BAC Information

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BAC

Clone NameB6Ng01-049O20
Chromosome3 (Build37)
Map Location 40,564,494 - 40,709,806
singlet/doubletdoublet
Overlap geneHspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik
Upstream geneLOC100041458, LOC100040882, Intu, Slc25a31
Downstream geneLarp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049O20.bB6Ng01-049O20.g
ACCDH874037DH874038
length1,163886
definitionDH874037|Mus musculus domesticus DNA, BAC clone: B6Ng01-049O20, 5' end.DH874038|Mus musculus domesticus DNA, BAC clone: B6Ng01-049O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,564,494 - 40,565,671)(40,709,021 - 40,709,806)
sequence
gaattcatatttgaacttgaagagccgttactgctgtaacttttcagatg
agtcacgaaaataaaacacttaagtaatttatgaaaagttattgtaggtt
gaatctatattttaccatactgtatattagagtaccgtgtaaaaatgact
tttctttgtcttgttctccaaagctatacaacatttaacttaatatttgt
tctcacacagttgcactggcatatggaatttataagcaggatcttccctc
attagatgagaaaccaaggaatgttgtgtttatcgacatgggacattctg
cctaccaggtctctgtttgtgcttttaacaaaggaaaactgaaagtaagt
agctcagttactttctatttataactgtgacgagtgagagcacatagtat
ataaagcccttaacaagtggactgaaagtcttagtctgcctcttaaaagc
ataaccatcaaggcaggactggagagatggctcagcaatgaagagcactt
gctactcttgcagaagatccaggttcagtttctagcacccataggtgggc
cacaaccaccagaaaccggtggcaggagatctgacctcgtcttctgattt
ctgagtatagtaagtatgcacatggtgcacagacatacatgcagacaaaa
cataaatacatcaaaataaatctaaacattctcattatatatattcatat
aatatatataatatattcatataattttcatatatatacacatacatatt
catatacatgcatacatacatacatacataatacacatcaacaacaacaa
aagaatgaccgtcagcaagtttcttaactttgctcttactgatgaaaacc
tcctagaagctggttttgttttttaatgaaccctagcactcacttctcaa
gtatgagtaaaggaggcgttccaggagcatagtgactcagtggcagctgc
agcactatgagcccacagcagtgtgatgactcatagcagctacatccctg
caactgctgctgcagagactgttgagctgccaggcctgtggggagaagtc
cctgggtctctgtagcatgatggctgcaacaggccgtcttggagactagt
ggtctgtgcgtttctgtgtcttgccactgttcgatgctagcttgtggtac
taccctctagtac
gaattcaaagagtctgttaggaaacatttttttttaaataaaaagataaa
ccttttatgttaactattagacctactatgttatgagtgatgaacagtga
ttaaaattagaaaattcaattaagaggtcttgtgtaatttagctttcatc
attaatagaaaagggtactttttcttctctcttttaggaatgggaaactt
ctctcaagaaatatgagaaacaaaattgttcagaattaaaacatttaaga
ttcagaatgaacggagtcaatcctgaaaataatttttctcaggatcaggt
tttgtcatgaggtccagcatattccagtttcacagtcactgaaaattgaa
gttacccaagaaaatcagagcctggaaaccacacacgacttcacacagga
tagtaaagagtgatgctaaaaaactagtttgtacccaagtcatgatgcta
tatgctaaagtgtacaaatataagaaagaggataaaagcaaaacttttta
tgaagctcaatatttaatttcatcaataagctactttagatttgaagcta
caatatattataactaaaataaaatgttaaatgtgtattaaaaaagaaat
ttaaaaataagcattcaaggctggagagatggtttagtaactcagagcac
ttgtggctcttgcagaatacccaggttggttctcaggacccatgtggtaa
ttcatgatcatgcacaactccagttcctggggatcctgttaccactctaa
tctccacaagcacaaggcacacagtggtacacaaacacttaaacatgcag
caggtactcatacacataaataaacagtcaagcattcatgaaacatacac
acgcacacacacacacacacacacacacacacacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40564494_40565671
seq2: B6Ng01-049O20.b_46_1208

seq1  GAATTCATATTTGAACTTGAAGAGCCGTTACTGCTGTAACTTTTCAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATTTGAACTTGAAGAGCCGTTACTGCTGTAACTTTTCAGATG  50

seq1  AGTCACGAAAATAAAACACTTAAGTAATTTATGAAAAGTTATTGTAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACGAAAATAAAACACTTAAGTAATTTATGAAAAGTTATTGTAGGTT  100

seq1  GAATCTATATTTTACCATACTGTATATTAGAGTACCGTGTAAAAATGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTATATTTTACCATACTGTATATTAGAGTACCGTGTAAAAATGACT  150

seq1  TTTCTTTGTCTTGTTCTCCAAAGCTATACAACATTTAACTTAATATTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTCTTGTTCTCCAAAGCTATACAACATTTAACTTAATATTTGT  200

seq1  TCTCACACAGTTGCACTGGCATATGGAATTTATAAGCAGGATCTTCCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACACAGTTGCACTGGCATATGGAATTTATAAGCAGGATCTTCCCTC  250

seq1  ATTAGATGAGAAACCAAGGAATGTTGTGTTTATCGACATGGGACATTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATGAGAAACCAAGGAATGTTGTGTTTATCGACATGGGACATTCTG  300

seq1  CCTACCAGGTCTCTGTTTGTGCTTTTAACAAAGGAAAACTGAAAGTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAGGTCTCTGTTTGTGCTTTTAACAAAGGAAAACTGAAAGTAAGT  350

seq1  AGCTCAGTTACTTTCTATTTATAACTGTGACGAGTGAGAGCACATAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGTTACTTTCTATTTATAACTGTGACGAGTGAGAGCACATAGTAT  400

seq1  ATAAAGCCCTTAACAAGTGGACTGAAAGTCTTAGTCTGCCTCTTAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCCCTTAACAAGTGGACTGAAAGTCTTAGTCTGCCTCTTAAAAGC  450

seq1  ATAACCATCAAGGCAGGACTGGAGAGATGGCTCAGCAATGAAGAGCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCATCAAGGCAGGACTGGAGAGATGGCTCAGCAATGAAGAGCACTT  500

seq1  GCTACTCTTGCAGAAGATCCAGGTTCAGTTTCTAGCACCCATAGGTGGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCTTGCAGAAGATCCAGGTTCAGTTTCTAGCACCCATAGGTGGGC  550

seq1  CACAACCACCAGAAACCGGTGGCAGGAGATCTGACCTCGTCTTCTGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCACCAGAAACCGGTGGCAGGAGATCTGACCTCGTCTTCTGATTT  600

seq1  CTGAGTATAGTAAGTATGCACATGGTGCACAGACATACATGCAGACAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTATAGTAAGTATGCACATGGTGCACAGACATACATGCAGACAAAA  650

seq1  CATAAATACATCAAAATAAATCTAAACATTCTCATTATATATATTCATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATACATCAAAATAAATCTAAACATTCTCATTATATATATTCATAT  700

seq1  AATATATATAATATATTCATATAATTTTCATATATATACACATACATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATAATATATTCATATAATTTTCATATATATACACATACATATT  750

seq1  CATATACATGCATACATACATACATACATAATACACATCAACAACAACAA  800
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATATACATGCATACATACATACATACATAATACACATCAACAACAAC-A  799

seq1  AAAGAATGACCGTCAGCAAGTTTCTTAACTTTGCTCTTACTGATGAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATGACCGTCAGCAAGTTTCTTAACTTTGCTCTTACTGATGAAAAC  849

seq1  CTCCTAGAAGCTGGTTTTGTTTTTTTAATGAACCCTAGCACTCACTTCTC  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTCCTAGAAGCTGGTTTTG-TTTTTTAATGAACCCTAGCACTCACTTCTC  898

seq1  AAGTATGAGTAAAGGAGGGCGTTCCAGGAGCATAGGTGACTCAGTGGCAG  950
      |||||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  AAGTATGAGTAAAGGA-GGCGTTCCAGGAGCATA-GTGACTCAGTGGCAG  946

seq1  CTGCAGCACTATGAAGCCCACAGCAGTGTGATGACTCATAGCAGCTACAT  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTGCAGCACTATG-AGCCCACAGCAGTGTGATGACTCATAGCAGCTACAT  995

seq1  CCCTGCAACCTGCTGCTGCAGAGACCTGTGAGCTGCCAGGCCTGT-GGGA  1049
      |||||||| ||||||||||||||||   ||||||||||||||||| ||||
seq2  CCCTGCAA-CTGCTGCTGCAGAGACTGTTGAGCTGCCAGGCCTGTGGGGA  1044

seq1  GAGTCCCCTGGGGTCTCTGTAGCTATGTAGTGCTTGCAATCTGTCTGTCT  1099
      ||   |||| ||||||||||||| |||   ||  ||||| | | | ||||
seq2  GAAGTCCCT-GGGTCTCTGTAGC-ATG--ATGGCTGCAA-CAGGCCGTCT  1089

seq1  GTGAGTACTATGTGTCTGTGCTGTTCTGTGTC-TGCCATCTGTCCAGATG  1148
        ||| ||||   ||||||||  ||||||||| ||||| |||| | ||||
seq2  TGGAG-ACTAGTGGTCTGTGCGTTTCTGTGTCTTGCCA-CTGTTC-GATG  1136

seq1  CATAGCCTTGTGGTACTACCTCCATAGTAC  1178
      | ||| |||||||||||||| |  ||||||
seq2  C-TAG-CTTGTGGTACTACC-CTCTAGTAC  1163

seq1: chr3_40709021_40709806
seq2: B6Ng01-049O20.g_69_853 (reverse)

seq1  TTTGTGTACCACCTGTGTGCCTTGTGCTTGTGGAGATTAGAGTGGTAACA  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTACCA-CTGTGTGCCTTGTGCTTGTGGAGATTAGAGTGGTAACA  49

seq1  GGATCCCCAGGAACTGGAGTTGTGCATGATCATGAATTACCACATGGGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCCCAGGAACTGGAGTTGTGCATGATCATGAATTACCACATGGGTC  99

seq1  CTGAGAACCAACCTGGGTATTCTGCAAGAGCCACAAGTGCTCTGAGTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACCAACCTGGGTATTCTGCAAGAGCCACAAGTGCTCTGAGTTAC  149

seq1  TAAACCATCTCTCCAGCCTTGAATGCTTATTTTTAAATTTCTTTTTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATCTCTCCAGCCTTGAATGCTTATTTTTAAATTTCTTTTTTAAT  199

seq1  ACACATTTAACATTTTATTTTAGTTATAATATATTGTAGCTTCAAATCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATTTAACATTTTATTTTAGTTATAATATATTGTAGCTTCAAATCTA  249

seq1  AAGTAGCTTATTGATGAAATTAAATATTGAGCTTCATAAAAAGTTTTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTTATTGATGAAATTAAATATTGAGCTTCATAAAAAGTTTTGCT  299

seq1  TTTATCCTCTTTCTTATATTTGTACACTTTAGCATATAGCATCATGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCTCTTTCTTATATTTGTACACTTTAGCATATAGCATCATGACTT  349

seq1  GGGTACAAACTAGTTTTTTAGCATCACTCTTTACTATCCTGTGTGAAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACAAACTAGTTTTTTAGCATCACTCTTTACTATCCTGTGTGAAGTC  399

seq1  GTGTGTGGTTTCCAGGCTCTGATTTTCTTGGGTAACTTCAATTTTCAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGTTTCCAGGCTCTGATTTTCTTGGGTAACTTCAATTTTCAGTG  449

seq1  ACTGTGAAACTGGAATATGCTGGACCTCATGACAAAACCTGATCCTGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAAACTGGAATATGCTGGACCTCATGACAAAACCTGATCCTGAGA  499

seq1  AAAATTATTTTCAGGATTGACTCCGTTCATTCTGAATCTTAAATGTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTTCAGGATTGACTCCGTTCATTCTGAATCTTAAATGTTTTA  549

seq1  ATTCTGAACAATTTTGTTTCTCATATTTCTTGAGAGAAGTTTCCCATTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGAACAATTTTGTTTCTCATATTTCTTGAGAGAAGTTTCCCATTCC  599

seq1  TAAAAGAGAGAAGAAAAAGTACCCTTTTCTATTAATGATGAAAGCTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGAGAAGAAAAAGTACCCTTTTCTATTAATGATGAAAGCTAAAT  649

seq1  TACACAAGACCTCTTAATTGAATTTTCTAATTTTAATCACTGTTCATCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAAGACCTCTTAATTGAATTTTCTAATTTTAATCACTGTTCATCAC  699

seq1  TCATAACATAGTAGGTCTAATAGTTAACATAAAAGGTTTATCTTTTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACATAGTAGGTCTAATAGTTAACATAAAAGGTTTATCTTTTTATT  749

seq1  TAAAAAAAAATGTTTCCTAACAGACTCTTTGAATTC  786
      ||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAATGTTTCCTAACAGACTCTTTGAATTC  785