BAC Information

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BAC

Clone NameB6Ng01-049N16
Chromosome3 (Build37)
Map Location 82,881,793 - 83,040,061
singlet/doubletdoublet
Overlap geneEG627094
Upstream geneGucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1
Downstream geneDchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049N16.bB6Ng01-049N16.g
ACCDH873991DH873992
length8841,022
definitionDH873991|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N16, 5' end.DH873992|Mus musculus domesticus DNA, BAC clone: B6Ng01-049N16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,881,793 - 82,882,666)(83,039,005 - 83,040,061)
sequence
gaattccttcagcagtgcagccactgctcagctacctctgccccagtaga
cagcttcccttccataaccatgcctagttaaatgcactggtttatccaca
aagatagagcgaggggatctttgataagaaagagggggatcgtatgagaa
gtaatgagaaggagaaaaaaaaaacaactaaaattttattatatacatgt
gtgaaaaaaaccataaaataattaaaatataacattattgagatattcac
atagagttcagcccaccctcttccgatatacaattctgtagattttagtt
cacagagttatgctaccatcaccacagtcagttatgggacgtctgaaaaa
tatttatttactatttttattgttccacgcatgcatgagcactgcagttt
gtgtttggagggcagaggacacctttgtggagttggttctttcttctcta
tgcagactgccagaattctcattccctgggcttgggtggcaagtaccctc
acctgctgagccatctccccagcctggtgggcatttctagcaccattcaa
agaaactccatgttgaggtttggtgtgctgctatgacttttagtgctaat
ttctgggtcccaaggtctagttgcctcaagaggagtgaactctcacccac
accagcttctttatgcaaaccgtactccataatttaaaactagcgtttga
gtacaaatggctacagccagttactggagggcatagaggatggcaggttt
tcagttgccagatgggggcactgggggagggaggagaaagggaaagatca
gcagaggaggaggaagcctagctgagggggatggactatgagcacgtggc
aggagaaaacagcagggttgggaacacagcttgg
gaattcttatcagcctcttcatattaatgtcgcaaaaagattcctcccta
aagaacatgtcctccaaacaacttgagaacatggcccttgtggagtttgg
ctgaaaagtgtcttgaaagcagaaacttcccgtaagcccaaacattcatt
catacatgctactgaaggctgacacgacttttatcattcacttcatcctc
gtctttcaatccagccaacttgtttgcgaagaccacgtggttttagagga
tgcgtctgttgtctttggaggtctggggttttttgagattgttagcagct
gtgagaaatggatccatctgcatgcttcattccaagaaagcccctttcta
cgtgaaaagatctcttcctcaacatgactggtcagcctcataatgaatca
catttctagccattcacattagcaaaatatggaaagtgacattcttggta
ttaatgctctttacctgctcatttaaatgggtgacttttttttttaagaa
aaaccccagagtccctaactaagggatgggggttcggggaaacctttaaa
taacaactttaggtgaaatgtaaaactaaataattcaccttatttttttt
cctttacaacctacaaaattgcttccttgggcatatagcaggtttgtttg
tttgtttgtttgtttgtttttaaaaaacaagatctgacatcacacatgca
tccacagaacttcaaacaggaaacaaacaaacaaaaaagaatcacaaaca
aattattacatttgaagcacttaagttatctactgatcccacatctaagc
caagacagtaatcctccagcagaagtgatccaatatgagaccacagtgac
gcaaatatgtcactctctgaacacaagtttgcagtcactacagtgactgc
tgtcttgcaagtcttaagcaatgttatgcttcctcctatgttctgaggca
tcgtctgcaagctatcaattcacctaaggaaccatccttatagttgatgc
ctctttcctgacatgccgttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82881793_82882666
seq2: B6Ng01-049N16.b_45_916

seq1  GAATTCCTTCAGCAGTGCAGCCACTGCTCAGCTACCTCTGCCCCAGTAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCAGCAGTGCAGCCACTGCTCAGCTACCTCTGCCCCAGTAGA  50

seq1  CAGCTTCCCTTCCATAACCATGCCTAGTTAAATGCACTGGTTTATCCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCCCTTCCATAACCATGCCTAGTTAAATGCACTGGTTTATCCACA  100

seq1  AAGATAGAGCGAGGGGATCTTTGATAAGAAAGAGGGGGATCGTATGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGAGCGAGGGGATCTTTGATAAGAAAGAGGGGGATCGTATGAGAA  150

seq1  GTAATGAGAAGGAGAAAAAAAAAACAACTAAAATTTTATTATATACATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGAGAAGGAGAAAAAAAAAACAACTAAAATTTTATTATATACATGT  200

seq1  GTGAAAAAAACCATAAAATAATTAAAATATAACATTATTGAGATATTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAAAACCATAAAATAATTAAAATATAACATTATTGAGATATTCAC  250

seq1  ATAGAGTTCAGCCCACCCTCTTCCGATATACAATTCTGTAGATTTTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTTCAGCCCACCCTCTTCCGATATACAATTCTGTAGATTTTAGTT  300

seq1  CACAGAGTTATGCTACCATCACCACAGTCAGTTATGGGACGTCTGAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTTATGCTACCATCACCACAGTCAGTTATGGGACGTCTGAAAAA  350

seq1  TATTTATTTACTATTTTTATTGTTCCACGCATGCATGAGCACTGCAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTACTATTTTTATTGTTCCACGCATGCATGAGCACTGCAGTTT  400

seq1  GTGTTTGGAGGGCAGAGGACACCTTTGTGGAGTTGGTTCTTTCTTCTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGGAGGGCAGAGGACACCTTTGTGGAGTTGGTTCTTTCTTCTCTA  450

seq1  TGCAGACTGCCAGAATTCTCATTCCCTGGGCTTGGGTGGCAAGTACCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTGCCAGAATTCTCATTCCCTGGGCTTGGGTGGCAAGTACCCTC  500

seq1  ACCTGCTGAGCCATCTCCCCAGCCTGGTGGGCATTTCTAGCACCATTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTGAGCCATCTCCCCAGCCTGGTGGGCATTTCTAGCACCATTCAA  550

seq1  AGAAACTCCATGTTGAGGTTTGGTGTGCTGCTATGACTTTTAGTGCTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTCCATGTTGAGGTTTGGTGTGCTGCTATGACTTTTAGTGCTAAT  600

seq1  TTCTGGGTCCCAAGGTCTAGTTGCCTCAAGAGGAGTGAACTCTCACCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTCCCAAGGTCTAGTTGCCTCAAGAGGAGTGAACTCTCACCCAC  650

seq1  ACCAGCTTCTTTATGCAAACCGTACTCCATAATTTAAAACTAGCGTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTTCTTTATGCAAACCGTACTCCATAATTTAAAACTAGCGTTTGA  700

seq1  GTACAAATGGCTACAGCCAGTTACTGGAGGGCATAGAGGATGGCAGGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAATGGCTACAGCCAGTTACTGGAGGGCATAGAGGATGGCAGGTTT  750

seq1  TCAGTTGCCAGATGGGGGCACTGGGGGAGGGAGGAGAAAGGGAAAGATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGCCAGATGGGGGCACTGGGGGAGGGAGGAGAAAGGGAAAGATCA  800

seq1  GCAGAGGAGGAGGAAGCCTAGCTGAGGGGGGATGGACTATGAGCACGTGG  850
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GCAGAGGAGGAGGAAGCCTAGCTGA-GGGGGATGGACTATGAGCACGTGG  849

seq1  CCAGGAG-AAACAGCAAGGGTTTGG  874
       |||||| ||||||| |||||| ||
seq2  -CAGGAGAAAACAGC-AGGGTTGGG  872

seq1: chr3_83039005_83040061
seq2: B6Ng01-049N16.g_68_1089 (reverse)

seq1  GCAACCGAGGCATGTCAGGGAAGAGAGAGCATGCCAGACTATAAGGGATG  50
      |||||   ||||||||||| |||||   ||||  || ||||||| |||||
seq2  GCAAC---GGCATGTCAGGAAAGAG---GCAT--CA-ACTATAA-GGATG  40

seq1  CGTTTCACTGAGGTGAATTGATTAGCTGTGCAGGACGGATGCCTCAGAAC  100
       |||   || ||||||||||| ||||| |||| ||| |||||||||||||
seq2  -GTT--CCTTAGGTGAATTGA-TAGCT-TGCA-GAC-GATGCCTCAGAAC  83

seq1  ATAAGGGAGGAAAGCAATAACATTGCTTTTAAAGACTTGGCAAGACAGCA  150
      |||  ||||| |||| ||||||||||||   ||||||| |||||||||||
seq2  ATA--GGAGG-AAGC-ATAACATTGCTT---AAGACTT-GCAAGACAGCA  125

seq1  GTCACTGTTAGTGAACCTGCCAAAACTGTGTTCAGAGAGTGACATATTTG  200
      ||||||| ||||||  ||| ||||  ||||||||||||||||||||||||
seq2  GTCACTG-TAGTGA--CTG-CAAACTTGTGTTCAGAGAGTGACATATTTG  171

seq1  CGTCACTGTGGTCCTCAATATTGGATCCAACTTCTGCTGGGGGATTACTG  250
      |||||||||||| ||| ||||||||||  ||||||||||| |||||||||
seq2  CGTCACTGTGGT-CTC-ATATTGGATC--ACTTCTGCTGGAGGATTACTG  217

seq1  TCTTGGCTTAGATGTGGGATCAGTAGATAACTTAAGTGCTTCAAATGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTTAGATGTGGGATCAGTAGATAACTTAAGTGCTTCAAATGTAA  267

seq1  TAATTTGTTTTGTGATTCCTTTTTTGTTTGTTTGTTTCCTGTTTGAAGTT  350
      ||||||| ||||||||| ||||||||||||||||||||||||||||||||
seq2  TAATTTG-TTTGTGATT-CTTTTTTGTTTGTTTGTTTCCTGTTTGAAGTT  315

seq1  CTGTGGATGCATGTGTGATGTCAGATCTTGTTTTTTAAAAACAAACAAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGATGCATGTGTGATGTCAGATCTTGTTTTTTAAAAACAAACAAAC  365

seq1  AAACAAACAAACAAACCTGCTATATGCCCAAGGAAGCAATTTTGTAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAACCTGCTATATGCCCAAGGAAGCAATTTTGTAGGTT  415

seq1  GTAAAGGAAAAAAAATAAGGTGAATTATTTAGTTTTACATTTCACCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGAAAAAAAATAAGGTGAATTATTTAGTTTTACATTTCACCTAAA  465

seq1  GTTGTTATTTAAAGGTTTCCCCGAACCCCCATCCCTTAGTTAGGGACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATTTAAAGGTTTCCCCGAACCCCCATCCCTTAGTTAGGGACTCT  515

seq1  GGGGTTTTTCTTAAAAAAAAAAGTCACCCATTTAAATGAGCAGGTAAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTTTTCTTAAAAAAAAAAGTCACCCATTTAAATGAGCAGGTAAAGA  565

seq1  GCATTAATACCAAGAATGTCACTTTCCATATTTTGCTAATGTGAATGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAATACCAAGAATGTCACTTTCCATATTTTGCTAATGTGAATGGCT  615

seq1  AGAAATGTGATTCATTATGAGGCTGACCAGTCATGTTGAGGAAGAGATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTGATTCATTATGAGGCTGACCAGTCATGTTGAGGAAGAGATCT  665

seq1  TTTCACGTAGAAAGGGGCTTTCTTGGAATGAAGCATGCAGATGGATCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACGTAGAAAGGGGCTTTCTTGGAATGAAGCATGCAGATGGATCCAT  715

seq1  TTCTCACAGCTGCTAACAATCTCAAAAAACCCCAGACCTCCAAAGACAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACAGCTGCTAACAATCTCAAAAAACCCCAGACCTCCAAAGACAAC  765

seq1  AGACGCATCCTCTAAAACCACGTGGTCTTCGCAAACAAGTTGGCTGGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCATCCTCTAAAACCACGTGGTCTTCGCAAACAAGTTGGCTGGATT  815

seq1  GAAAGACGAGGATGAAGTGAATGATAAAAGTCGTGTCAGCCTTCAGTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGACGAGGATGAAGTGAATGATAAAAGTCGTGTCAGCCTTCAGTAGC  865

seq1  ATGTATGAATGAATGTTTGGGCTTACGGGAAGTTTCTGCTTTCAAGACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGAATGAATGTTTGGGCTTACGGGAAGTTTCTGCTTTCAAGACAC  915

seq1  TTTTCAGCCAAACTCCACAAGGGCCATGTTCTCAAGTTGTTTGGAGGACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGCCAAACTCCACAAGGGCCATGTTCTCAAGTTGTTTGGAGGACA  965

seq1  TGTTCTTTAGGGAGGAATCTTTTTGCGACATTAATATGAAGAGGCTGATA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTTAGGGAGGAATCTTTTTGCGACATTAATATGAAGAGGCTGATA  1015

seq1  AGAATTC  1057
      |||||||
seq2  AGAATTC  1022