||||||||||||||||||||||| ||||||||||
seq2  AAGAAAACAAGTACTTTTTTTTAACAACAATGAATTC  487