BAC Information

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BAC

Clone NameB6Ng01-050A02
Chromosome2 (Build37)3 (Build37)
Map Location 142,776,511 - 142,777,698113,543,720 - 113,544,752
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC668913, LOC668914, Kif16b
Downstream geneSnrpb2, Otor, LOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050A02.bB6Ng01-050A02.g
ACCDH874086DH874087
length897991
definitionDH874086|Mus musculus domesticus DNA, BAC clone: B6Ng01-050A02, 5' end.DH874087|Mus musculus domesticus DNA, BAC clone: B6Ng01-050A02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,776,511 - 142,777,698)(113,543,720 - 113,544,752)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaaactgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattgtattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccaccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagacg
aatttgcaaattgctccttctaattcattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcagatagccatttt
tacaatgttgatcctgccaatccatgagcatgggagatctttccatcttc
tgagatcctctttatttctttcttcagagatttgagttttatcatac
gaattcaattctgttttatgattctaatatatttctagatcttattttgt
ctgacatgttacagaggttcaatggatatttgctgagtgaattaaacata
gaacatcactttgttgacttattttcaaattaaatgtagctatatatttt
aattgcgttgtcactgataaaacatatttccctaaaagttatgacttcaa
ataggaaggctaaggtcagaagcatttattgtatcattattgtattgata
ctgggttgaatggggaatatcaggccagagaagaaaattatgttactaga
aatttatcattgccctttatcaaatgttgattattcaaagtcatttttac
agagaattctaaattatttatttatatcatggattatgtagaccttttaa
gctgatataaattatgtactcataaactacaattcaaaaaattcatagaa
ctaaaatataggaatataaatatgaatgattcaataaaggcaagaagtaa
gtaagttacagaataaaatagattgtttatcaatttgtagacactgaaga
tgtcctgaaaattgttctttttatacaaatattagtttttctgcttagac
atattaagaatatgtattgcattgccttagaattatagcccatttagtta
attattgtacccatgagttaaggaacttcttaggcatttgtcaaaatgaa
tggccccagactatctatagacaacgatgcaccagaattgtttcacgttt
agtttataattctaatggaaaaattctgccaacagtcttttcttcaaagg
gaaccatagcatgttggtgaaagagtatatatttttttcttttcttttct
tttctttctttcttttcttttcttttcttttctttctttctttctttctt
tcttgagacaggttctctgtatagtctgctgtctgatcactttatagaca
gctgctcgactcagaatctgctgctctgcttcccagtgctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_142776511_142777698
seq2: B6Ng01-050A02.b_41_768 (reverse)

seq1  ACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAACAAAAAACCT  50
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGAATTAGAAGGAGCAATTTGCAAATTCGTCTGGAATAACAAAAAACCT  50

seq1  AGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACCTCTGGTGGAATCAC  100
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGGATAGCAAAAAGTCTTCTCAAGGATAAAAGAACTTCTGGTGGAATCAC  100

seq1  CATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCAT  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCAGACCTAAAGCTTTACTACAGAGCAATTGTGATAAAAACTGCAT  150

seq1  GGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATAGAATTGAAGAC  200
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GGTACTGGTATAGAGACAGACAAGTAGACCAATGGAATACAATTGAAGAC  200

seq1  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGC  250

seq1  TAAAACCATCCAGAGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  300
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGC  300

seq1  ACAACTGGTTGTTATCATGTAGAAGAATGGGAATCGATCCATACTTATCT  350
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCT  350

seq1  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACC  400

seq1  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATA  450

seq1  TGGGCACAGGGGACAAATTCCTGAACAGAACAGCAATGGCTTGTGCTGTA  500
      ||||||||||||| ||||||||||| ||||||||||||||||||||||||
seq2  TGGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTGCTGTA  500

seq1  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAA  550

seq1  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGCAAAAGACACCGTCAATAAGACAAAAAGACCACCAACAGTTTGGGAAA  600

seq1  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATCCAACATATAT  650

seq1  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACTCAAGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAAAAA  700

seq1  ATGGGGCTCACAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAAT  750
      |||||||||| ||            ||| |||||    |||         
seq2  ATGGGGCTCAGAA----------CTGAACAAAGA----ATTC--------  728

seq1  TGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATCGATCC  800
                                                        
seq2  --------------------------------------------------  728

seq1  ATACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTC  850
                                                        
seq2  --------------------------------------------------  728

seq1  ACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGAAAAGC  900
                                                        
seq2  --------------------------------------------------  728

seq1  CTTGAAGATATGGGCACAGGGGAAAAATTCCTGAACAGAAGAGCAATGGC  950
                                                        
seq2  --------------------------------------------------  728

seq1  TTGTGCTGTAAGATCGAGAATTGACAAATGGGACCTAATGAAACTCCAAA  1000
                                                        
seq2  --------------------------------------------------  728

seq1  GTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAAAAAGACCACCAACA  1050
                                                        
seq2  --------------------------------------------------  728

seq1  GACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTAATATC  1100
                                                        
seq2  --------------------------------------------------  728

seq1  CAACATATATAAAGAACTCAAGAAGGTGGACCTCAGAAAATCAAATAACC  1150
                                                        
seq2  --------------------------------------------------  728

seq1  CCATTAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1188
                                            
seq2  --------------------------------------  728

seq1: chr3_113543720_113544752
seq2: B6Ng01-050A02.g_67_1057

seq1  GAATTCAATTCTGTTTTATGATTCTAATATATTTCTAGATCTTATTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCTGTTTTATGATTCTAATATATTTCTAGATCTTATTTTGT  50

seq1  CTGACATGTTACAGAGGTTCAATGGATATTTGCTGAGTGAATTAAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATGTTACAGAGGTTCAATGGATATTTGCTGAGTGAATTAAACATA  100

seq1  GAACATCACTTTGTTGACTTATTTTCAAATTAAATGTAGCTATATATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATCACTTTGTTGACTTATTTTCAAATTAAATGTAGCTATATATTTT  150

seq1  AATTGCGTTGTCACTGATAAAACATATTTCCCTAAAAGTTATGACTTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCGTTGTCACTGATAAAACATATTTCCCTAAAAGTTATGACTTCAA  200

seq1  ATAGGAAGGCTAAGGTCAGAAGCATTTATTGTATCATTATTGTATTGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAAGGCTAAGGTCAGAAGCATTTATTGTATCATTATTGTATTGATA  250

seq1  CTGGGTTGAATGGGGAATATCAGGCCAGAGAAGAAAATTATGTTACTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTGAATGGGGAATATCAGGCCAGAGAAGAAAATTATGTTACTAGA  300

seq1  AATTTATCATTGCCCTTTATCAAATGTTGATTATTCAAAGTCATTTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATCATTGCCCTTTATCAAATGTTGATTATTCAAAGTCATTTTTAC  350

seq1  AGAGAATTCTAAATTATTTATTTATATCATGGATTATGTAGACCTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTCTAAATTATTTATTTATATCATGGATTATGTAGACCTTTTAA  400

seq1  GCTGATATAAATTATGTACTCATAAACTACAATTCAAAAAATTCATAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATATAAATTATGTACTCATAAACTACAATTCAAAAAATTCATAGAA  450

seq1  CTAAAATATAGGAATATAAATATGAATGATTCAATAAAGGCAAGAAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATATAGGAATATAAATATGAATGATTCAATAAAGGCAAGAAGTAA  500

seq1  GTAAGTTACAGAATAAAATAGATTGTTTATCAATTTGTAGACACTGAAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTTACAGAATAAAATAGATTGTTTATCAATTTGTAGACACTGAAGA  550

seq1  TGTCCTGAAAATTGTTCTTTTTATACAAATATTAGTTTTTCTGCTTAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGAAAATTGTTCTTTTTATACAAATATTAGTTTTTCTGCTTAGAC  600

seq1  ATATTAAGAATATGTATTGCATTGCCTTAGAATTATAGCCCATTTAGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAAGAATATGTATTGCATTGCCTTAGAATTATAGCCCATTTAGTTA  650

seq1  ATTATTGTACCCATGAGTTAAGGAACTTCTTAGGCATTTGTCAAAATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGTACCCATGAGTTAAGGAACTTCTTAGGCATTTGTCAAAATGAA  700

seq1  TGGCCCCAGACTATCTATAGACAACGATGCACCAGAATTGTTTCACGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCAGACTATCTATAGACAACGATGCACCAGAATTGTTTCACGTTT  750

seq1  AGTTTATAATTCTAATGGAAAAATTCTGCCAACAGTCTTTTCTTCAAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATAATTCTAATGGAAAAATTCTGCCAACAGTCTTTTCTTCAAAGG  800

seq1  GAACCATAGCATGTTGGTGAAAGAGTATATATTTTTTTTCTTTTTCTTTT  850
      ||||||||||||||||||||||||||||||||||||||         |||
seq2  GAACCATAGCATGTTGGTGAAAGAGTATATATTTTTTT--------CTTT  842

seq1  TCTTTTTTCCTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTT  900
      ||||||   ||||||||          | ||||||||   ||||||||| 
seq2  TCTTTT---CTTTTCTT----------TCTTTCTTTT--CTTTTCTTTT-  876

seq1  CCTTTTCTTTTTCTTTTTCTTTTTCTTTTGAGACAGGGTTTCTCTGTATA  950
       ||||||||| | | ||||||| | | ||||||||||  |||||||||||
seq2  -CTTTTCTTTCTTTCTTTCTTTCTTTCTTGAGACAGG--TTCTCTGTATA  923

seq1  GTCCTGGCTGTCCTGGAATTCACTTTATAGACCAGGCTGGCCTCGAACTC  1000
      |||   ||||| |||    |||||||||||||   ||||  |||| ||||
seq2  GTC--TGCTGT-CTG---ATCACTTTATAGAC--AGCTG--CTCG-ACTC  962

seq1  AGAAATCTGCCTGCCTCTGCTTCCCAAGTGCTG  1033
      || |||||| ||| ||||||||||| |||||||
seq2  AG-AATCTG-CTG-CTCTGCTTCCC-AGTGCTG  991