BAC Information

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BAC

Clone NameB6Ng01-049N09
Chromosome3 (Build37)15 (Build37)
Map Location 41,059,196 - 41,059,72049,588,933 - 49,590,123
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049N09.bB6Ng01-049N09.g
ACCDH873977DH873978
length9221,147
definitionDH873977|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N09, 5' end.DH873978|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,196 - 41,059,720)(49,588,933 - 49,590,123)
sequence
gaattccttgtttggctatgagccccattttttaatggggttatttgttt
tcctagagtccaccttcttgagtttttcatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcgcaatctgtggtgtcctt
tttatctttttgatggtgtcttttgccttacaaaagctttgcaattttat
gaggtcccatttgtcgattcttgatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatatcttcgaggcttttcctcact
ttttcttctataagtttcactgtctctggctttatgtggaatcccttgat
ccatttagattttaccttagtgcaaggtgataggaatggatcaattcaca
ttcttctacatgataacagccagttgtgccagcatcatttgttgaaaatg
ctgtctttttttaactggatggttttagctcacttgtcaaagatcaagtg
accataggtgtgtgtgttcatttctgggtcttcaattctattccattggt
ctacttgtctgctgctataccagtgcaatgcagttttgatcactattgtt
ctgtagtacagctttaggtcaggcatgcttattccaccagaggttgatta
tccttgaggagaagttttgctattctagttttttttttttttattttcag
atgaatttgcagattgctctctctaatttgttggaattttttttaggatt
gcattgaatctgtagattgcttttggcaagatagccatttttaatatatt
gatcctgcccatccatgagcatgggagatcattccattttctgagatctt
ctttaatttctttcttcatagatttgaagttttatcatacagatcttgta
cttctatagagtcacacgaaag
gaattcaataaaacatgagtgtactcataacactttatttggaaaatttt
gtaccttgaatttttttagtttttgtgtctagggtcaatgagaataaatg
gagtattagtgacaaaatgtttggtaagatatttaaattaaaaatatgat
tacatattatatgttattttaattgctaatattttacttatattttctaa
agttctttatatgtttgatagaaacgagttcaaattgtttttaaagtctt
ttctttcattagtttcccatttttatttgctgtatactctttaaaattaa
aagtttaagaatagaaattatagagcagaaaagaactaatccatcaattt
tatgtattcttttttattttgagtcataatttttgtatctcatcaccata
tttaatatacatatataaaactatatgtgtaactatatataactatatat
ataactatatatatataactatataactatataactacatatatatatat
atatgccaatgggaatacactcagattgtgtaatggattttcaattagta
tcatttctcattcatcatgtgctcttattttttctaggtacttcatatac
catccagtctcttaaatatattattgactatattttctattttttatgtg
aagtacctgattttctattatgaaattattaattattattgaatcttcaa
ttcaatcagtccaaagactaaaattaatgggaatcaatattacatgttat
tccaaaaattatcacgaactttgactatttaggatgtttttcacttcatc
ttattctgtttctcccattgtagtgtaaaccacaatactcatctgtaact
gtgaaatttgtgccatcttcatgtacagtgctacctgaattatattacgt
tgacatacagcatatatgtagatatacatgtaacatcagctctttcagat
atatatatcatacttggagtctagtaaatttgaggagtatagttcatttt
taccaaagcatatgtattatgtatatctatcttatattcatttcgatgaa
atttgggtacttttattcttgaaatttgggaatatatggttaattttggc
atgagggtacctctggattgattcagctgaacttcaagcatactgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059196_41059720
seq2: B6Ng01-049N09.b_62_586 (reverse)

seq1  GAATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGA  50
      |||||||||||||||| |||||| |||  |||||||||||||||||||||
seq2  GAATAGAATTGAAGACCCAGAAATGAACACACACACCTATGGTCACTTGA  50

seq1  TCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTC  100
      |||| |||||| ||||||||||||||||||  ||||||||||||||||||
seq2  TCTTTGACAAGTGAGCTAAAACCATCCAGTTAAAAAAAGACAGCATTTTC  100

seq1  AACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAAT  150
      |||||||| ||||||||||||||| |||||||||||||||||||| ||||
seq2  AACAAATGATGCTGGCACAACTGGCTGTTATCATGTAGAAGAATGTGAAT  150

seq1  TGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGG  200
      ||||||| ||||||| ||||| |||||||| |||||||| ||||||||||
seq2  TGATCCATTCCTATCACCTTGCACTAAGGTAAAATCTAAATGGATCAAGG  200

seq1  AACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGG  250
       |  ||||||||| ||||||||| ||||||||||||| || |||||| ||
seq2  GATTCCACATAAAGCCAGAGACAGTGAAACTTATAGAAGAAAAAGTGAGG  250

seq1  AAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGC  300
      |||||||| |||||||||| ||||||||||||||||||| ||||||||||
seq2  AAAAGCCTCGAAGATATGGGCACAGGGGAAAAATTCCTGAATAGAACAGC  300

seq1  AATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAAC  350
      ||||||||||||||||||||  ||||| ||||||||||||||||| ||| 
seq2  AATGGCTTGTGCTGTAAGATCAAGAATCGACAAATGGGACCTCATAAAAT  350

seq1  TGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CA  399
      |||||||||| || ||||||||||||||| |||| |||| ||||||| ||
seq2  TGCAAAGCTTTTGTAAGGCAAAAGACACCATCAAAAAGATAAAAAGGACA  400

seq1  CCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACT  449
      || |||||||| ||||||||||||||||||| ||||||||||||||||||
seq2  CC-ACAGATTGCGAAAGGATCTTTACCTATCTTAAATCAGATAGGGGACT  449

seq1  AATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAA  499
      |||||||||||||||| || |||||||||||||||| || || ||| |||
seq2  AATATCCAATATATATGAAAAACTCAAGAAGGTGGACTCTAGGAAAACAA  499

seq1  ATAACCCCATTAAAAAATGGGGCTCA  525
      ||||||||||||||||||||||||||
seq2  ATAACCCCATTAAAAAATGGGGCTCA  525

seq1: chr15_49588933_49590123
seq2: B6Ng01-049N09.g_69_1215

seq1  GAATTCAATAAAACATGAGTGTACTCATAACACTTTATTTGGAAAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAAACATGAGTGTACTCATAACACTTTATTTGGAAAATTTT  50

seq1  GTACCTTGAATTTTTTTAGTTTTTGTGTCTAGGGTCAATGAGAATAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTGAATTTTTTTAGTTTTTGTGTCTAGGGTCAATGAGAATAAATG  100

seq1  GAGTATTAGTGACAAAATGTTTGGTAAGATATTTAAATTAAAAATATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATTAGTGACAAAATGTTTGGTAAGATATTTAAATTAAAAATATGAT  150

seq1  TACATATTATATGTTATTTTAATTGCTAATATTTTACTTATATTTTCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTATATGTTATTTTAATTGCTAATATTTTACTTATATTTTCTAA  200

seq1  AGTTCTTTATATGTTTGATAGAAACGAGTTCAAATTGTTTTTAAAGTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTATATGTTTGATAGAAACGAGTTCAAATTGTTTTTAAAGTCTT  250

seq1  TTCTTTCATTAGTTTCCCATTTTTATTTGCTGTATACTCTTTAAAATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATTAGTTTCCCATTTTTATTTGCTGTATACTCTTTAAAATTAA  300

seq1  AAGTTTAAGAATAGAAATTATAGAGCAGAAAAGAACTAATCCATCAATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAAGAATAGAAATTATAGAGCAGAAAAGAACTAATCCATCAATTT  350

seq1  TATGTATTCTTTTTTATTTTGAGTCATAATTTTTGTATCTCATCACCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTCTTTTTTATTTTGAGTCATAATTTTTGTATCTCATCACCATA  400

seq1  TTTAATATACATATATAAAACTATATGTGTAACTATATATAACTATATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATATACATATATAAAACTATATGTGTAACTATATATAACTATATAT  450

seq1  ATAACTATATATATATAACTATATAACTATATAACTACATATATATATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTATATATATATAACTATATAACTATATAACTACATATATATATAT  500

seq1  ATATGCCAATGGGAATACACTCAGATTGTGTAATGGATTTTCAATTAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCAATGGGAATACACTCAGATTGTGTAATGGATTTTCAATTAGTA  550

seq1  TCATTTCTCATTCATCATGTGCTCTTATTTTTTCTAGGTACTTCATATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTCATTCATCATGTGCTCTTATTTTTTCTAGGTACTTCATATAC  600

seq1  CATCCAGTCTCTTAAATATATTATTGACTATATTTTCTATTTTTTATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTCTCTTAAATATATTATTGACTATATTTTCTATTTTTTATGTG  650

seq1  AAGTACCTGATTTTCTATTATGAAATTATTAATTATTATTGAATCTTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACCTGATTTTCTATTATGAAATTATTAATTATTATTGAATCTTCAA  700

seq1  TTCAATCAGTCCAAAGACTAAAATTAATGGGAATCAATATTACATGTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCAGTCCAAAGACTAAAATTAATGGGAATCAATATTACATGTTAT  750

seq1  TCCAAAAATTATCAGGAACTTTGACTATTTAGGATGTTTTTCACTTCATC  800
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCAAAAATTATCACGAACTTTGACTATTTAGGATGTTTTTCACTTCATC  800

seq1  TTATTCTGTTTCTCCCATTGTAGTGTAAACCACAATACTCATCTGTAACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGTTTCTCCCATTGTAGTGTAAACCACAATACTCATCTGTAACT  850

seq1  GTGAAATTTGTGCCATCTTCATGTACAGTGCTACCTGAATTATATTACGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTTGTGCCATCTTCATGTACAGTGCTACCTGAATTATATTACGT  900

seq1  TGACAATACAAGCATATATGTAAGATATACATGTAACATCAGCTCTTTCA  950
      |||| |||| ||||||||||| ||||||||||||||||||||||||||| 
seq2  TGAC-ATAC-AGCATATATGT-AGATATACATGTAACATCAGCTCTTTC-  946

seq1  AGATTATTAATATATCATACTTGGAGTCTAGTAAAATTTTGAGGAGTTAT  1000
      ||| |||  ||||||||||||||||||||||||||  ||||||||| |||
seq2  AGA-TAT--ATATATCATACTTGGAGTCTAGTAAA--TTTGAGGAG-TAT  990

seq1  AGTTCATTTTATACCAAAAAGCAATATGTATTATGTATTAATCTATCTTT  1050
      |||||||||| ||||  ||||| |||||||||||||||  ||||||| ||
seq2  AGTTCATTTT-TACC--AAAGC-ATATGTATTATGTAT--ATCTATC-TT  1033

seq1  ATTATTTCATTTCGATTAAAAATTTGAGTACTTTTATTCATGAAATATTT  1100
      ||   |||||||||||   ||||||| |||||||||||| |||||    |
seq2  AT--ATTCATTTCGAT--GAAATTTGGGTACTTTTATTCTTGAAA----T  1075

seq1  TTGAGAATATCATGTGTATATTTGTGCATATGTAGGTGTACACTCTGAAA  1150
      ||| |||||| ||| ||  ||||  ||||    ||| |||| ||||| | 
seq2  TTGGGAATAT-ATG-GTTAATTTTGGCAT---GAGG-GTAC-CTCTGGAT  1118

seq1  TTGGAGTTTCAGGCTCTGGAGAGCATTCAAGCATTACTGCT  1191
      |    | |||||   ||| |     |||||||| |||||||
seq2  T----GATTCAG---CTGAA----CTTCAAGCA-TACTGCT  1147