BAC Information

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BAC

Clone NameB6Ng01-050C18
Chromosome3 (Build37)
Map Location 82,463,442 - 82,599,312
singlet/doubletdoublet
Overlap geneLOC100041940
Upstream geneLOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9, Npy2r
Downstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050C18.bB6Ng01-050C18.g
ACCDH874204DH874205
length1,110793
definitionDH874204|Mus musculus domesticus DNA, BAC clone: B6Ng01-050C18, 5' end.DH874205|Mus musculus domesticus DNA, BAC clone: B6Ng01-050C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,598,201 - 82,599,312)(82,463,442 - 82,464,227)
sequence
gaattctgtgtttaagaaacctaccagttgccttcccaaggagaagaaga
aacattgagattctcccctttaatagcaacatgctattaggtcatagaga
aatgagggaaagtaggatttttttctccattttaatatgcatttctaata
ggaaaaagacaatttagttaaggcttttcagctgttttcacaaatgaatc
tccatttttatgtaaaatttattaatataatagggtttattttccaaatg
tttttagagtctgaattttgatttgtctcatctgcaggttttccaggaga
aataaaaaggaggacctcactgtttacagattaaaggtgtttatcttttg
ttattggttataagaacagtgtaggttcagagtggaaaggacatgtgttg
acttatgagagaattggaaagagagataaagtttaaattgtgttcccaat
aaagctgctctttttgtcacattcaatctttatgcatttgaacccactat
ggatttgtttcccattggcatggaataaattgattttggacacttgtctc
tgtttattctccccggacattatattattcctgaagagcactcatagtat
gatgcataaaatgagatttttgtattgaaataaaggaagattagactttt
atgtcacccagtaatcacaccccattttcctttattaagaaaaaatacat
ccacaaatgtctgatttattctccccactgttctaagcaacatgtcctac
aggttgtgaccttttctctgtggaatgggatggtaagacacaggctgtgc
ttccagcacagcacagattgtgaaactgtccttcctccccagctcttcaa
tgcctggctccctatttctttctttgctcggatacctagtctctcctaga
ctgcttcactcgtgtatttccatgcatgaatggctattcatgtggatgct
tgtgtgtaaatgggcactgagtatatttcagcctggcttccttcctgagt
cacccgggaacaccattgctttttataaaataatacgttgattctgcagg
tgctaatgtgagggagccatgggcggtgctaaacaagctccttcttactt
taagctctct
gaattcaacacccaatctttaggataggaaagttggctcagtaggtggag
cccttatcatgcaagtgtgaggacctgagttcaaatgcccagaacacgtg
taaaggtggtttcagaacagtgggtctgtaatcccagtgtccctacggtg
aggtggggagcaaagactgaagaatcctcagactcttggaagtcaatcag
ccttgattatatggcaatggacagcaaagagactaatcctgtctcaaaaa
aaggtaaagtgagaaacagcaccctctgagctccacgtggctctaagcat
gtgagtgcatatgctgtctctgtctctgtctctgtcttcctctctctctc
tctctctctctctctctctctctctctctcactcacacactcctctgata
cacacacacagagacaactctctcaccacacacacacacacacacatctt
acacacatactctcacaccgtacacacatacactcacagagacaactctc
tcaccacacacacacgcacacacacacacacacatacgcagatacacctc
tccctttctctctccctctctctctgtctctccctccacctctatttccc
cctgcgctttccctccccaacccccactctctctctctctctctgtattc
tgcttgtgggacaaaaaacaagctctcagctattgctcccgtgccatgcc
tgcctgcctgaggcttcgctccttgtcacagtgatcatggattctcccgc
gaaactgaaaacactcttaaaggcttgcttctataggtggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82598201_82599312
seq2: B6Ng01-050C18.b_28_1137 (reverse)

seq1  AGAGAGGCTTTAAAGTAAGAAGGAGCCTGGTCTAGCACAGCCCATGGCTC  50
      ||||||   |||||||||||||||| || || |||||| |||||||||||
seq2  AGAGAG--CTTAAAGTAAGAAGGAG-CTTGTTTAGCACCGCCCATGGCTC  47

seq1  CCTCACATTAGCACCTGCAG-ATCAACGTTATAATTTTAT-AAAAGCAAT  98
      |||||||||||||||||||| ||||||| ||| ||||||| |||||||||
seq2  CCTCACATTAGCACCTGCAGAATCAACG-TATTATTTTATAAAAAGCAAT  96

seq1  TGTGTTTCCCGGGTGACATCAGGAAGGAAG-CAGGCTGAAA-ATACTCAG  146
       ||| |||||||||||| |||||||||||| |||||||||| ||||||||
seq2  GGTG-TTCCCGGGTGAC-TCAGGAAGGAAGCCAGGCTGAAATATACTCAG  144

seq1  TGCCCATTTACACACAAGCATCCACATGAATAGCCATTCATGCATGGAAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATTTACACACAAGCATCCACATGAATAGCCATTCATGCATGGAAA  194

seq1  TACACGAGTGAAGCAGTCTAGGAGAGACTAGGTATCCGAGCAAAGAAAGA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGAGTGAAGCAGTCTAGGAGAGACTAGGTATCCGAGCAAAGAAAGA  244

seq1  AATAGGGAGCCAGGCATTGAAGAGCTGGGGAGGAAGGACAGTTTCACAAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGGAGCCAGGCATTGAAGAGCTGGGGAGGAAGGACAGTTTCACAAT  294

seq1  CTGTGCTGTGCTGGAAGCACAGCCTGTGTCTTACCATCCCATTCCACAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTGTGCTGGAAGCACAGCCTGTGTCTTACCATCCCATTCCACAGA  344

seq1  GAAAAGGTCACAACCTGTAGGACATGTTGCTTAGAACAGTGGGGAGAATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGTCACAACCTGTAGGACATGTTGCTTAGAACAGTGGGGAGAATA  394

seq1  AATCAGACATTTGTGGATGTATTTTTTCTTAATAAAGGAAAATGGGGTGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGACATTTGTGGATGTATTTTTTCTTAATAAAGGAAAATGGGGTGT  444

seq1  GATTACTGGGTGACATAAAAGTCTAATCTTCCTTTATTTCAATACAAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACTGGGTGACATAAAAGTCTAATCTTCCTTTATTTCAATACAAAAA  494

seq1  TCTCATTTTATGCATCATACTATGAGTGCTCTTCAGGAATAATATAATGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTTATGCATCATACTATGAGTGCTCTTCAGGAATAATATAATGT  544

seq1  CCGGGGAGAATAAACAGAGACAAGTGTCCAAAATCAATTTATTCCATGCC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGAGAATAAACAGAGACAAGTGTCCAAAATCAATTTATTCCATGCC  594

seq1  AATGGGAAACAAATCCATAGTGGGTTCAAATGCATAAAGATTGAATGTGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAAACAAATCCATAGTGGGTTCAAATGCATAAAGATTGAATGTGA  644

seq1  CAAAAAGAGCAGCTTTATTGGGAACACAATTTAAACTTTATCTCTCTTTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGAGCAGCTTTATTGGGAACACAATTTAAACTTTATCTCTCTTTC  694

seq1  CAATTCTCTCATAAGTCAACACATGTCCTTTCCACTCTGAACCTACACTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTCTCATAAGTCAACACATGTCCTTTCCACTCTGAACCTACACTG  744

seq1  TTCTTATAACCAATAACAAAAGATAAACACCTTTAATCTGTAAACAGTGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAACCAATAACAAAAGATAAACACCTTTAATCTGTAAACAGTGA  794

seq1  GGTCCTCCTTTTTATTTCTCCTGGAAAACCTGCAGATGAGACAAATCAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCCTTTTTATTTCTCCTGGAAAACCTGCAGATGAGACAAATCAAA  844

seq1  ATTCAGACTCTAAAAACATTTGGAAAATAAACCCTATTATATTAATAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGACTCTAAAAACATTTGGAAAATAAACCCTATTATATTAATAAAT  894

seq1  TTTACATAAAAATGGAGATTCATTTGTGAAAACAGCTGAAAAGCCTTAAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACATAAAAATGGAGATTCATTTGTGAAAACAGCTGAAAAGCCTTAAC  944

seq1  TAAATTGTCTTTTTCCTATTAGAAATGCATATTAAAATGGAGAAAAAAAT  996
      ||||||||||||||||||||||||||||||||                  
seq2  TAAATTGTCTTTTTCCTATTAGAAATGCATATNNNNNNNNNNNNNNNNNN  994

seq1  CCTACTTTCCCTCATTTCTCTATGACCTAATAGCATGTTGCTATTAAAGG  1046
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  NCTACTTTCCCTCATTTCTCTATGACCTAATAGCATGTTGCTATTAAAGG  1044

seq1  GGAGAATCTCAATGTTTCTTCTTCTCCTTGGGAAGGCAACTGGTAGGTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATCTCAATGTTTCTTCTTCTCCTTGGGAAGGCAACTGGTAGGTTT  1094

seq1  CTTAAACACAGAATTC  1112
      ||||||||||||||||
seq2  CTTAAACACAGAATTC  1110

seq1: chr3_82463442_82464227
seq2: B6Ng01-050C18.g_67_851

seq1  GAATTCAACACCCAATCTTTAGGATAGGAAAGTTGGCTCAGTAGGTGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACACCCAATCTTTAGGATAGGAAAGTTGGCTCAGTAGGTGGAG  50

seq1  CCCTTATCATGCAAGTGTGAGGACCTGAGTTCAAATGCCCAGAACACGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATCATGCAAGTGTGAGGACCTGAGTTCAAATGCCCAGAACACGTG  100

seq1  TAAAGGTGGTTTCAGAACAGTGGGTCTGTAATCCCAGTGTCCCTACGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGGTTTCAGAACAGTGGGTCTGTAATCCCAGTGTCCCTACGGTG  150

seq1  AGGTGGGGAGCAAAGACTGAAGAATCCTCAGACTCTTGGAAGTCAATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGAGCAAAGACTGAAGAATCCTCAGACTCTTGGAAGTCAATCAG  200

seq1  CCTTGATTATATGGCAATGGACAGCAAAGAGACTAATCCTGTCTCAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGATTATATGGCAATGGACAGCAAAGAGACTAATCCTGTCTCAAAAA  250

seq1  AAGGTAAAGTGAGAAACAGCACCCTCTGAGCTCCACGTGGCTCTAAGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAAGTGAGAAACAGCACCCTCTGAGCTCCACGTGGCTCTAAGCAT  300

seq1  GTGAGTGCATATGCTGTCTCTGTCTCTGTCTCTGTCTTCCTCTCTCTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGCATATGCTGTCTCTGTCTCTGTCTCTGTCTTCCTCTCTCTCTC  350

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACCTCTCATA  400
      |||||||||||||||||||||||||||||||| ||||||| ||||| |||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACACACTCCTCTGATA  400

seq1  CACACTCACAGAGACAACTCTCTCACCACACACACACACACACACACCTT  450
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  CACACACACAGAGACAACTCTCTCACCACACACACACACACACACATCTT  450

seq1  ACACACATACACTCACACCGTACACACATACACTCACAGAGACAACTCTC  500
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ACACACATACTCTCACACCGTACACACATACACTCACAGAGACAACTCTC  500

seq1  TCACCACACACACACGCACACACACACACACACATACACAGATACACCTC  550
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TCACCACACACACACGCACACACACACACACACATACGCAGATACACCTC  550

seq1  TCCCTTTCTCTCTCCCTCTCTCTCTGTCTCTCCCTCCACCTCTATTTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTCTCTCCCTCTCTCTCTGTCTCTCCCTCCACCTCTATTTCCC  600

seq1  CCTGCACTTTCCCTCCCCAACCCCAACTCTCTCTCTCTCTCTCTGTATTC  650
      ||||| |||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTGCGCTTTCCCTCCCCAACCCCCACTCTCTCTCTCTCTCTCTGTATTC  650

seq1  TGCTTGTGGGTC-AAATACAAGCTCTCAGCTATTGCTCCAGTGCCATGCC  699
      |||||||||| | ||| |||||||||||||||||||||| ||||||||||
seq2  TGCTTGTGGGACAAAAAACAAGCTCTCAGCTATTGCTCCCGTGCCATGCC  700

seq1  TGCCTGCCTGATGCTACGCTTCTTGTCACAATGATCATGGATTCTCCCTC  749
      ||||||||||| ||| |||| ||||||||| ||||||||||||||||| |
seq2  TGCCTGCCTGAGGCTTCGCTCCTTGTCACAGTGATCATGGATTCTCCCGC  750

seq1  TGAAACTGTAAACCCTCATTAAAGGCTTTCTTCTATA  786
       ||||||| |||| ||| |||||||||| ||||||||
seq2  -GAAACTGAAAACACTC-TTAAAGGCTTGCTTCTATA  785