BAC Information

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BAC

Clone NameB6Ng01-050B20
Chromosome3 (Build37)2 (Build37)
Map Location 41,059,235 - 41,059,737118,804,356 - 118,804,932
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050B20.bB6Ng01-050B20.g
ACCDH874164DH874165
length844926
definitionDH874164|Mus musculus domesticus DNA, BAC clone: B6Ng01-050B20, 5' end.DH874165|Mus musculus domesticus DNA, BAC clone: B6Ng01-050B20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,235 - 41,059,737)(118,804,356 - 118,804,932)
sequence
gaattctttgtttagctctgagccccattttttaatggggttatctgatt
ttctggagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacggtgtcttttgccttacagaaactttgcaatttta
tgaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtgcccatatcttcgaggcttttccccac
tttctcctctataagtttcactgtctctggttttatgtggagttccttga
tccacttagatttgaccttagtacaaggagataggaatggatcaatttgc
attcttctacatgataaccaccagttatgccaggaccatttgttgaaaat
gctgtctttttccagtggatggttttagctcccttgtcaaagatcaagtg
accagaagatgttccaaccagtaagaaggacacatgctcaactaagttca
tagcagccttatttgtaatagccagaagctggaaagaacccagatgcccc
tcaacagaggaatggatacagaaaatgtggtacatttacacaatagagta
ctactcagctattaaaaagaatgaatttatgaaattcctaggcaaaggga
tggacctgaagggcatcatcctgagtgaggtaacccaatcacaaaagaac
tcacatgaaatgtactcactgataagtggattttagtccagaaacttaga
atacccaagatacagaatacaatttgcaaacacatgaaaactca
gaattcactctgtagaccagactggcctcaaactcagagatcttgtcagc
ctcctgagagcacatgtatctccatgggcatgtgcatgcacgtgtatgtg
gagaccagaggttgacataaggtatcttccattattgctctccactttat
attttgaggcagatttccttacttgaaccctcaaacaaggcttgctggct
tggctcttctagctacacagctgtctctggagatcctgtctctgcctccc
atcatgcacagtggattttatatgcttgtcaaggatcccaagtctggttt
ctcaagtgtgagtgctaagtacctagtgaaccatctcctgagcccaaaaa
tgaattttctttttaagacagggtcactctttatagccctggctgtcctg
gaactcgctttgtagaccaggctggcctcgaactcataacgattcacgta
tttctgagtccccagagctaaaattaaaggcatgtgccaccatgcctagc
aatccaatttttaaagagaacattttatttgattttagagatgtgttgct
gaatgtgctaatgtacacatctagtccaggcattcaggaggcagaggcag
aagagtcaggagttcaaggctactttaggcccacacaagattctaaagaa
gcaaaaacttgtgattaatctggaaatgctgtcattcttgtatttttaga
ataaaaaatgtgtttataagtaaaaggatgataataattagtgatagtat
tttcaatgaacttacaaaatatagctgtcctcactggcctgatgatttcc
tggtgcaagaaactctaaactcagaagtgttattttccaatgtgaaaaga
tgaacacgtgagcaaggcatgtgtgtctcagagtgggccagaacagttcg
tgagtctcggggcagcaagactataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059235_41059737
seq2: B6Ng01-050B20.b_41_543 (reverse)

seq1  TGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAG  50
      ||||||||||||||| ||||||||||||||||||||||| ||| ||||||
seq2  TGGTCACTTGATCTTTGACAAGGGAGCTAAAACCATCCACTGG-AAAAAG  49

seq1  ACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGA  100
      ||||||||||||||||||||| |||||| ||||||| |||||||||||||
seq2  ACAGCATTTTCAACAAATGGTCCTGGCATAACTGGTGGTTATCATGTAGA  99

seq1  AGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAA  150
      ||||||| |||||||||| |||||||||||||||||||||||||||||||
seq2  AGAATGCAAATTGATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAA  149

seq1  GTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATAGAGG  200
      |||||||||||||| ||||||||||||||||||| |||||||||||||||
seq2  GTGGATCAAGGAACTCCACATAAAACCAGAGACAGTGAAACTTATAGAGG  199

seq1  AGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTG  250
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  AGAAAGTGGGGAAAAGCCTCGAAGATATGGGCACAGGGGAAAAATTCCTG  249

seq1  CATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGA  300
       |||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  AATAGAACAGCAATGGCTTGTGCTGTAAGATCGAGAATCGACAAATGGGA  299

seq1  CCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGA  350
      |||||| ||| ||||||| ||||| |||||||||||||||||||||||||
seq2  CCTCATAAAATTGCAAAGTTTCTGTAAGGCAAAAGACACCGTCAATAAGA  349

seq1  CAAAAAGG-CACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCA  399
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGCCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCA  399

seq1  GATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTC  449
      |||||||||||||||||||| |||||| ||||||||||||||||||| ||
seq2  GATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACTC  449

seq1  CAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAG  499
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATCAGATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAG  499

seq1  AATT  503
      ||||
seq2  AATT  503

seq1: chr2_118804356_118804932
seq2: B6Ng01-050B20.g_65_641 (reverse)

seq1  GGACTAGATGTGTACATTAGCACATTCAGCAACACATCTCTAAAATCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGATGTGTACATTAGCACATTCAGCAACACATCTCTAAAATCAAA  50

seq1  TAAAATGTTCTCTTTAAAAATTGGATTGCTAGGCATGGTGGCACATGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGTTCTCTTTAAAAATTGGATTGCTAGGCATGGTGGCACATGCCT  100

seq1  TTAATTTTAGCTCTGGGGACTCAGAAATACGTGAATCGTTATGAGTTCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTAGCTCTGGGGACTCAGAAATACGTGAATCGTTATGAGTTCGA  150

seq1  GGCCAGCCTGGTCTACAAAGCGAGTTCCAGGACAGCCAGGGCTATAAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGCCTGGTCTACAAAGCGAGTTCCAGGACAGCCAGGGCTATAAAGA  200

seq1  GTGACCCTGTCTTAAAAAGAAAATTCATTTTTGGGCTCAGGAGATGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCTGTCTTAAAAAGAAAATTCATTTTTGGGCTCAGGAGATGGTTC  250

seq1  ACTAGGTACTTAGCACTCACACTTGAGAAACCAGACTTGGGATCCTTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGTACTTAGCACTCACACTTGAGAAACCAGACTTGGGATCCTTGAC  300

seq1  AAGCATATAAAATCCACTGTGCATGATGGGAGGCAGAGACAGGATCTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATATAAAATCCACTGTGCATGATGGGAGGCAGAGACAGGATCTCCA  350

seq1  GAGACAGCTGTGTAGCTAGAAGAGCCAAGCCAGCAAGCCTTGTTTGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGCTGTGTAGCTAGAAGAGCCAAGCCAGCAAGCCTTGTTTGAGGG  400

seq1  TTCAAGTAAGGAAATCTGCCTCAAAATATAAAGTGGAGAGCAATAATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGTAAGGAAATCTGCCTCAAAATATAAAGTGGAGAGCAATAATGGA  450

seq1  AGATACCTTATGTCAACCTCTGGTCTCCACATACACGTGCATGCACATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACCTTATGTCAACCTCTGGTCTCCACATACACGTGCATGCACATGC  500

seq1  CCATGGAGATACATGTGCTCTCAGGAGGCTGACAAGATCTCTGAGTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGATACATGTGCTCTCAGGAGGCTGACAAGATCTCTGAGTTTGA  550

seq1  GGCCAGTCTGGTCTACAGAGTGAATTC  577
      |||||||||||||||||||||||||||
seq2  GGCCAGTCTGGTCTACAGAGTGAATTC  577